Wall clock time and date at job start Mon Mar 30 2020 07:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47383 * 2 1 4 4 H 1.08996 * 109.47273 * 175.03974 * 3 2 1 5 5 C 1.50705 * 109.46807 * 55.03924 * 3 2 1 6 6 H 1.07996 * 120.00066 * 239.99828 * 5 3 2 7 7 C 1.37877 * 119.99845 * 60.00550 * 5 3 2 8 8 N 1.31517 * 119.99762 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 120.00049 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.47357 * 270.00459 * 9 7 5 11 11 H 1.48495 * 109.46852 * 30.00716 * 9 7 5 12 12 H 1.48505 * 109.46614 * 150.00228 * 9 7 5 13 13 N 1.46900 * 109.47225 * 295.04171 * 3 2 1 14 14 C 1.46901 * 110.99631 * 278.24555 * 13 3 2 15 15 C 1.53005 * 109.46740 * 175.91390 * 14 13 3 16 16 C 1.53000 * 110.01645 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.47098 * 315.98142 * 16 15 14 18 18 C 1.53001 * 109.47087 * 173.33724 * 17 16 15 19 19 C 1.52990 * 109.47280 * 293.33920 * 17 16 15 20 20 C 1.54272 * 110.03032 * 58.60658 * 15 14 13 21 21 C 1.54959 * 104.16174 * 217.13266 * 20 15 14 22 22 C 1.54895 * 102.77480 * 37.88907 * 21 20 15 23 23 C 1.53868 * 110.03594 * 301.39025 * 15 14 13 24 24 H 1.08999 * 109.47047 * 65.08154 * 1 2 3 25 25 H 1.09003 * 109.47134 * 185.07845 * 1 2 3 26 26 H 1.09000 * 109.46770 * 305.08506 * 1 2 3 27 27 H 1.08998 * 109.47271 * 240.00131 * 2 1 3 28 28 H 1.09001 * 109.47225 * 120.00311 * 2 1 3 29 29 H 0.97006 * 119.99816 * 179.97438 * 8 7 5 30 30 H 1.00900 * 110.99567 * 42.19416 * 13 3 2 31 31 H 1.08999 * 109.47088 * 295.91035 * 14 13 3 32 32 H 1.08992 * 109.47217 * 55.91837 * 14 13 3 33 33 H 1.09005 * 109.46337 * 75.97836 * 16 15 14 34 34 H 1.08994 * 109.47074 * 195.97828 * 16 15 14 35 35 H 1.08998 * 109.47170 * 53.34193 * 17 16 15 36 36 H 1.09011 * 109.46974 * 60.00028 * 18 17 16 37 37 H 1.08995 * 109.47276 * 180.02562 * 18 17 16 38 38 H 1.09003 * 109.47295 * 300.00703 * 18 17 16 39 39 H 1.09006 * 109.47243 * 312.35463 * 19 17 16 40 40 H 1.09004 * 109.47339 * 72.35596 * 19 17 16 41 41 H 1.09001 * 109.47054 * 192.35426 * 19 17 16 42 42 H 1.09001 * 110.48892 * 335.78360 * 20 15 14 43 43 H 1.09001 * 110.48118 * 98.42757 * 20 15 14 44 44 H 1.08994 * 110.72233 * 279.58029 * 21 20 15 45 45 H 1.08996 * 110.76706 * 156.22053 * 21 20 15 46 46 H 1.09004 * 110.48868 * 203.40409 * 22 21 20 47 47 H 1.09004 * 110.48454 * 80.75895 * 22 21 20 48 48 H 1.08998 * 110.03341 * 238.57000 * 23 15 14 49 49 H 1.09006 * 110.02922 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1264 1.4438 0.0889 5 6 1.4399 2.1875 1.1645 6 1 0.8302 3.0616 0.9899 7 6 1.6693 1.7531 2.4528 8 7 1.1460 2.4035 3.4690 9 14 2.7234 0.2408 2.7547 10 1 1.8623 -0.9689 2.7650 11 1 3.7352 0.1190 1.6747 12 1 3.4109 0.3702 4.0647 13 7 1.6506 2.0996 -1.2548 14 6 2.5825 1.7595 -2.3383 15 6 2.0889 2.3776 -3.6481 16 6 3.0514 2.0314 -4.7859 17 6 4.4932 2.2150 -4.3079 18 6 5.4558 1.7123 -5.3857 19 6 4.7568 3.6980 -4.0402 20 6 1.9754 3.9090 -3.5000 21 6 0.7106 4.2762 -4.3165 22 6 -0.2462 3.0960 -4.0150 23 6 0.6771 1.8608 -3.9758 24 1 -0.3633 0.4330 -0.9320 25 1 -0.3633 -1.0237 0.0910 26 1 -0.3633 0.5907 0.8410 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.3071 2.0977 4.3754 30 1 0.7021 1.8649 -1.5066 31 1 3.5722 2.1504 -2.1024 32 1 2.6356 0.6762 -2.4452 33 1 2.8981 0.9956 -5.0888 34 1 2.8632 2.6897 -5.6340 35 1 4.6468 1.6472 -3.3902 36 1 5.3021 2.2800 -6.3035 37 1 6.4829 1.8426 -5.0450 38 1 5.2679 0.6556 -5.5765 39 1 4.3967 4.2889 -4.8825 40 1 4.2343 4.0021 -3.1332 41 1 5.8274 3.8598 -3.9143 42 1 1.8460 4.1825 -2.4528 43 1 2.8553 4.3988 -3.9173 44 1 0.9396 4.3254 -5.3810 45 1 0.2852 5.2171 -3.9678 46 1 -0.9872 2.9934 -4.8078 47 1 -0.7348 3.2378 -3.0509 48 1 0.6773 1.3638 -4.9458 49 1 0.3433 1.1700 -3.2014 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094878818.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:14 Heat of formation + Delta-G solvation = -37.429560 kcal Electronic energy + Delta-G solvation = -22576.514381 eV Core-core repulsion = 19729.853823 eV Total energy + Delta-G solvation = -2846.660558 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.88348 -38.07581 -36.29488 -34.38460 -32.95196 -30.77190 -29.81687 -28.76665 -27.73159 -26.08747 -24.99879 -24.97056 -21.49504 -21.31043 -20.81827 -19.40872 -18.39814 -17.15545 -16.87552 -16.49089 -15.89075 -15.43524 -15.25111 -14.89464 -14.69142 -14.56373 -14.41471 -14.17094 -13.84922 -13.70706 -13.13480 -12.99982 -12.90670 -12.78830 -12.65090 -12.48195 -12.36846 -12.26955 -11.87361 -11.83928 -11.71374 -11.55805 -11.36384 -11.30701 -11.19096 -11.15786 -11.06242 -10.87346 -10.69795 -10.64570 -8.87311 -8.23507 -6.22113 1.27979 1.33142 1.41969 2.33239 3.11576 3.53944 3.70195 3.87011 3.97714 4.13613 4.19997 4.24748 4.26857 4.30533 4.44601 4.52801 4.57791 4.70341 4.72791 4.75220 4.80589 4.86176 4.89232 4.94779 4.96364 5.02614 5.06412 5.08783 5.11606 5.13235 5.15418 5.18091 5.27509 5.29291 5.31746 5.36211 5.41981 5.56269 5.56544 5.60341 5.62406 5.65436 5.74234 5.80707 6.12710 6.77620 6.81945 6.89115 7.41392 8.93898 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.019382 B = 0.006006 C = 0.005385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.273224 B = 4661.235887 C = 5198.323394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.157 4.157 3 C 0.191 3.809 4 H 0.019 0.981 5 C -0.481 4.481 6 H 0.036 0.964 7 C 0.015 3.985 8 N -0.951 5.951 9 Si 0.940 3.060 10 H -0.268 1.268 11 H -0.255 1.255 12 H -0.301 1.301 13 N -0.675 5.675 14 C 0.068 3.932 15 C -0.051 4.051 16 C -0.090 4.090 17 C -0.104 4.104 18 C -0.142 4.142 19 C -0.152 4.152 20 C -0.129 4.129 21 C -0.118 4.118 22 C -0.121 4.121 23 C -0.115 4.115 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.044 0.956 27 H 0.059 0.941 28 H 0.035 0.965 29 H 0.263 0.737 30 H 0.335 0.665 31 H 0.061 0.939 32 H 0.016 0.984 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.066 0.934 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.054 0.946 43 H 0.088 0.912 44 H 0.076 0.924 45 H 0.057 0.943 46 H 0.073 0.927 47 H 0.047 0.953 48 H 0.076 0.924 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.943 -2.418 -20.698 21.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.196 4.196 3 C 0.081 3.919 4 H 0.037 0.963 5 C -0.520 4.520 6 H 0.055 0.945 7 C -0.181 4.181 8 N -0.592 5.592 9 Si 0.768 3.232 10 H -0.195 1.195 11 H -0.180 1.180 12 H -0.229 1.229 13 N -0.307 5.307 14 C -0.061 4.061 15 C -0.051 4.051 16 C -0.128 4.128 17 C -0.122 4.122 18 C -0.199 4.199 19 C -0.209 4.209 20 C -0.166 4.166 21 C -0.155 4.155 22 C -0.159 4.159 23 C -0.153 4.153 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.155 0.845 31 H 0.079 0.921 32 H 0.034 0.966 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.106 0.894 44 H 0.095 0.905 45 H 0.076 0.924 46 H 0.092 0.908 47 H 0.066 0.934 48 H 0.095 0.905 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.244 -1.819 -20.374 20.891 hybrid contribution 0.032 -1.457 1.024 1.782 sum 4.276 -3.277 -19.350 20.086 Atomic orbital electron populations 1.21560 0.95053 1.00553 1.01715 1.22416 0.97921 0.99806 0.99451 1.19422 0.94594 0.89007 0.88921 0.96304 1.21086 1.29677 1.11290 0.89951 0.94546 1.25627 0.96974 0.99604 0.95942 1.70038 1.47467 1.42479 0.99230 0.85994 0.79900 0.80619 0.76683 1.19465 1.17987 1.22878 1.60541 1.05829 1.62106 1.02232 1.22158 0.96373 0.96388 0.91194 1.21145 0.94896 0.95783 0.93288 1.21676 0.92914 1.01450 0.96772 1.21222 0.95338 0.96814 0.98857 1.21811 0.98601 1.00952 0.98540 1.22127 1.00986 0.95962 1.01776 1.22888 0.98802 0.94510 1.00419 1.22459 0.95578 0.97492 1.00021 1.22305 0.97688 0.95013 1.00879 1.22271 0.94239 0.97655 1.01139 0.92496 0.92684 0.93672 0.92216 0.94625 0.92844 0.84474 0.92059 0.96566 0.91877 0.90588 0.92402 0.91950 0.92855 0.92691 0.91528 0.92851 0.93046 0.92761 0.89362 0.90530 0.92444 0.90833 0.93402 0.90494 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.15 9.38 71.98 0.68 -4.47 16 2 C -0.16 -6.51 5.21 30.60 0.16 -6.35 16 3 C 0.19 8.86 1.92 44.17 0.08 8.94 16 4 H 0.02 0.93 6.96 -2.39 -0.02 0.92 16 5 C -0.48 -27.37 7.84 25.60 0.20 -27.17 16 6 H 0.04 2.34 8.06 -2.91 -0.02 2.32 16 7 C 0.01 0.87 5.43 84.65 0.46 1.33 16 8 N -0.95 -59.94 13.96 21.45 0.30 -59.64 16 9 Si 0.94 45.73 24.32 68.60 1.67 47.40 16 10 H -0.27 -12.47 6.91 99.48 0.69 -11.78 16 11 H -0.26 -11.70 6.53 99.48 0.65 -11.05 16 12 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 13 N -0.67 -26.73 5.24 -495.44 -2.60 -29.33 16 14 C 0.07 2.18 3.50 86.30 0.30 2.48 16 15 C -0.05 -1.27 0.48 -51.46 -0.02 -1.29 16 16 C -0.09 -1.81 3.86 30.59 0.12 -1.69 16 17 C -0.10 -2.14 2.41 -10.80 -0.03 -2.17 16 18 C -0.14 -2.37 9.16 71.98 0.66 -1.72 16 19 C -0.15 -3.16 7.43 71.98 0.53 -2.62 16 20 C -0.13 -3.38 4.58 31.70 0.15 -3.24 16 21 C -0.12 -2.66 6.91 31.91 0.22 -2.44 16 22 C -0.12 -2.85 6.83 31.67 0.22 -2.64 16 23 C -0.12 -2.75 5.51 31.32 0.17 -2.57 16 24 H 0.06 1.99 6.66 -2.39 -0.02 1.97 16 25 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.04 2.09 6.87 -2.39 -0.02 2.07 16 27 H 0.06 2.16 7.09 -2.39 -0.02 2.14 16 28 H 0.04 1.56 3.41 -2.39 -0.01 1.55 16 29 H 0.26 15.62 8.31 -92.70 -0.77 14.85 16 30 H 0.33 12.78 4.72 -89.69 -0.42 12.36 16 31 H 0.06 2.08 5.62 -2.39 -0.01 2.07 16 32 H 0.02 0.52 7.06 -2.39 -0.02 0.50 16 33 H 0.06 1.20 7.96 -2.38 -0.02 1.18 16 34 H 0.08 1.34 7.96 -2.39 -0.02 1.32 16 35 H 0.06 1.42 5.93 -2.39 -0.01 1.41 16 36 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.07 1.20 7.32 -2.38 -0.02 1.18 16 40 H 0.05 1.34 5.47 -2.38 -0.01 1.32 16 41 H 0.05 1.01 8.09 -2.39 -0.02 0.99 16 42 H 0.05 1.84 7.10 -2.39 -0.02 1.82 16 43 H 0.09 2.06 4.03 -2.39 -0.01 2.05 16 44 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.08 1.53 7.59 -2.39 -0.02 1.52 16 49 H 0.05 1.25 6.41 -2.38 -0.02 1.24 16 Total: -1.00 -63.01 342.28 3.67 -59.34 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: 0.41 Total: 27.85 kcal Atomic # 6 Polarization: -49.52 SS G_CDS: 3.90 Total: -45.62 kcal Atomic # 7 Polarization: -86.67 SS G_CDS: -2.30 Total: -88.97 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.67 Total: 47.40 kcal Total: -63.01 3.67 -59.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094878818.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.906 kcal (2) G-P(sol) polarization free energy of solvation -63.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds