Wall clock time and date at job start Mon Mar 30 2020 06:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47143 * 2 1 4 4 C 1.53002 * 109.47081 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47226 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47287 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.46748 * 60.00224 * 6 5 4 8 8 C 1.52988 * 109.47236 * 300.00016 * 6 5 4 9 9 C 1.53003 * 109.46843 * 179.97438 * 6 5 4 10 10 N 1.46899 * 109.46790 * 185.48996 * 9 6 5 11 11 C 1.46899 * 111.00031 * 184.26431 * 10 9 6 12 12 C 1.53002 * 109.47233 * 185.37913 * 11 10 9 13 13 C 1.50703 * 115.54943 * 294.78694 * 12 11 10 14 14 H 1.08001 * 119.99361 * 95.09853 * 13 12 11 15 15 C 1.37874 * 120.00059 * 274.82309 * 13 12 11 16 16 N 1.31508 * 120.00151 * 355.42593 * 15 13 12 17 17 Si 1.86799 * 119.99958 * 175.41863 * 15 13 12 18 18 H 1.48507 * 109.47357 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46833 * 119.99881 * 17 15 13 20 20 H 1.48499 * 109.47634 * 240.00127 * 17 15 13 21 21 C 1.52996 * 117.50182 * 80.46218 * 12 11 10 22 22 C 1.53000 * 117.50060 * 149.12158 * 12 11 10 23 23 H 1.09001 * 109.46875 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46984 * 299.99769 * 1 2 3 25 25 H 1.08998 * 109.46954 * 59.99639 * 1 2 3 26 26 H 1.08996 * 109.47506 * 240.00189 * 2 1 3 27 27 H 1.08997 * 109.47437 * 119.99764 * 2 1 3 28 28 H 1.08997 * 109.46992 * 60.00236 * 3 2 1 29 29 H 1.09002 * 109.46661 * 299.99708 * 3 2 1 30 30 H 1.09000 * 109.47282 * 59.99543 * 4 3 2 31 31 H 1.09004 * 109.47095 * 299.99980 * 4 3 2 32 32 H 1.09000 * 109.47205 * 59.99051 * 5 4 3 33 33 H 1.09004 * 109.46999 * 299.99954 * 5 4 3 34 34 H 1.09008 * 109.47064 * 180.02562 * 7 6 5 35 35 H 1.09001 * 109.47256 * 299.99255 * 7 6 5 36 36 H 1.08991 * 109.47643 * 60.00011 * 7 6 5 37 37 H 1.09005 * 109.47296 * 304.95728 * 8 6 5 38 38 H 1.09002 * 109.47613 * 64.95698 * 8 6 5 39 39 H 1.09002 * 109.47373 * 184.96280 * 8 6 5 40 40 H 1.08992 * 109.46945 * 65.49197 * 9 6 5 41 41 H 1.09000 * 109.47311 * 305.48812 * 9 6 5 42 42 H 1.00902 * 110.99917 * 308.21298 * 10 9 6 43 43 H 1.09000 * 109.47478 * 65.37596 * 11 10 9 44 44 H 1.09003 * 109.46694 * 305.37552 * 11 10 9 45 45 H 0.97001 * 119.99788 * 185.00201 * 16 15 13 46 46 H 1.08996 * 117.49871 * 215.00473 * 21 12 11 47 47 H 1.09003 * 117.49992 * 0.02562 * 21 12 11 48 48 H 1.09005 * 117.49634 * 359.97328 * 22 12 11 49 49 H 1.08992 * 117.50153 * 144.97379 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0801 2.8850 0.0000 6 6 5.6100 2.8850 0.0000 7 6 6.1199 2.1644 -1.2496 8 6 6.1200 2.1633 1.2488 9 6 6.1200 4.3276 0.0000 10 7 7.5830 4.3297 -0.1325 11 6 8.1185 5.6941 -0.0349 12 6 9.6233 5.6723 -0.3103 13 6 10.4581 4.9271 0.6991 14 1 10.7240 3.8952 0.5235 15 6 10.8871 5.5644 1.8440 16 7 10.6450 6.8459 2.0133 17 14 11.8120 4.6075 3.1549 18 1 11.9549 3.1927 2.7267 19 1 13.1582 5.2046 3.3462 20 1 11.0589 4.6645 4.4334 21 6 10.0735 5.6255 -1.7718 22 6 10.2407 6.9124 -0.9600 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6767 1.9563 -0.8901 30 1 3.9330 0.9288 -0.8908 31 1 3.9337 0.9286 0.8891 32 1 3.7170 3.3984 0.8903 33 1 3.7164 3.3994 -0.8896 34 1 7.2100 2.1639 -1.2494 35 1 5.7567 1.1367 -1.2500 36 1 5.7567 2.6785 -2.1393 37 1 5.6860 2.6229 2.1368 38 1 5.8311 1.1131 1.2051 39 1 7.2064 2.2396 1.2944 40 1 5.8392 4.8121 0.9350 41 1 5.6786 4.8690 -0.8368 42 1 8.0090 3.7242 0.5531 43 1 7.9380 6.0845 0.9667 44 1 7.6241 6.3316 -0.7679 45 1 11.0087 7.3106 2.7832 46 1 10.9733 5.0557 -2.0032 47 1 9.2975 5.6107 -2.5372 48 1 9.5746 7.7436 -1.1916 49 1 11.2503 7.1894 -0.6571 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094987540.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:59 Heat of formation + Delta-G solvation = -21.070165 kcal Electronic energy + Delta-G solvation = -20987.603605 eV Core-core repulsion = 18141.652443 eV Total energy + Delta-G solvation = -2845.951162 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.54375 -36.71379 -35.55025 -33.13353 -31.85265 -30.51976 -26.98944 -26.56507 -26.31651 -25.22283 -23.38778 -21.66406 -21.01746 -20.79123 -19.09713 -18.16689 -15.96603 -15.90822 -15.20042 -14.76817 -14.57852 -14.38862 -14.02231 -13.82288 -13.53759 -13.27465 -12.94331 -12.76244 -12.52823 -12.18179 -11.96341 -11.60858 -11.49788 -11.34678 -11.19841 -11.14451 -11.06845 -10.98803 -10.93751 -10.82369 -10.57654 -10.42473 -10.22525 -10.14962 -10.07450 -9.97951 -9.23299 -8.79038 -8.35177 -7.99125 -7.39756 -5.98317 -4.05457 3.27980 3.37013 3.40838 4.42000 4.52597 4.74765 4.89176 4.95228 5.01935 5.12040 5.21614 5.29564 5.30504 5.45717 5.54592 5.57513 5.58912 5.68467 5.77790 5.83967 5.87960 5.89564 5.93741 6.03864 6.06241 6.09541 6.10655 6.25948 6.26625 6.30697 6.32136 6.35561 6.50183 6.54794 6.61707 6.70222 6.81589 6.90565 6.94369 6.98729 7.26085 7.57329 7.67032 7.91963 8.08219 8.36714 8.54969 8.98589 9.60120 11.08875 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.025653 B = 0.003580 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.212111 B = 7820.039688 C = 8424.887756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.121 4.121 5 C -0.107 4.107 6 C -0.062 4.062 7 C -0.130 4.130 8 C -0.146 4.146 9 C 0.068 3.932 10 N -0.678 5.678 11 C 0.106 3.894 12 C 0.047 3.953 13 C -0.490 4.490 14 H 0.060 0.940 15 C 0.068 3.932 16 N -0.880 5.880 17 Si 0.885 3.115 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.201 4.201 22 C -0.157 4.157 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.043 0.957 36 H 0.047 0.953 37 H 0.048 0.952 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.018 0.982 41 H 0.060 0.940 42 H 0.345 0.655 43 H 0.028 0.972 44 H 0.037 0.963 45 H 0.258 0.742 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.057 0.943 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.760 -9.872 -3.262 18.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.159 4.159 5 C -0.145 4.145 6 C -0.062 4.062 7 C -0.187 4.187 8 C -0.203 4.203 9 C -0.062 4.062 10 N -0.310 5.310 11 C -0.023 4.023 12 C 0.047 3.953 13 C -0.528 4.528 14 H 0.078 0.922 15 C -0.134 4.134 16 N -0.518 5.518 17 Si 0.713 3.287 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.238 4.238 22 C -0.195 4.195 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.036 0.964 41 H 0.078 0.922 42 H 0.166 0.834 43 H 0.046 0.954 44 H 0.055 0.945 45 H 0.068 0.932 46 H 0.090 0.910 47 H 0.082 0.918 48 H 0.076 0.924 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.795 -9.724 -3.775 18.928 hybrid contribution 0.442 -0.043 1.769 1.824 sum -15.353 -9.767 -2.007 18.307 Atomic orbital electron populations 1.21784 0.96189 1.01354 1.01711 1.21543 0.95565 0.97299 1.01906 1.21643 0.96047 0.96330 1.01800 1.21704 0.94515 0.97352 1.02306 1.21610 0.94880 0.96443 1.01557 1.20558 0.94009 0.95566 0.96111 1.21752 1.02635 0.98181 0.96136 1.21947 1.01770 0.99761 0.96823 1.21940 0.90619 0.94712 0.98913 1.60511 1.02290 1.11690 1.56506 1.21429 0.95371 0.87630 0.97872 1.18745 0.90334 0.96800 0.89443 1.20511 1.32251 0.97646 1.02360 0.92214 1.25009 0.95733 0.94884 0.97822 1.70020 1.44323 1.08207 1.29201 0.86646 0.79543 0.80500 0.81999 1.19633 1.21137 1.21114 1.22856 1.01598 1.02813 0.96521 1.22493 1.01609 0.90524 1.04888 0.92999 0.92863 0.92844 0.92143 0.92172 0.92282 0.92243 0.91677 0.91860 0.92435 0.92230 0.91027 0.93824 0.93380 0.93251 0.92772 0.91908 0.96374 0.92166 0.83445 0.95384 0.94483 0.93242 0.91026 0.91821 0.92443 0.90061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.72 16 2 C -0.13 -1.00 5.93 -26.73 -0.16 -1.16 16 3 C -0.12 -1.06 5.22 -26.73 -0.14 -1.20 16 4 C -0.12 -1.19 4.51 -26.73 -0.12 -1.31 16 5 C -0.11 -1.21 4.27 -26.73 -0.11 -1.32 16 6 C -0.06 -0.83 0.62 -154.51 -0.10 -0.92 16 7 C -0.13 -1.74 7.90 37.16 0.29 -1.45 16 8 C -0.15 -1.95 7.86 37.15 0.29 -1.66 16 9 C 0.07 1.10 4.66 -3.82 -0.02 1.09 16 10 N -0.68 -13.19 5.50 -113.78 -0.63 -13.81 16 11 C 0.11 2.39 5.54 -3.82 -0.02 2.37 16 12 C 0.05 1.18 1.65 -155.66 -0.26 0.92 16 13 C -0.49 -13.18 8.33 -34.44 -0.29 -13.47 16 14 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 15 C 0.07 1.86 5.43 -17.82 -0.10 1.76 16 16 N -0.88 -24.97 12.64 55.43 0.70 -24.27 16 17 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 C -0.20 -4.57 9.96 -26.70 -0.27 -4.84 16 22 C -0.16 -3.82 9.13 -26.70 -0.24 -4.06 16 23 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.65 6.43 -51.93 -0.33 0.31 16 31 H 0.06 0.63 6.54 -51.93 -0.34 0.30 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 1.10 7.46 -51.92 -0.39 0.72 16 35 H 0.04 0.51 6.43 -51.93 -0.33 0.18 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.64 6.71 -51.93 -0.35 0.29 16 39 H 0.06 0.94 6.41 -51.93 -0.33 0.61 16 40 H 0.02 0.31 8.13 -51.93 -0.42 -0.12 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.35 7.04 6.37 -39.29 -0.25 6.79 16 43 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.04 0.80 8.08 -51.93 -0.42 0.38 16 45 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 46 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 47 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 48 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 49 H 0.08 2.12 8.14 -51.93 -0.42 1.70 16 LS Contribution 377.03 15.07 5.68 5.68 Total: -1.00 -27.12 377.03 -10.03 -37.15 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -9.90 Total: 5.25 kcal Atomic # 6 Polarization: -25.11 SS G_CDS: -0.86 Total: -25.97 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.08 Total: -38.08 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -27.12 -10.03 -37.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094987540.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.082 kcal (2) G-P(sol) polarization free energy of solvation -27.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds