Wall clock time and date at job start Mon Mar 30 2020 06:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47143 * 2 1 4 4 C 1.53002 * 109.47081 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47226 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47287 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.46748 * 60.00224 * 6 5 4 8 8 C 1.52988 * 109.47236 * 300.00016 * 6 5 4 9 9 C 1.53003 * 109.46843 * 179.97438 * 6 5 4 10 10 N 1.46899 * 109.46790 * 185.48996 * 9 6 5 11 11 C 1.46899 * 111.00031 * 184.26431 * 10 9 6 12 12 C 1.53002 * 109.47233 * 185.37913 * 11 10 9 13 13 C 1.50703 * 115.54943 * 294.78694 * 12 11 10 14 14 H 1.08001 * 119.99361 * 95.09853 * 13 12 11 15 15 C 1.37874 * 120.00059 * 274.82309 * 13 12 11 16 16 N 1.31508 * 120.00151 * 355.42593 * 15 13 12 17 17 Si 1.86799 * 119.99958 * 175.41863 * 15 13 12 18 18 H 1.48507 * 109.47357 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46833 * 119.99881 * 17 15 13 20 20 H 1.48499 * 109.47634 * 240.00127 * 17 15 13 21 21 C 1.52996 * 117.50182 * 80.46218 * 12 11 10 22 22 C 1.53000 * 117.50060 * 149.12158 * 12 11 10 23 23 H 1.09001 * 109.46875 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46984 * 299.99769 * 1 2 3 25 25 H 1.08998 * 109.46954 * 59.99639 * 1 2 3 26 26 H 1.08996 * 109.47506 * 240.00189 * 2 1 3 27 27 H 1.08997 * 109.47437 * 119.99764 * 2 1 3 28 28 H 1.08997 * 109.46992 * 60.00236 * 3 2 1 29 29 H 1.09002 * 109.46661 * 299.99708 * 3 2 1 30 30 H 1.09000 * 109.47282 * 59.99543 * 4 3 2 31 31 H 1.09004 * 109.47095 * 299.99980 * 4 3 2 32 32 H 1.09000 * 109.47205 * 59.99051 * 5 4 3 33 33 H 1.09004 * 109.46999 * 299.99954 * 5 4 3 34 34 H 1.09008 * 109.47064 * 180.02562 * 7 6 5 35 35 H 1.09001 * 109.47256 * 299.99255 * 7 6 5 36 36 H 1.08991 * 109.47643 * 60.00011 * 7 6 5 37 37 H 1.09005 * 109.47296 * 304.95728 * 8 6 5 38 38 H 1.09002 * 109.47613 * 64.95698 * 8 6 5 39 39 H 1.09002 * 109.47373 * 184.96280 * 8 6 5 40 40 H 1.08992 * 109.46945 * 65.49197 * 9 6 5 41 41 H 1.09000 * 109.47311 * 305.48812 * 9 6 5 42 42 H 1.00902 * 110.99917 * 308.21298 * 10 9 6 43 43 H 1.09000 * 109.47478 * 65.37596 * 11 10 9 44 44 H 1.09003 * 109.46694 * 305.37552 * 11 10 9 45 45 H 0.97001 * 119.99788 * 185.00201 * 16 15 13 46 46 H 1.08996 * 117.49871 * 215.00473 * 21 12 11 47 47 H 1.09003 * 117.49992 * 0.02562 * 21 12 11 48 48 H 1.09005 * 117.49634 * 359.97328 * 22 12 11 49 49 H 1.08992 * 117.50153 * 144.97379 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0801 2.8850 0.0000 6 6 5.6100 2.8850 0.0000 7 6 6.1199 2.1644 -1.2496 8 6 6.1200 2.1633 1.2488 9 6 6.1200 4.3276 0.0000 10 7 7.5830 4.3297 -0.1325 11 6 8.1185 5.6941 -0.0349 12 6 9.6233 5.6723 -0.3103 13 6 10.4581 4.9271 0.6991 14 1 10.7240 3.8952 0.5235 15 6 10.8871 5.5644 1.8440 16 7 10.6450 6.8459 2.0133 17 14 11.8120 4.6075 3.1549 18 1 11.9549 3.1927 2.7267 19 1 13.1582 5.2046 3.3462 20 1 11.0589 4.6645 4.4334 21 6 10.0735 5.6255 -1.7718 22 6 10.2407 6.9124 -0.9600 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6767 1.9563 -0.8901 30 1 3.9330 0.9288 -0.8908 31 1 3.9337 0.9286 0.8891 32 1 3.7170 3.3984 0.8903 33 1 3.7164 3.3994 -0.8896 34 1 7.2100 2.1639 -1.2494 35 1 5.7567 1.1367 -1.2500 36 1 5.7567 2.6785 -2.1393 37 1 5.6860 2.6229 2.1368 38 1 5.8311 1.1131 1.2051 39 1 7.2064 2.2396 1.2944 40 1 5.8392 4.8121 0.9350 41 1 5.6786 4.8690 -0.8368 42 1 8.0090 3.7242 0.5531 43 1 7.9380 6.0845 0.9667 44 1 7.6241 6.3316 -0.7679 45 1 11.0087 7.3106 2.7832 46 1 10.9733 5.0557 -2.0032 47 1 9.2975 5.6107 -2.5372 48 1 9.5746 7.7436 -1.1916 49 1 11.2503 7.1894 -0.6571 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094987540.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:58 Heat of formation + Delta-G solvation = -32.823422 kcal Electronic energy + Delta-G solvation = -20988.113264 eV Core-core repulsion = 18141.652443 eV Total energy + Delta-G solvation = -2846.460821 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.72287 -38.43297 -36.47182 -34.49570 -33.90699 -31.41859 -28.15929 -28.03906 -27.37723 -27.00650 -24.73724 -22.85155 -22.49095 -21.73632 -21.00623 -19.32520 -17.91998 -16.66708 -16.64115 -16.60564 -16.00337 -15.61750 -15.38360 -14.99875 -14.59849 -14.53075 -14.11507 -14.03640 -13.75212 -13.36452 -13.21895 -13.05164 -12.88687 -12.86707 -12.59646 -12.50562 -12.45317 -12.28557 -12.00924 -11.96752 -11.86368 -11.78122 -11.43952 -11.32234 -11.20730 -11.13633 -10.90895 -10.78861 -10.35818 -9.90192 -9.04842 -8.07172 -6.19562 1.38846 1.42448 1.52876 2.43008 3.20016 3.32194 3.71103 3.89514 3.99713 4.01514 4.13739 4.21981 4.33226 4.36996 4.44602 4.62247 4.64527 4.69597 4.70477 4.78339 4.81361 4.84999 4.92283 4.94387 4.99530 5.02206 5.03874 5.08993 5.09683 5.12194 5.19490 5.20891 5.24144 5.29391 5.31910 5.37692 5.44002 5.48433 5.56354 5.64901 5.66848 5.71835 5.75349 5.82775 6.40324 6.49886 6.70576 6.90774 7.48655 8.99721 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.025653 B = 0.003580 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.212111 B = 7820.039688 C = 8424.887756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.118 4.118 4 C -0.116 4.116 5 C -0.101 4.101 6 C -0.056 4.056 7 C -0.125 4.125 8 C -0.144 4.144 9 C 0.068 3.932 10 N -0.673 5.673 11 C 0.120 3.880 12 C 0.025 3.975 13 C -0.499 4.499 14 H 0.052 0.948 15 C 0.022 3.978 16 N -0.910 5.910 17 Si 0.946 3.054 18 H -0.265 1.265 19 H -0.284 1.284 20 H -0.283 1.283 21 C -0.177 4.177 22 C -0.163 4.163 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.072 0.928 39 H 0.042 0.958 40 H 0.010 0.990 41 H 0.064 0.936 42 H 0.339 0.661 43 H -0.004 1.004 44 H 0.045 0.955 45 H 0.257 0.743 46 H 0.070 0.930 47 H 0.084 0.916 48 H 0.067 0.933 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.978 -11.369 -3.649 20.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.155 4.155 4 C -0.153 4.153 5 C -0.139 4.139 6 C -0.056 4.056 7 C -0.182 4.182 8 C -0.201 4.201 9 C -0.062 4.062 10 N -0.304 5.304 11 C -0.010 4.010 12 C 0.024 3.976 13 C -0.537 4.537 14 H 0.071 0.929 15 C -0.177 4.177 16 N -0.548 5.548 17 Si 0.773 3.227 18 H -0.189 1.189 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.215 4.215 22 C -0.201 4.201 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.061 0.939 40 H 0.028 0.972 41 H 0.083 0.917 42 H 0.159 0.841 43 H 0.014 0.986 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.089 0.911 47 H 0.103 0.897 48 H 0.086 0.914 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.020 -11.233 -4.175 20.816 hybrid contribution 0.805 0.427 1.853 2.065 sum -16.216 -10.807 -2.322 19.625 Atomic orbital electron populations 1.21783 0.95623 1.01836 1.01807 1.21536 0.96093 0.96670 1.01984 1.21607 0.95174 0.96946 1.01814 1.21653 0.95274 0.96049 1.02372 1.21551 0.92959 0.97696 1.01695 1.20517 0.95486 0.93413 0.96219 1.21693 1.01098 0.99390 0.96002 1.21931 1.00362 1.01011 0.96811 1.22047 0.88537 0.96988 0.98586 1.60507 1.04161 1.09648 1.56102 1.21169 0.94357 0.89296 0.96151 1.18906 0.91323 0.97034 0.90342 1.20721 1.32387 0.97452 1.03137 0.92943 1.25678 0.96755 0.95637 0.99658 1.70128 1.45393 1.09495 1.29804 0.85685 0.78184 0.79467 0.79413 1.18919 1.21033 1.20909 1.22823 1.01806 1.01021 0.95807 1.22397 1.00521 0.91321 1.05907 0.92365 0.92852 0.92691 0.91980 0.92191 0.92410 0.92118 0.91449 0.91879 0.92556 0.91890 0.93276 0.91891 0.93286 0.93323 0.90870 0.93939 0.97224 0.91731 0.84135 0.98619 0.93642 0.93345 0.91112 0.89733 0.91415 0.92465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 71.98 0.71 -1.17 16 2 C -0.13 -1.73 5.93 30.60 0.18 -1.54 16 3 C -0.12 -1.81 5.22 30.60 0.16 -1.65 16 4 C -0.12 -2.00 4.51 30.59 0.14 -1.87 16 5 C -0.10 -2.08 4.27 30.59 0.13 -1.95 16 6 C -0.06 -1.42 0.62 -52.19 -0.03 -1.45 16 7 C -0.12 -3.12 7.90 71.98 0.57 -2.55 16 8 C -0.14 -3.68 7.86 71.98 0.57 -3.11 16 9 C 0.07 2.16 4.66 86.30 0.40 2.56 16 10 N -0.67 -26.07 5.50 -513.89 -2.83 -28.89 16 11 C 0.12 5.44 5.54 86.30 0.48 5.92 16 12 C 0.02 1.22 1.65 -52.93 -0.09 1.13 16 13 C -0.50 -27.07 8.33 25.60 0.21 -26.86 16 14 H 0.05 2.86 7.82 -2.91 -0.02 2.84 16 15 C 0.02 1.23 5.43 84.65 0.46 1.69 16 16 N -0.91 -52.41 12.64 21.45 0.27 -52.14 16 17 Si 0.95 43.40 29.54 68.60 2.03 45.42 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 C -0.18 -7.92 9.96 30.62 0.30 -7.61 16 22 C -0.16 -7.97 9.13 30.62 0.28 -7.69 16 23 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.05 0.65 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 1.15 6.43 -2.39 -0.02 1.13 16 31 H 0.06 1.10 6.54 -2.39 -0.02 1.09 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.05 1.46 7.46 -2.38 -0.02 1.44 16 35 H 0.06 1.33 6.43 -2.39 -0.02 1.31 16 36 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.07 1.58 6.71 -2.39 -0.02 1.56 16 39 H 0.04 1.25 6.41 -2.39 -0.02 1.24 16 40 H 0.01 0.32 8.13 -2.39 -0.02 0.30 16 41 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.34 13.95 6.37 -89.69 -0.57 13.38 16 43 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 44 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 45 H 0.26 14.21 8.32 -92.71 -0.77 13.44 16 46 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 47 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 48 H 0.07 3.11 8.14 -2.38 -0.02 3.09 16 49 H 0.06 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -57.24 377.03 4.24 -53.00 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 0.29 Total: 28.77 kcal Atomic # 6 Polarization: -50.63 SS G_CDS: 4.47 Total: -46.16 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -2.55 Total: -81.03 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -57.24 4.24 -53.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094987540.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.175 kcal (2) G-P(sol) polarization free energy of solvation -57.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds