Wall clock time and date at job start Mon Mar 30 2020 07:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47790 * 2 1 4 4 H 1.09003 * 109.46766 * 55.00085 * 3 2 1 5 5 C 1.52996 * 109.46910 * 295.00630 * 3 2 1 6 6 C 1.52999 * 109.47109 * 299.99234 * 5 3 2 7 7 C 1.52999 * 109.47408 * 300.00676 * 6 5 3 8 8 C 1.53005 * 109.47450 * 59.99443 * 7 6 5 9 9 C 1.52991 * 109.47290 * 174.99780 * 3 2 1 10 10 H 1.08997 * 109.47530 * 180.02562 * 9 3 2 11 11 N 1.46897 * 109.47681 * 300.00764 * 9 3 2 12 12 C 1.46910 * 110.99637 * 303.95164 * 11 9 3 13 13 C 1.50696 * 109.47278 * 161.36974 * 12 11 9 14 14 H 1.08002 * 119.99693 * 354.54706 * 13 12 11 15 15 C 1.37874 * 120.00290 * 174.55335 * 13 12 11 16 16 N 1.31520 * 119.99739 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00265 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47104 * 60.00012 * 17 15 13 19 19 H 1.48500 * 109.47283 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47111 * 299.99707 * 17 15 13 21 21 C 1.46893 * 111.00274 * 180.02562 * 11 9 3 22 22 C 1.53001 * 109.47367 * 201.47277 * 21 11 9 23 23 C 1.53004 * 109.46981 * 61.08203 * 22 21 11 24 24 C 1.52994 * 109.47495 * 181.08370 * 22 21 11 25 25 H 1.09004 * 109.47059 * 59.99089 * 1 2 3 26 26 H 1.08999 * 109.47500 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46966 * 300.00082 * 1 2 3 28 28 H 1.08999 * 109.46966 * 239.99918 * 2 1 3 29 29 H 1.09004 * 109.47059 * 120.00911 * 2 1 3 30 30 H 1.09008 * 109.46750 * 179.97438 * 5 3 2 31 31 H 1.08995 * 109.47764 * 59.99932 * 5 3 2 32 32 H 1.09001 * 109.47469 * 180.02562 * 6 5 3 33 33 H 1.08999 * 109.46945 * 60.00456 * 6 5 3 34 34 H 1.09008 * 109.46995 * 299.99865 * 7 6 5 35 35 H 1.09003 * 109.47399 * 179.97438 * 7 6 5 36 36 H 1.08995 * 109.47677 * 179.97438 * 8 7 6 37 37 H 1.09008 * 109.46677 * 60.00227 * 8 7 6 38 38 H 1.09005 * 109.46845 * 281.37002 * 12 11 9 39 39 H 1.08999 * 109.46936 * 41.36855 * 12 11 9 40 40 H 0.96996 * 120.00103 * 180.02562 * 16 15 13 41 41 H 1.08994 * 109.47421 * 321.47283 * 21 11 9 42 42 H 1.08999 * 109.47457 * 81.47409 * 21 11 9 43 43 H 1.09006 * 109.47412 * 301.08652 * 22 21 11 44 44 H 1.09000 * 109.47175 * 180.02562 * 23 22 21 45 45 H 1.09003 * 109.46862 * 300.00110 * 23 22 21 46 46 H 1.08997 * 109.46700 * 60.00288 * 23 22 21 47 47 H 1.09003 * 109.47099 * 60.00092 * 24 22 21 48 48 H 1.09000 * 109.47074 * 179.97438 * 24 22 21 49 49 H 1.09002 * 109.47621 * 300.00098 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 1 1.6056 1.9815 0.8419 5 6 1.6353 2.1265 -1.3073 6 6 2.2453 1.3699 -2.4889 7 6 3.7701 1.3716 -2.3633 8 6 4.1750 0.6875 -1.0559 9 6 3.5649 1.4441 0.1258 10 1 3.9283 2.4717 0.1262 11 7 3.9535 0.7872 1.3809 12 6 3.3092 1.4311 2.5335 13 6 3.3444 0.4969 3.7154 14 1 3.7196 -0.5090 3.5975 15 6 2.8976 0.9261 4.9470 16 7 2.4411 2.1512 5.0905 17 14 2.9406 -0.2322 6.4119 18 1 4.3407 -0.6568 6.6663 19 1 2.4100 0.4656 7.6105 20 1 2.1058 -1.4260 6.1236 21 6 5.4141 0.7708 1.5362 22 6 5.8107 -0.3368 2.5143 23 6 5.3640 -1.6910 1.9596 24 6 7.3297 -0.3364 2.6969 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 1.9984 3.1543 -1.3070 31 1 0.5491 2.1254 -1.3968 32 1 1.9573 1.8575 -3.4203 33 1 1.8819 0.3423 -2.4890 34 1 4.1336 2.3993 -2.3632 35 1 4.2047 0.8322 -3.2049 36 1 5.2613 0.6883 -0.9666 37 1 3.8115 -0.3402 -1.0560 38 1 3.8412 2.3499 2.7806 39 1 2.2739 1.6659 2.2866 40 1 2.1271 2.4533 5.9571 41 1 5.8804 0.5851 0.5687 42 1 5.7494 1.7335 1.9222 43 1 5.3290 -0.1616 3.4764 44 1 5.6461 -2.4801 2.6567 45 1 4.2818 -1.6913 1.8296 46 1 5.8457 -1.8662 0.9977 47 1 7.6478 0.6283 3.0921 48 1 7.6120 -1.1252 3.3941 49 1 7.8114 -0.5117 1.7349 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104388648.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:41 Heat of formation + Delta-G solvation = -25.707310 kcal Electronic energy + Delta-G solvation = -22926.112101 eV Core-core repulsion = 20079.959858 eV Total energy + Delta-G solvation = -2846.152243 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.49246 -36.55833 -33.49372 -32.86352 -32.40010 -29.49030 -28.45669 -26.92270 -26.40675 -24.49920 -23.21062 -22.23894 -21.23907 -20.21730 -19.00502 -17.70236 -16.43039 -15.69621 -14.92291 -14.73485 -14.39561 -14.10636 -13.66845 -13.43884 -13.23151 -12.94155 -12.64590 -12.47927 -12.18245 -12.03806 -11.85367 -11.64483 -11.60804 -11.25038 -11.07580 -10.98014 -10.82316 -10.72134 -10.66771 -10.47839 -10.27497 -10.20801 -10.07210 -9.95953 -9.81577 -9.41846 -9.30480 -9.19327 -8.84927 -8.27389 -7.07958 -5.96114 -3.93807 3.35451 3.40044 3.42671 4.45653 4.83892 5.04024 5.06532 5.31367 5.37656 5.54735 5.61565 5.66860 5.70754 5.71860 5.79642 5.84494 5.87754 5.93330 6.00329 6.05571 6.10241 6.16655 6.21690 6.27096 6.31035 6.35998 6.39467 6.42034 6.47474 6.49073 6.57719 6.61387 6.62789 6.73176 6.79220 6.85288 6.90739 7.01606 7.15470 7.23837 7.40388 7.46943 7.51923 7.94035 8.24623 8.34796 8.67598 9.12725 9.67279 11.14210 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.016556 B = 0.007441 C = 0.005910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.861726 B = 3762.204076 C = 4736.799587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C -0.080 4.080 4 H 0.079 0.921 5 C -0.115 4.115 6 C -0.118 4.118 7 C -0.116 4.116 8 C -0.113 4.113 9 C 0.093 3.907 10 H 0.022 0.978 11 N -0.526 5.526 12 C 0.187 3.813 13 C -0.500 4.500 14 H 0.076 0.924 15 C 0.054 3.946 16 N -0.899 5.899 17 Si 0.888 3.112 18 H -0.277 1.277 19 H -0.290 1.290 20 H -0.277 1.277 21 C 0.074 3.926 22 C -0.111 4.111 23 C -0.127 4.127 24 C -0.143 4.143 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.071 0.929 38 H -0.010 1.010 39 H 0.034 0.966 40 H 0.259 0.741 41 H 0.051 0.949 42 H 0.019 0.981 43 H 0.116 0.884 44 H 0.032 0.968 45 H 0.071 0.929 46 H 0.032 0.968 47 H 0.046 0.954 48 H 0.046 0.954 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.009 -2.758 -12.284 12.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C -0.098 4.098 4 H 0.097 0.903 5 C -0.153 4.153 6 C -0.155 4.155 7 C -0.154 4.154 8 C -0.151 4.151 9 C -0.016 4.016 10 H 0.040 0.960 11 N -0.250 5.250 12 C 0.062 3.938 13 C -0.538 4.538 14 H 0.094 0.906 15 C -0.147 4.147 16 N -0.539 5.539 17 Si 0.716 3.284 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.203 1.203 21 C -0.054 4.054 22 C -0.129 4.129 23 C -0.184 4.184 24 C -0.201 4.201 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.104 0.896 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.008 0.992 39 H 0.052 0.948 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.038 0.962 43 H 0.134 0.866 44 H 0.051 0.949 45 H 0.090 0.910 46 H 0.051 0.949 47 H 0.065 0.935 48 H 0.065 0.935 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.765 -3.115 -12.158 12.674 hybrid contribution 0.330 0.457 0.969 1.121 sum 2.095 -2.658 -11.189 11.690 Atomic orbital electron populations 1.21826 0.97379 1.00576 1.01078 1.21502 0.94048 0.96412 1.02806 1.21213 0.94818 0.97024 0.96791 0.90334 1.21600 0.99933 0.98762 0.94982 1.21551 0.95559 1.00885 0.97551 1.21512 0.95945 1.00413 0.97534 1.21683 0.99723 1.00296 0.93399 1.21445 0.94610 0.94750 0.90793 0.96031 1.62115 1.06506 1.54383 1.02017 1.19884 0.94356 0.92922 0.86627 1.21349 1.40361 0.99456 0.92648 0.90641 1.24983 0.95855 0.95028 0.98830 1.69952 1.43241 1.16550 1.24193 0.86714 0.78377 0.81059 0.82212 1.20294 1.21571 1.20252 1.21978 0.89131 0.96851 0.97417 1.21554 0.93618 0.94794 1.02933 1.21617 1.02713 0.95816 0.98266 1.21833 0.97463 1.00721 1.00093 0.93668 0.93678 0.92831 0.92756 0.89634 0.92787 0.92132 0.93051 0.91661 0.92668 0.92699 0.92472 0.91076 0.99171 0.94849 0.93112 0.93055 0.96247 0.86639 0.94853 0.90982 0.94901 0.93519 0.93500 0.94130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.67 37.16 0.36 -1.87 16 2 C -0.11 -1.79 4.61 -26.73 -0.12 -1.91 16 3 C -0.08 -1.33 1.77 -90.63 -0.16 -1.49 16 4 H 0.08 1.55 5.98 -51.93 -0.31 1.24 16 5 C -0.11 -1.59 5.21 -26.73 -0.14 -1.73 16 6 C -0.12 -1.44 5.65 -26.73 -0.15 -1.59 16 7 C -0.12 -1.45 5.92 -26.73 -0.16 -1.61 16 8 C -0.11 -1.67 4.78 -26.73 -0.13 -1.79 16 9 C 0.09 1.62 1.64 -67.72 -0.11 1.51 16 10 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 11 N -0.53 -10.56 2.74 -228.09 -0.63 -11.19 16 12 C 0.19 4.62 4.59 -4.97 -0.02 4.60 16 13 C -0.50 -13.18 7.18 -34.44 -0.25 -13.43 16 14 H 0.08 1.95 5.01 -52.49 -0.26 1.68 16 15 C 0.05 1.48 5.46 -17.82 -0.10 1.39 16 16 N -0.90 -26.25 13.29 55.43 0.74 -25.52 16 17 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C 0.07 1.42 4.29 -3.83 -0.02 1.41 16 22 C -0.11 -2.08 2.42 -90.62 -0.22 -2.30 16 23 C -0.13 -2.21 8.56 37.16 0.32 -1.90 16 24 C -0.14 -2.30 9.19 37.15 0.34 -1.96 16 25 H 0.04 0.59 6.57 -51.93 -0.34 0.25 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.81 4.83 -51.93 -0.25 0.56 16 29 H 0.09 1.65 7.45 -51.93 -0.39 1.26 16 30 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 31 H 0.06 0.79 6.56 -51.93 -0.34 0.45 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.80 6.32 -51.93 -0.33 0.47 16 34 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.84 6.02 -51.93 -0.31 0.53 16 37 H 0.07 1.08 6.55 -51.92 -0.34 0.74 16 38 H -0.01 -0.27 7.73 -51.93 -0.40 -0.67 16 39 H 0.03 0.88 5.38 -51.93 -0.28 0.60 16 40 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.05 0.88 5.51 -51.93 -0.29 0.60 16 42 H 0.02 0.40 7.71 -51.93 -0.40 0.00 16 43 H 0.12 2.60 4.74 -51.93 -0.25 2.36 16 44 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.07 1.38 7.19 -51.93 -0.37 1.01 16 46 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 48 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 347.38 15.07 5.23 5.23 Total: -1.00 -26.96 347.38 -9.30 -36.25 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -9.07 Total: 1.57 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: -0.56 Total: -22.69 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.11 Total: -36.71 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -26.96 -9.30 -36.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104388648.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.547 kcal (2) G-P(sol) polarization free energy of solvation -26.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds