Wall clock time and date at job start Mon Mar 30 2020 07:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47790 * 2 1 4 4 H 1.09003 * 109.46766 * 55.00085 * 3 2 1 5 5 C 1.52996 * 109.46910 * 295.00630 * 3 2 1 6 6 C 1.52999 * 109.47109 * 299.99234 * 5 3 2 7 7 C 1.52999 * 109.47408 * 300.00676 * 6 5 3 8 8 C 1.53005 * 109.47450 * 59.99443 * 7 6 5 9 9 C 1.52991 * 109.47290 * 174.99780 * 3 2 1 10 10 H 1.08997 * 109.47530 * 180.02562 * 9 3 2 11 11 N 1.46897 * 109.47681 * 300.00764 * 9 3 2 12 12 C 1.46910 * 110.99637 * 303.95164 * 11 9 3 13 13 C 1.50696 * 109.47278 * 161.36974 * 12 11 9 14 14 H 1.08002 * 119.99693 * 354.54706 * 13 12 11 15 15 C 1.37874 * 120.00290 * 174.55335 * 13 12 11 16 16 N 1.31520 * 119.99739 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00265 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47104 * 60.00012 * 17 15 13 19 19 H 1.48500 * 109.47283 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47111 * 299.99707 * 17 15 13 21 21 C 1.46893 * 111.00274 * 180.02562 * 11 9 3 22 22 C 1.53001 * 109.47367 * 201.47277 * 21 11 9 23 23 C 1.53004 * 109.46981 * 61.08203 * 22 21 11 24 24 C 1.52994 * 109.47495 * 181.08370 * 22 21 11 25 25 H 1.09004 * 109.47059 * 59.99089 * 1 2 3 26 26 H 1.08999 * 109.47500 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46966 * 300.00082 * 1 2 3 28 28 H 1.08999 * 109.46966 * 239.99918 * 2 1 3 29 29 H 1.09004 * 109.47059 * 120.00911 * 2 1 3 30 30 H 1.09008 * 109.46750 * 179.97438 * 5 3 2 31 31 H 1.08995 * 109.47764 * 59.99932 * 5 3 2 32 32 H 1.09001 * 109.47469 * 180.02562 * 6 5 3 33 33 H 1.08999 * 109.46945 * 60.00456 * 6 5 3 34 34 H 1.09008 * 109.46995 * 299.99865 * 7 6 5 35 35 H 1.09003 * 109.47399 * 179.97438 * 7 6 5 36 36 H 1.08995 * 109.47677 * 179.97438 * 8 7 6 37 37 H 1.09008 * 109.46677 * 60.00227 * 8 7 6 38 38 H 1.09005 * 109.46845 * 281.37002 * 12 11 9 39 39 H 1.08999 * 109.46936 * 41.36855 * 12 11 9 40 40 H 0.96996 * 120.00103 * 180.02562 * 16 15 13 41 41 H 1.08994 * 109.47421 * 321.47283 * 21 11 9 42 42 H 1.08999 * 109.47457 * 81.47409 * 21 11 9 43 43 H 1.09006 * 109.47412 * 301.08652 * 22 21 11 44 44 H 1.09000 * 109.47175 * 180.02562 * 23 22 21 45 45 H 1.09003 * 109.46862 * 300.00110 * 23 22 21 46 46 H 1.08997 * 109.46700 * 60.00288 * 23 22 21 47 47 H 1.09003 * 109.47099 * 60.00092 * 24 22 21 48 48 H 1.09000 * 109.47074 * 179.97438 * 24 22 21 49 49 H 1.09002 * 109.47621 * 300.00098 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 1 1.6056 1.9815 0.8419 5 6 1.6353 2.1265 -1.3073 6 6 2.2453 1.3699 -2.4889 7 6 3.7701 1.3716 -2.3633 8 6 4.1750 0.6875 -1.0559 9 6 3.5649 1.4441 0.1258 10 1 3.9283 2.4717 0.1262 11 7 3.9535 0.7872 1.3809 12 6 3.3092 1.4311 2.5335 13 6 3.3444 0.4969 3.7154 14 1 3.7196 -0.5090 3.5975 15 6 2.8976 0.9261 4.9470 16 7 2.4411 2.1512 5.0905 17 14 2.9406 -0.2322 6.4119 18 1 4.3407 -0.6568 6.6663 19 1 2.4100 0.4656 7.6105 20 1 2.1058 -1.4260 6.1236 21 6 5.4141 0.7708 1.5362 22 6 5.8107 -0.3368 2.5143 23 6 5.3640 -1.6910 1.9596 24 6 7.3297 -0.3364 2.6969 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 1.9984 3.1543 -1.3070 31 1 0.5491 2.1254 -1.3968 32 1 1.9573 1.8575 -3.4203 33 1 1.8819 0.3423 -2.4890 34 1 4.1336 2.3993 -2.3632 35 1 4.2047 0.8322 -3.2049 36 1 5.2613 0.6883 -0.9666 37 1 3.8115 -0.3402 -1.0560 38 1 3.8412 2.3499 2.7806 39 1 2.2739 1.6659 2.2866 40 1 2.1271 2.4533 5.9571 41 1 5.8804 0.5851 0.5687 42 1 5.7494 1.7335 1.9222 43 1 5.3290 -0.1616 3.4764 44 1 5.6461 -2.4801 2.6567 45 1 4.2818 -1.6913 1.8296 46 1 5.8457 -1.8662 0.9977 47 1 7.6478 0.6283 3.0921 48 1 7.6120 -1.1252 3.3941 49 1 7.8114 -0.5117 1.7349 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104388648.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:40 Heat of formation + Delta-G solvation = -38.256535 kcal Electronic energy + Delta-G solvation = -22926.656276 eV Core-core repulsion = 20079.959858 eV Total energy + Delta-G solvation = -2846.696418 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.87774 -38.05887 -35.12112 -34.37579 -34.04621 -30.86907 -29.82224 -28.72881 -27.77754 -26.15872 -24.53928 -23.80681 -22.54484 -21.66277 -20.59315 -19.01142 -18.39590 -17.19956 -16.62481 -16.31173 -15.80800 -15.57746 -15.05236 -14.89898 -14.70087 -14.18778 -14.08656 -14.04761 -13.71299 -13.51487 -13.24328 -13.16908 -12.91534 -12.82214 -12.61090 -12.50505 -12.29664 -12.20358 -12.08366 -11.93098 -11.83189 -11.64715 -11.55905 -11.37727 -11.19850 -10.96933 -10.80017 -10.70925 -10.61816 -10.28670 -8.84082 -8.10548 -6.14405 1.40738 1.42685 1.49633 2.43476 3.20878 3.32231 3.82648 3.88093 4.10763 4.23037 4.33088 4.34239 4.40767 4.45409 4.51436 4.54667 4.62479 4.65865 4.73395 4.81064 4.84833 4.89770 4.94585 4.97104 4.97989 5.09393 5.13833 5.16727 5.18949 5.24083 5.27110 5.31673 5.34955 5.36416 5.40290 5.43256 5.50568 5.51541 5.60652 5.69553 5.71688 5.84710 5.86161 5.92345 6.23367 6.54163 6.82207 7.00552 7.50891 8.99845 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.016556 B = 0.007441 C = 0.005910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.861726 B = 3762.204076 C = 4736.799587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.102 4.102 3 C -0.078 4.078 4 H 0.034 0.966 5 C -0.110 4.110 6 C -0.113 4.113 7 C -0.112 4.112 8 C -0.104 4.104 9 C 0.088 3.912 10 H 0.001 0.999 11 N -0.519 5.519 12 C 0.207 3.793 13 C -0.497 4.497 14 H 0.082 0.918 15 C -0.003 4.003 16 N -0.940 5.940 17 Si 0.952 3.048 18 H -0.268 1.268 19 H -0.290 1.290 20 H -0.269 1.269 21 C 0.075 3.925 22 C -0.112 4.112 23 C -0.118 4.118 24 C -0.137 4.137 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.029 0.971 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.072 0.928 38 H -0.054 1.054 39 H 0.013 0.987 40 H 0.258 0.742 41 H 0.080 0.920 42 H -0.007 1.007 43 H 0.074 0.926 44 H 0.043 0.957 45 H 0.049 0.951 46 H 0.056 0.944 47 H 0.039 0.961 48 H 0.057 0.943 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.820 -4.829 -14.683 15.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.139 4.139 3 C -0.097 4.097 4 H 0.053 0.947 5 C -0.148 4.148 6 C -0.150 4.150 7 C -0.150 4.150 8 C -0.142 4.142 9 C -0.021 4.021 10 H 0.019 0.981 11 N -0.243 5.243 12 C 0.080 3.920 13 C -0.536 4.536 14 H 0.100 0.900 15 C -0.199 4.199 16 N -0.582 5.582 17 Si 0.778 3.222 18 H -0.193 1.193 19 H -0.216 1.216 20 H -0.194 1.194 21 C -0.053 4.053 22 C -0.131 4.131 23 C -0.175 4.175 24 C -0.194 4.194 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.048 0.952 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.091 0.909 38 H -0.037 1.037 39 H 0.031 0.969 40 H 0.067 0.933 41 H 0.098 0.902 42 H 0.011 0.989 43 H 0.092 0.908 44 H 0.062 0.938 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.058 0.942 48 H 0.076 0.924 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.587 -5.203 -14.575 15.690 hybrid contribution 0.096 1.147 1.674 2.032 sum 2.683 -4.055 -12.901 13.787 Atomic orbital electron populations 1.21784 0.96179 1.01445 1.00998 1.21393 0.95094 0.95489 1.01958 1.21142 0.94025 0.97419 0.97113 0.94726 1.21566 1.00751 0.98476 0.94034 1.21541 0.95088 1.01057 0.97333 1.21510 0.96337 1.00443 0.96723 1.21615 0.99568 0.99966 0.93018 1.21627 0.95566 0.94057 0.90807 0.98066 1.62110 1.07090 1.53540 1.01531 1.19497 0.93001 0.91126 0.88335 1.21679 1.39002 0.99759 0.93132 0.89973 1.25820 0.95803 0.96462 1.01840 1.70105 1.44859 1.18539 1.24701 0.85689 0.78791 0.79106 0.78640 1.19277 1.21613 1.19369 1.22049 0.88364 0.95900 0.98939 1.21453 0.95539 0.95495 1.00587 1.21507 1.01345 0.94979 0.99666 1.21756 0.95115 1.00846 1.01722 0.91410 0.92320 0.95223 0.90540 0.93304 0.93251 0.91133 0.90620 0.91043 0.92778 0.90058 0.92147 0.90905 1.03665 0.96947 0.93326 0.90176 0.98865 0.90830 0.93810 0.93234 0.92532 0.94219 0.92390 0.91708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.24 9.67 71.98 0.70 -3.54 16 2 C -0.10 -3.28 4.61 30.59 0.14 -3.14 16 3 C -0.08 -2.68 1.77 -10.80 -0.02 -2.70 16 4 H 0.03 1.48 5.98 -2.39 -0.01 1.46 16 5 C -0.11 -2.92 5.21 30.59 0.16 -2.76 16 6 C -0.11 -2.36 5.65 30.59 0.17 -2.18 16 7 C -0.11 -2.42 5.92 30.60 0.18 -2.24 16 8 C -0.10 -2.84 4.78 30.60 0.15 -2.69 16 9 C 0.09 3.14 1.64 44.91 0.07 3.21 16 10 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 11 N -0.52 -21.69 2.74 -875.55 -2.40 -24.09 16 12 C 0.21 10.96 4.59 85.55 0.39 11.35 16 13 C -0.50 -27.49 7.18 25.60 0.18 -27.30 16 14 H 0.08 4.37 5.01 -2.91 -0.01 4.35 16 15 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 16 N -0.94 -57.70 13.29 21.45 0.28 -57.42 16 17 Si 0.95 44.91 29.54 68.60 2.03 46.93 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 19 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 21 C 0.08 2.92 4.29 86.30 0.37 3.29 16 22 C -0.11 -4.18 2.42 -10.79 -0.03 -4.21 16 23 C -0.12 -3.91 8.56 71.98 0.62 -3.29 16 24 C -0.14 -4.16 9.19 71.98 0.66 -3.49 16 25 H 0.07 1.64 6.57 -2.38 -0.02 1.62 16 26 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.08 2.11 4.83 -2.39 -0.01 2.10 16 29 H 0.05 1.93 7.45 -2.38 -0.02 1.91 16 30 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.07 1.72 6.56 -2.39 -0.02 1.71 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.44 6.32 -2.39 -0.02 1.43 16 34 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.06 1.61 6.02 -2.39 -0.01 1.59 16 37 H 0.07 1.99 6.55 -2.38 -0.02 1.98 16 38 H -0.05 -3.31 7.73 -2.38 -0.02 -3.33 16 39 H 0.01 0.72 5.38 -2.39 -0.01 0.71 16 40 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 41 H 0.08 2.64 5.51 -2.39 -0.01 2.62 16 42 H -0.01 -0.31 7.71 -2.39 -0.02 -0.32 16 43 H 0.07 3.39 4.74 -2.38 -0.01 3.38 16 44 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.05 1.86 7.19 -2.39 -0.02 1.84 16 46 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -62.41 347.38 5.01 -57.39 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.89 Total: 16.57 kcal Atomic # 6 Polarization: -43.60 SS G_CDS: 4.21 Total: -39.39 kcal Atomic # 7 Polarization: -79.39 SS G_CDS: -2.12 Total: -81.51 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -62.41 5.01 -57.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104388648.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.137 kcal (2) G-P(sol) polarization free energy of solvation -62.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds