Wall clock time and date at job start Mon Mar 30 2020 07:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47631 * 2 1 4 4 H 1.09002 * 109.46963 * 305.00127 * 3 2 1 5 5 C 1.53005 * 109.47368 * 64.99733 * 3 2 1 6 6 C 1.52993 * 109.47369 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.46980 * 299.99915 * 6 5 3 8 8 C 1.52997 * 109.47288 * 60.00201 * 7 6 5 9 9 C 1.52997 * 109.47273 * 299.99854 * 8 7 6 10 10 H 1.08994 * 109.47154 * 300.00068 * 9 8 7 11 11 N 1.46895 * 109.47576 * 179.97438 * 9 8 7 12 12 C 1.46902 * 111.00333 * 306.04921 * 11 9 8 13 13 C 1.50696 * 109.47470 * 189.99437 * 12 11 9 14 14 H 1.08003 * 120.00087 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99956 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00308 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99908 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46845 * 60.00735 * 17 15 13 19 19 H 1.48503 * 109.47399 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47295 * 300.00832 * 17 15 13 21 21 C 1.46901 * 110.99851 * 69.99910 * 11 9 8 22 22 C 1.52998 * 109.46893 * 66.04926 * 21 11 9 23 23 C 1.53002 * 109.47240 * 64.99925 * 22 21 11 24 24 C 1.53001 * 109.47379 * 185.00298 * 22 21 11 25 25 H 1.08998 * 109.46687 * 59.99862 * 1 2 3 26 26 H 1.08998 * 109.47190 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46735 * 300.00231 * 1 2 3 28 28 H 1.09006 * 109.47031 * 239.99399 * 2 1 3 29 29 H 1.09007 * 109.46974 * 120.00245 * 2 1 3 30 30 H 1.09002 * 109.46757 * 60.00268 * 5 3 2 31 31 H 1.09001 * 109.47054 * 300.00559 * 5 3 2 32 32 H 1.09000 * 109.47240 * 180.02562 * 6 5 3 33 33 H 1.08994 * 109.47346 * 59.99921 * 6 5 3 34 34 H 1.09002 * 109.47344 * 300.00245 * 7 6 5 35 35 H 1.09007 * 109.47049 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.47342 * 179.97438 * 8 7 6 37 37 H 1.09006 * 109.47381 * 59.99667 * 8 7 6 38 38 H 1.09001 * 109.47165 * 69.99411 * 12 11 9 39 39 H 1.09004 * 109.46739 * 310.00078 * 12 11 9 40 40 H 0.97000 * 119.99806 * 0.02562 * 16 15 13 41 41 H 1.09000 * 109.47664 * 186.04543 * 21 11 9 42 42 H 1.08997 * 109.47182 * 306.05212 * 21 11 9 43 43 H 1.09005 * 109.47221 * 304.99644 * 22 21 11 44 44 H 1.09003 * 109.47259 * 180.02562 * 23 22 21 45 45 H 1.08992 * 109.47099 * 299.99851 * 23 22 21 46 46 H 1.08996 * 109.47071 * 60.00304 * 23 22 21 47 47 H 1.08998 * 109.47239 * 59.99291 * 24 22 21 48 48 H 1.09003 * 109.47260 * 179.97438 * 24 22 21 49 49 H 1.09006 * 109.46870 * 299.99573 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 -0.8418 5 6 1.6354 2.1265 1.3073 6 6 2.1449 3.5691 1.3071 7 6 3.6697 3.5713 1.1811 8 6 4.0745 2.8873 -0.1262 9 6 3.5650 1.4447 -0.1260 10 1 3.9998 0.9059 0.7158 11 7 3.9531 0.7880 -1.3814 12 6 3.5048 1.5669 -2.5434 13 6 3.6983 0.7544 -3.7978 14 1 4.1124 -0.2412 -3.7378 15 6 3.3457 1.2817 -5.0219 16 7 2.8410 2.4939 -5.0951 17 14 3.5849 0.2743 -6.5767 18 1 2.7905 -0.9769 -6.4829 19 1 3.1319 1.0618 -7.7515 20 1 5.0228 -0.0627 -6.7319 21 6 5.4033 0.5587 -1.4291 22 6 5.7949 -0.4549 -0.3520 23 6 5.1601 -1.8098 -0.6716 24 6 7.3176 -0.6004 -0.3181 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5139 0.8899 28 1 1.8934 -0.5140 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.0700 1.5875 2.1492 31 1 0.5491 2.1253 1.3969 32 1 1.8570 4.0564 2.2386 33 1 1.7101 4.1079 0.4653 34 1 4.1047 3.0325 2.0229 35 1 4.0328 4.5992 1.1814 36 1 5.1608 2.8893 -0.2161 37 1 3.6396 3.4261 -0.9681 38 1 4.0878 2.4854 -2.6120 39 1 2.4493 1.8142 -2.4298 40 1 2.7171 3.0172 -4.2878 41 1 5.6778 0.1707 -2.4100 42 1 5.9258 1.4985 -1.2508 43 1 5.4415 -0.1080 0.6191 44 1 5.4388 -2.5318 0.0960 45 1 4.0754 -1.7061 -0.6956 46 1 5.5136 -2.1566 -1.6425 47 1 7.7699 0.3649 -0.0904 48 1 7.5967 -1.3221 0.4496 49 1 7.6712 -0.9473 -1.2891 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104388650.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:43 Heat of formation + Delta-G solvation = -43.137051 kcal Electronic energy + Delta-G solvation = -22827.459143 eV Core-core repulsion = 19980.551089 eV Total energy + Delta-G solvation = -2846.908053 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.51037 -36.42893 -34.02274 -33.55064 -32.40239 -29.18713 -28.39847 -26.76904 -26.51088 -24.28735 -23.47307 -22.49504 -20.80623 -20.32785 -19.62584 -18.49741 -16.57518 -15.53186 -15.07818 -14.46377 -14.19951 -14.03010 -13.73368 -13.64578 -13.53527 -13.25335 -12.89869 -12.72953 -12.43372 -11.95937 -11.91631 -11.76345 -11.60706 -11.30709 -11.11909 -11.00496 -10.99444 -10.79079 -10.69687 -10.68048 -10.48617 -10.38489 -10.16292 -10.07045 -9.99061 -9.76625 -9.58228 -9.38976 -8.56378 -8.30081 -7.11075 -6.30453 -3.98169 3.46394 3.48424 3.66719 4.55469 4.78075 4.95634 5.06327 5.18334 5.33309 5.39016 5.43557 5.45495 5.50383 5.60080 5.63644 5.73853 5.81242 5.81588 5.85000 5.92744 5.95916 6.04613 6.05266 6.10800 6.14280 6.25852 6.26767 6.29688 6.35459 6.41151 6.43667 6.45984 6.49538 6.55833 6.58250 6.65336 6.72995 6.87040 6.91139 6.94929 7.02886 7.17868 7.24487 7.93226 8.13302 8.44034 8.67045 8.94658 9.71701 11.08394 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.013169 B = 0.007555 C = 0.006274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.714387 B = 3705.470100 C = 4462.013766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.109 4.109 3 C -0.076 4.076 4 H 0.072 0.928 5 C -0.113 4.113 6 C -0.119 4.119 7 C -0.112 4.112 8 C -0.153 4.153 9 C 0.089 3.911 10 H 0.069 0.931 11 N -0.516 5.516 12 C 0.183 3.817 13 C -0.583 4.583 14 H 0.055 0.945 15 C 0.013 3.987 16 N -0.916 5.916 17 Si 1.068 2.932 18 H -0.288 1.288 19 H -0.284 1.284 20 H -0.290 1.290 21 C 0.067 3.933 22 C -0.094 4.094 23 C -0.133 4.133 24 C -0.144 4.144 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.084 0.916 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.067 0.933 38 H -0.020 1.020 39 H 0.023 0.977 40 H 0.266 0.734 41 H 0.083 0.917 42 H 0.017 0.983 43 H 0.061 0.939 44 H 0.035 0.965 45 H 0.068 0.932 46 H 0.049 0.951 47 H 0.047 0.953 48 H 0.048 0.952 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.432 -2.636 13.320 13.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.147 4.147 3 C -0.094 4.094 4 H 0.090 0.910 5 C -0.151 4.151 6 C -0.156 4.156 7 C -0.150 4.150 8 C -0.192 4.192 9 C -0.021 4.021 10 H 0.087 0.913 11 N -0.238 5.238 12 C 0.057 3.943 13 C -0.622 4.622 14 H 0.073 0.927 15 C -0.190 4.190 16 N -0.553 5.553 17 Si 0.897 3.103 18 H -0.215 1.215 19 H -0.210 1.210 20 H -0.216 1.216 21 C -0.061 4.061 22 C -0.112 4.112 23 C -0.190 4.190 24 C -0.202 4.202 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.103 0.897 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.086 0.914 38 H -0.003 1.003 39 H 0.041 0.959 40 H 0.076 0.924 41 H 0.101 0.899 42 H 0.036 0.964 43 H 0.079 0.921 44 H 0.054 0.946 45 H 0.087 0.913 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.998 -3.085 11.622 12.066 hybrid contribution 0.667 0.909 1.690 2.031 sum 1.665 -2.176 13.312 13.591 Atomic orbital electron populations 1.21824 0.97147 1.00731 1.01144 1.21425 0.94264 0.96433 1.02559 1.21154 0.94970 0.96333 0.96979 0.90953 1.21629 1.00182 0.95280 0.97973 1.21531 0.95894 0.97183 1.01037 1.21453 0.95841 0.99783 0.97904 1.22234 1.00589 0.98684 0.97732 1.21703 0.94792 0.91454 0.94107 0.91307 1.62200 1.12370 1.47735 1.01532 1.19820 0.94783 0.91725 0.87956 1.21991 1.45485 1.02848 0.91860 0.92654 1.25751 0.94217 0.97341 1.01681 1.70792 1.42234 1.10013 1.32282 0.83553 0.76213 0.75000 0.75574 1.21464 1.20970 1.21628 1.22047 0.88850 0.95933 0.99295 1.21162 0.94269 0.96785 0.99031 1.21670 1.02245 0.95113 0.99999 1.21811 0.96251 1.00785 1.01389 0.92901 0.93501 0.93498 0.89719 0.93367 0.92566 0.92127 0.92737 0.92139 0.92621 0.92851 0.92574 0.91429 1.00277 0.95866 0.92402 0.89891 0.96442 0.92108 0.94591 0.91263 0.93208 0.93380 0.93295 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.67 37.16 0.36 -1.80 16 2 C -0.11 -1.74 5.32 -26.73 -0.14 -1.88 16 3 C -0.08 -1.24 1.52 -90.62 -0.14 -1.38 16 4 H 0.07 1.40 6.36 -51.93 -0.33 1.07 16 5 C -0.11 -1.53 4.96 -26.73 -0.13 -1.66 16 6 C -0.12 -1.57 5.92 -26.74 -0.16 -1.73 16 7 C -0.11 -1.54 5.92 -26.73 -0.16 -1.70 16 8 C -0.15 -2.59 4.47 -26.73 -0.12 -2.71 16 9 C 0.09 1.53 1.51 -67.71 -0.10 1.42 16 10 H 0.07 1.14 6.00 -51.93 -0.31 0.82 16 11 N -0.52 -10.44 3.05 -228.09 -0.70 -11.13 16 12 C 0.18 4.53 2.98 -4.98 -0.01 4.52 16 13 C -0.58 -16.15 8.37 -34.44 -0.29 -16.44 16 14 H 0.06 1.54 7.18 -52.48 -0.38 1.16 16 15 C 0.01 0.38 5.46 -17.82 -0.10 0.29 16 16 N -0.92 -27.80 13.65 55.43 0.76 -27.04 16 17 Si 1.07 25.45 29.90 -169.99 -5.08 20.37 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 21 C 0.07 1.28 4.08 -3.82 -0.02 1.26 16 22 C -0.09 -1.46 2.85 -90.62 -0.26 -1.72 16 23 C -0.13 -2.06 9.08 37.16 0.34 -1.73 16 24 C -0.14 -1.95 9.19 37.16 0.34 -1.61 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.59 6.56 -51.93 -0.34 0.25 16 28 H 0.08 1.60 7.45 -51.93 -0.39 1.21 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.77 6.57 -51.93 -0.34 0.43 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.97 6.58 -51.93 -0.34 0.63 16 37 H 0.07 1.31 6.55 -51.93 -0.34 0.97 16 38 H -0.02 -0.55 6.69 -51.93 -0.35 -0.89 16 39 H 0.02 0.62 5.95 -51.93 -0.31 0.31 16 40 H 0.27 8.05 7.22 -40.82 -0.29 7.76 16 41 H 0.08 1.80 6.65 -51.93 -0.35 1.45 16 42 H 0.02 0.34 6.40 -51.93 -0.33 0.01 16 43 H 0.06 0.93 6.17 -51.93 -0.32 0.61 16 44 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 1.18 7.75 -51.93 -0.40 0.78 16 46 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 355.17 15.07 5.35 5.35 Total: -1.00 -28.42 355.17 -9.67 -38.09 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -9.41 Total: 1.22 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: -0.59 Total: -26.85 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.06 Total: -38.17 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -5.08 Total: 20.37 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.42 -9.67 -38.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104388650.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.052 kcal (2) G-P(sol) polarization free energy of solvation -28.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds