Wall clock time and date at job start Mon Mar 30 2020 07:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47631 * 2 1 4 4 H 1.09002 * 109.46963 * 305.00127 * 3 2 1 5 5 C 1.53005 * 109.47368 * 64.99733 * 3 2 1 6 6 C 1.52993 * 109.47369 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.46980 * 299.99915 * 6 5 3 8 8 C 1.52997 * 109.47288 * 60.00201 * 7 6 5 9 9 C 1.52997 * 109.47273 * 299.99854 * 8 7 6 10 10 H 1.08994 * 109.47154 * 300.00068 * 9 8 7 11 11 N 1.46895 * 109.47576 * 179.97438 * 9 8 7 12 12 C 1.46902 * 111.00333 * 306.04921 * 11 9 8 13 13 C 1.50696 * 109.47470 * 189.99437 * 12 11 9 14 14 H 1.08003 * 120.00087 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99956 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00308 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99908 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46845 * 60.00735 * 17 15 13 19 19 H 1.48503 * 109.47399 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47295 * 300.00832 * 17 15 13 21 21 C 1.46901 * 110.99851 * 69.99910 * 11 9 8 22 22 C 1.52998 * 109.46893 * 66.04926 * 21 11 9 23 23 C 1.53002 * 109.47240 * 64.99925 * 22 21 11 24 24 C 1.53001 * 109.47379 * 185.00298 * 22 21 11 25 25 H 1.08998 * 109.46687 * 59.99862 * 1 2 3 26 26 H 1.08998 * 109.47190 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46735 * 300.00231 * 1 2 3 28 28 H 1.09006 * 109.47031 * 239.99399 * 2 1 3 29 29 H 1.09007 * 109.46974 * 120.00245 * 2 1 3 30 30 H 1.09002 * 109.46757 * 60.00268 * 5 3 2 31 31 H 1.09001 * 109.47054 * 300.00559 * 5 3 2 32 32 H 1.09000 * 109.47240 * 180.02562 * 6 5 3 33 33 H 1.08994 * 109.47346 * 59.99921 * 6 5 3 34 34 H 1.09002 * 109.47344 * 300.00245 * 7 6 5 35 35 H 1.09007 * 109.47049 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.47342 * 179.97438 * 8 7 6 37 37 H 1.09006 * 109.47381 * 59.99667 * 8 7 6 38 38 H 1.09001 * 109.47165 * 69.99411 * 12 11 9 39 39 H 1.09004 * 109.46739 * 310.00078 * 12 11 9 40 40 H 0.97000 * 119.99806 * 0.02562 * 16 15 13 41 41 H 1.09000 * 109.47664 * 186.04543 * 21 11 9 42 42 H 1.08997 * 109.47182 * 306.05212 * 21 11 9 43 43 H 1.09005 * 109.47221 * 304.99644 * 22 21 11 44 44 H 1.09003 * 109.47259 * 180.02562 * 23 22 21 45 45 H 1.08992 * 109.47099 * 299.99851 * 23 22 21 46 46 H 1.08996 * 109.47071 * 60.00304 * 23 22 21 47 47 H 1.08998 * 109.47239 * 59.99291 * 24 22 21 48 48 H 1.09003 * 109.47260 * 179.97438 * 24 22 21 49 49 H 1.09006 * 109.46870 * 299.99573 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 -0.8418 5 6 1.6354 2.1265 1.3073 6 6 2.1449 3.5691 1.3071 7 6 3.6697 3.5713 1.1811 8 6 4.0745 2.8873 -0.1262 9 6 3.5650 1.4447 -0.1260 10 1 3.9998 0.9059 0.7158 11 7 3.9531 0.7880 -1.3814 12 6 3.5048 1.5669 -2.5434 13 6 3.6983 0.7544 -3.7978 14 1 4.1124 -0.2412 -3.7378 15 6 3.3457 1.2817 -5.0219 16 7 2.8410 2.4939 -5.0951 17 14 3.5849 0.2743 -6.5767 18 1 2.7905 -0.9769 -6.4829 19 1 3.1319 1.0618 -7.7515 20 1 5.0228 -0.0627 -6.7319 21 6 5.4033 0.5587 -1.4291 22 6 5.7949 -0.4549 -0.3520 23 6 5.1601 -1.8098 -0.6716 24 6 7.3176 -0.6004 -0.3181 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5139 0.8899 28 1 1.8934 -0.5140 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.0700 1.5875 2.1492 31 1 0.5491 2.1253 1.3969 32 1 1.8570 4.0564 2.2386 33 1 1.7101 4.1079 0.4653 34 1 4.1047 3.0325 2.0229 35 1 4.0328 4.5992 1.1814 36 1 5.1608 2.8893 -0.2161 37 1 3.6396 3.4261 -0.9681 38 1 4.0878 2.4854 -2.6120 39 1 2.4493 1.8142 -2.4298 40 1 2.7171 3.0172 -4.2878 41 1 5.6778 0.1707 -2.4100 42 1 5.9258 1.4985 -1.2508 43 1 5.4415 -0.1080 0.6191 44 1 5.4388 -2.5318 0.0960 45 1 4.0754 -1.7061 -0.6956 46 1 5.5136 -2.1566 -1.6425 47 1 7.7699 0.3649 -0.0904 48 1 7.5967 -1.3221 0.4496 49 1 7.6712 -0.9473 -1.2891 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104388650.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:43 Heat of formation + Delta-G solvation = -57.017829 kcal Electronic energy + Delta-G solvation = -22828.061058 eV Core-core repulsion = 19980.551089 eV Total energy + Delta-G solvation = -2847.509969 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.95034 -37.81111 -35.75283 -34.79856 -34.26101 -30.57264 -29.75060 -28.41227 -27.90126 -26.03224 -24.71850 -24.30962 -22.21047 -21.58199 -20.94336 -20.06511 -18.61064 -17.02354 -16.54274 -15.79630 -15.68582 -15.56929 -15.47730 -15.13422 -14.84986 -14.50301 -14.14824 -14.06377 -13.87413 -13.69186 -13.36441 -13.22993 -13.02796 -12.79011 -12.70627 -12.55826 -12.32933 -12.23050 -12.09583 -11.99060 -11.94843 -11.76966 -11.62965 -11.51559 -11.46456 -11.06736 -10.96932 -10.82248 -10.63178 -10.50696 -8.85572 -8.62306 -6.32485 1.49847 1.58403 1.77355 2.55311 3.16536 3.25857 3.65631 3.84367 3.90169 4.08425 4.14107 4.19208 4.24697 4.33624 4.40400 4.43939 4.51157 4.55573 4.58312 4.68828 4.80157 4.80667 4.81351 4.87011 4.88147 4.93749 5.01430 5.05024 5.09229 5.10314 5.15124 5.16425 5.20267 5.25226 5.26062 5.29161 5.33455 5.40973 5.43771 5.53605 5.60619 5.64468 5.70908 5.90031 6.09156 6.50503 6.54248 6.77730 7.47017 8.74267 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.013169 B = 0.007555 C = 0.006274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.714387 B = 3705.470100 C = 4462.013766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 C -0.074 4.074 4 H 0.030 0.970 5 C -0.105 4.105 6 C -0.118 4.118 7 C -0.105 4.105 8 C -0.149 4.149 9 C 0.089 3.911 10 H 0.091 0.909 11 N -0.516 5.516 12 C 0.205 3.795 13 C -0.590 4.590 14 H 0.051 0.949 15 C -0.039 4.039 16 N -0.940 5.940 17 Si 1.115 2.885 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.271 1.271 21 C 0.069 3.931 22 C -0.084 4.084 23 C -0.129 4.129 24 C -0.140 4.140 25 H 0.029 0.971 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.039 0.961 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.048 0.952 37 H 0.027 0.973 38 H -0.051 1.051 39 H 0.000 1.000 40 H 0.251 0.749 41 H 0.050 0.950 42 H 0.010 0.990 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.049 0.951 46 H 0.036 0.964 47 H 0.051 0.949 48 H 0.074 0.926 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.938 -4.078 16.008 16.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.142 4.142 3 C -0.093 4.093 4 H 0.048 0.952 5 C -0.143 4.143 6 C -0.156 4.156 7 C -0.143 4.143 8 C -0.188 4.188 9 C -0.019 4.019 10 H 0.108 0.892 11 N -0.238 5.238 12 C 0.078 3.922 13 C -0.628 4.628 14 H 0.069 0.931 15 C -0.236 4.236 16 N -0.579 5.579 17 Si 0.937 3.063 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.196 1.196 21 C -0.059 4.059 22 C -0.103 4.103 23 C -0.186 4.186 24 C -0.198 4.198 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.046 0.954 38 H -0.033 1.033 39 H 0.018 0.982 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.028 0.972 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.068 0.932 46 H 0.055 0.945 47 H 0.071 0.929 48 H 0.093 0.907 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.513 -4.532 14.343 15.118 hybrid contribution 0.524 1.368 0.884 1.710 sum 2.037 -3.165 15.227 15.685 Atomic orbital electron populations 1.21781 0.95801 1.01603 1.01176 1.21344 0.95475 0.95671 1.01701 1.21123 0.93985 0.96692 0.97476 0.95151 1.21592 1.01130 0.95214 0.96377 1.21544 0.95219 0.97087 1.01726 1.21432 0.96479 1.00167 0.96235 1.22157 0.99731 0.98414 0.98510 1.21829 0.95695 0.91602 0.92798 0.89160 1.62144 1.13237 1.47085 1.01338 1.19380 0.92911 0.90561 0.89352 1.22315 1.44566 1.02754 0.93158 0.93078 1.27268 0.93402 0.97544 1.05413 1.70924 1.44347 1.11133 1.31473 0.82960 0.77428 0.74143 0.71812 1.19614 1.21030 1.19638 1.22043 0.87910 0.96664 0.99270 1.21104 0.96061 0.95451 0.97686 1.21621 1.00882 0.95700 1.00398 1.21775 0.94158 1.01838 1.02006 0.95144 0.92225 0.91146 0.93461 0.91161 0.90313 0.90931 0.89678 0.94203 0.90326 0.91986 0.93310 0.95380 1.03345 0.98228 0.94009 0.93148 0.97209 0.90898 0.91611 0.93180 0.94459 0.92942 0.90693 0.93364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.04 9.67 71.98 0.70 -3.35 16 2 C -0.10 -3.27 5.32 30.59 0.16 -3.11 16 3 C -0.07 -2.43 1.52 -10.79 -0.02 -2.45 16 4 H 0.03 1.25 6.36 -2.39 -0.02 1.24 16 5 C -0.11 -2.60 4.96 30.59 0.15 -2.45 16 6 C -0.12 -2.89 5.92 30.59 0.18 -2.71 16 7 C -0.11 -2.70 5.92 30.59 0.18 -2.52 16 8 C -0.15 -5.15 4.47 30.59 0.14 -5.01 16 9 C 0.09 3.08 1.51 44.92 0.07 3.15 16 10 H 0.09 2.78 6.00 -2.39 -0.01 2.76 16 11 N -0.52 -21.77 3.05 -875.54 -2.67 -24.44 16 12 C 0.20 10.90 2.98 85.56 0.25 11.16 16 13 C -0.59 -34.27 8.37 25.60 0.21 -34.05 16 14 H 0.05 2.96 7.18 -2.91 -0.02 2.94 16 15 C -0.04 -2.33 5.46 84.65 0.46 -1.87 16 16 N -0.94 -59.76 13.65 21.45 0.29 -59.47 16 17 Si 1.11 52.07 29.90 68.60 2.05 54.12 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 21 C 0.07 2.72 4.08 86.30 0.35 3.07 16 22 C -0.08 -2.50 2.85 -10.79 -0.03 -2.53 16 23 C -0.13 -3.81 9.08 71.98 0.65 -3.15 16 24 C -0.14 -3.45 9.19 71.98 0.66 -2.78 16 25 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.07 1.61 6.56 -2.39 -0.02 1.59 16 28 H 0.05 1.83 7.45 -2.38 -0.02 1.81 16 29 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.07 1.64 6.57 -2.39 -0.02 1.63 16 32 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.05 1.72 6.58 -2.39 -0.02 1.70 16 37 H 0.03 1.17 6.55 -2.38 -0.02 1.15 16 38 H -0.05 -2.98 6.69 -2.39 -0.02 -3.00 16 39 H 0.00 -0.01 5.95 -2.39 -0.01 -0.03 16 40 H 0.25 16.27 7.22 -92.71 -0.67 15.60 16 41 H 0.05 2.28 6.65 -2.39 -0.02 2.27 16 42 H 0.01 0.39 6.40 -2.39 -0.02 0.38 16 43 H 0.07 2.01 6.17 -2.38 -0.01 2.00 16 44 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 45 H 0.05 1.67 7.75 -2.39 -0.02 1.65 16 46 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -65.87 355.17 4.78 -61.09 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.97 Total: 17.31 kcal Atomic # 6 Polarization: -52.74 SS G_CDS: 4.13 Total: -48.61 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -2.38 Total: -83.91 kcal Atomic # 14 Polarization: 52.07 SS G_CDS: 2.05 Total: 54.12 kcal Total: -65.87 4.78 -61.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104388650.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.077 kcal (2) G-P(sol) polarization free energy of solvation -65.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds