Wall clock time and date at job start Mon Mar 30 2020 07:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47017 * 2 1 4 4 H 1.09001 * 109.47506 * 54.42516 * 3 2 1 5 5 C 1.53002 * 109.47190 * 294.42854 * 3 2 1 6 6 C 1.53001 * 109.47521 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47185 * 59.99637 * 6 5 3 8 8 C 1.53001 * 109.47019 * 300.00220 * 7 6 5 9 9 C 1.52997 * 109.46990 * 59.99965 * 8 7 6 10 10 H 1.09001 * 109.47506 * 60.00010 * 9 8 7 11 11 N 1.46905 * 109.47122 * 179.97438 * 9 8 7 12 12 C 1.46908 * 110.99586 * 46.64390 * 11 9 8 13 13 C 1.50698 * 109.46858 * 76.88933 * 12 11 9 14 14 H 1.08000 * 120.00173 * 0.82132 * 13 12 11 15 15 C 1.37877 * 119.99888 * 180.82026 * 13 12 11 16 16 N 1.31510 * 120.00132 * 179.72510 * 15 13 12 17 17 Si 1.86808 * 119.99812 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.46966 * 269.72243 * 17 15 13 19 19 H 1.48493 * 109.46798 * 29.72363 * 17 15 13 20 20 H 1.48501 * 109.46829 * 149.72610 * 17 15 13 21 21 C 1.46894 * 111.00126 * 282.68873 * 11 9 8 22 22 C 1.53001 * 109.47069 * 199.82442 * 21 11 9 23 23 C 1.52997 * 109.46807 * 66.45095 * 22 21 11 24 24 C 1.52999 * 109.47368 * 186.45211 * 22 21 11 25 25 H 1.09002 * 109.47744 * 299.99890 * 1 2 3 26 26 H 1.08998 * 109.47144 * 60.00559 * 1 2 3 27 27 H 1.09002 * 109.47083 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47744 * 240.00110 * 2 1 3 29 29 H 1.08998 * 109.47144 * 119.99441 * 2 1 3 30 30 H 1.08994 * 109.47281 * 59.99609 * 5 3 2 31 31 H 1.09006 * 109.47065 * 300.00099 * 5 3 2 32 32 H 1.09006 * 109.46552 * 299.99705 * 6 5 3 33 33 H 1.08994 * 109.47070 * 180.02562 * 6 5 3 34 34 H 1.08994 * 109.47002 * 180.02562 * 7 6 5 35 35 H 1.08993 * 109.46852 * 60.00149 * 7 6 5 36 36 H 1.08992 * 109.47151 * 300.00232 * 8 7 6 37 37 H 1.08999 * 109.47124 * 179.97438 * 8 7 6 38 38 H 1.09000 * 109.46861 * 316.89272 * 12 11 9 39 39 H 1.08995 * 109.46900 * 196.88631 * 12 11 9 40 40 H 0.97007 * 119.99822 * 180.27114 * 16 15 13 41 41 H 1.08994 * 109.47642 * 319.82731 * 21 11 9 42 42 H 1.09006 * 109.46935 * 79.82998 * 21 11 9 43 43 H 1.09009 * 109.47188 * 306.45380 * 22 21 11 44 44 H 1.09006 * 109.46668 * 179.97438 * 23 22 21 45 45 H 1.08992 * 109.47434 * 300.00090 * 23 22 21 46 46 H 1.09002 * 109.47200 * 60.00537 * 23 22 21 47 47 H 1.09010 * 109.47021 * 60.00155 * 24 22 21 48 48 H 1.08993 * 109.47385 * 179.97438 * 24 22 21 49 49 H 1.09001 * 109.46889 * 300.00523 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5974 1.9844 0.8358 5 6 1.6475 2.1222 -1.3134 6 6 2.1580 3.5645 -1.3137 7 6 3.6816 3.5663 -1.1739 8 6 4.0740 2.8867 0.1395 9 6 3.5635 1.4444 0.1398 10 1 4.0057 0.9022 -0.6961 11 7 3.9408 0.7916 1.4006 12 6 3.6390 1.6543 2.5508 13 6 2.1591 1.6158 2.8328 14 1 1.5098 1.0008 2.2274 15 6 1.6341 2.3658 3.8638 16 7 0.3420 2.3365 4.1065 17 14 2.7572 3.4302 4.9105 18 1 3.2454 2.6425 6.0709 19 1 3.9141 3.8797 4.0953 20 1 2.0047 4.6142 5.3973 21 6 5.3579 0.4051 1.3898 22 6 5.6006 -0.6727 2.4482 23 6 4.8616 -1.9523 2.0516 24 6 7.1000 -0.9601 2.5490 25 1 -0.3635 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 0.5621 2.1205 -1.4132 31 1 2.0900 1.5803 -2.1493 32 1 1.7157 4.1066 -0.4778 33 1 1.8780 4.0488 -2.2492 34 1 4.0452 4.5938 -1.1737 35 1 4.1237 3.0242 -2.0097 36 1 3.6318 3.4287 0.9753 37 1 5.1594 2.8876 0.2389 38 1 3.9396 2.6776 2.3262 39 1 4.1847 1.2986 3.4247 40 1 -0.0279 2.8673 4.8294 41 1 5.6207 0.0147 0.4067 42 1 5.9739 1.2768 1.6111 43 1 5.2318 -0.3243 3.4130 44 1 5.0349 -2.7204 2.8055 45 1 3.7935 -1.7477 1.9798 46 1 5.2305 -2.3009 1.0870 47 1 7.6265 -0.0484 2.8316 48 1 7.2729 -1.7276 3.3033 49 1 7.4688 -1.3085 1.5843 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104388654.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:46 Heat of formation + Delta-G solvation = -26.232668 kcal Electronic energy + Delta-G solvation = -23070.231809 eV Core-core repulsion = 20224.056785 eV Total energy + Delta-G solvation = -2846.175024 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.32560 -36.42228 -33.81347 -33.30031 -32.23472 -28.98081 -28.21814 -27.75877 -26.70223 -24.09403 -23.27888 -22.28093 -20.42969 -20.08267 -19.02532 -18.60147 -16.76818 -15.38429 -14.83589 -14.69766 -14.15118 -13.96054 -13.76024 -13.44888 -13.33628 -12.97049 -12.58221 -12.55394 -12.29730 -12.18307 -11.91144 -11.80398 -11.55324 -11.32209 -10.93590 -10.83975 -10.77925 -10.60556 -10.51809 -10.48628 -10.37011 -10.28878 -10.05207 -9.95984 -9.79801 -9.54639 -9.40127 -9.17397 -8.82543 -8.43180 -7.12904 -5.98307 -3.91479 3.29955 3.38107 3.40403 4.46931 4.74889 5.22909 5.27481 5.32781 5.32971 5.40109 5.44611 5.65515 5.71698 5.79221 5.84999 5.96898 5.99264 6.01481 6.06606 6.08228 6.12741 6.15429 6.17292 6.20881 6.22385 6.35494 6.40762 6.42823 6.51255 6.53530 6.57210 6.63016 6.68279 6.76739 6.83309 6.87663 6.93657 6.96568 7.01116 7.10888 7.17515 7.39631 7.61371 7.77685 8.04841 8.21695 8.76283 9.15954 9.64936 11.13269 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.010783 B = 0.010203 C = 0.007442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.967012 B = 2743.514836 C = 3761.557020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.101 4.101 3 C -0.092 4.092 4 H 0.124 0.876 5 C -0.113 4.113 6 C -0.118 4.118 7 C -0.109 4.109 8 C -0.155 4.155 9 C 0.109 3.891 10 H 0.055 0.945 11 N -0.516 5.516 12 C 0.149 3.851 13 C -0.503 4.503 14 H 0.103 0.897 15 C 0.069 3.931 16 N -0.900 5.900 17 Si 0.862 3.138 18 H -0.279 1.279 19 H -0.269 1.269 20 H -0.289 1.289 21 C 0.061 3.939 22 C -0.093 4.093 23 C -0.132 4.132 24 C -0.144 4.144 25 H 0.065 0.935 26 H 0.040 0.960 27 H 0.038 0.962 28 H 0.034 0.966 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.045 0.955 38 H 0.002 0.998 39 H 0.017 0.983 40 H 0.261 0.739 41 H 0.057 0.943 42 H 0.020 0.980 43 H 0.074 0.926 44 H 0.038 0.962 45 H 0.074 0.926 46 H 0.040 0.960 47 H 0.047 0.953 48 H 0.050 0.950 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.536 -2.424 -8.731 11.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.139 4.139 3 C -0.110 4.110 4 H 0.142 0.858 5 C -0.151 4.151 6 C -0.156 4.156 7 C -0.148 4.148 8 C -0.194 4.194 9 C 0.001 3.999 10 H 0.073 0.927 11 N -0.238 5.238 12 C 0.023 3.977 13 C -0.541 4.541 14 H 0.120 0.880 15 C -0.132 4.132 16 N -0.540 5.540 17 Si 0.690 3.310 18 H -0.205 1.205 19 H -0.194 1.194 20 H -0.215 1.215 21 C -0.068 4.068 22 C -0.112 4.112 23 C -0.190 4.190 24 C -0.202 4.202 25 H 0.084 0.916 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.064 0.936 38 H 0.020 0.980 39 H 0.035 0.965 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.039 0.961 43 H 0.092 0.908 44 H 0.058 0.942 45 H 0.093 0.907 46 H 0.059 0.941 47 H 0.066 0.934 48 H 0.069 0.931 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.121 -2.793 -8.553 11.474 hybrid contribution 1.168 1.459 0.630 1.972 sum 8.289 -1.334 -7.923 11.544 Atomic orbital electron populations 1.21814 0.97223 1.00104 1.01687 1.21345 0.94380 0.96845 1.01294 1.21608 0.94273 0.96817 0.98351 0.85842 1.21644 1.00115 0.95030 0.98282 1.21516 0.95537 0.97643 1.00864 1.21426 0.96263 0.99430 0.97645 1.22283 0.99461 0.99321 0.98333 1.21480 0.96198 0.90989 0.91283 0.92720 1.62122 1.15485 1.43381 1.02833 1.20429 0.98223 0.90701 0.88389 1.21383 0.91040 1.26608 1.15073 0.87967 1.24874 0.94620 0.96695 0.97015 1.69875 1.11076 1.41659 1.31343 0.87065 0.81547 0.80848 0.81509 1.20495 1.19435 1.21528 1.22089 0.90399 0.96234 0.98048 1.21098 0.94012 0.96152 0.99888 1.21665 1.02342 0.95692 0.99277 1.21829 0.96583 1.00818 1.01008 0.91635 0.94053 0.94312 0.94745 0.89916 0.92283 0.93545 0.91723 0.93240 0.93145 0.92998 0.89931 0.93582 0.98038 0.96459 0.92923 0.92442 0.96145 0.90798 0.94242 0.90734 0.94058 0.93363 0.93056 0.93236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.67 37.15 0.36 -2.30 16 2 C -0.10 -1.83 4.49 -26.74 -0.12 -1.95 16 3 C -0.09 -1.70 1.12 -90.62 -0.10 -1.81 16 4 H 0.12 2.80 4.97 -51.93 -0.26 2.55 16 5 C -0.11 -1.80 4.97 -26.73 -0.13 -1.93 16 6 C -0.12 -1.80 5.92 -26.73 -0.16 -1.96 16 7 C -0.11 -1.63 5.92 -26.73 -0.16 -1.79 16 8 C -0.16 -2.70 4.37 -26.73 -0.12 -2.81 16 9 C 0.11 1.95 1.61 -67.71 -0.11 1.85 16 10 H 0.05 0.93 7.65 -51.93 -0.40 0.54 16 11 N -0.52 -9.92 2.99 -228.08 -0.68 -10.61 16 12 C 0.15 3.37 3.32 -4.97 -0.02 3.35 16 13 C -0.50 -13.06 7.64 -34.44 -0.26 -13.32 16 14 H 0.10 2.78 4.57 -52.49 -0.24 2.54 16 15 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 16 N -0.90 -26.34 13.96 55.43 0.77 -25.57 16 17 Si 0.86 21.07 27.49 -169.99 -4.67 16.39 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.27 -6.39 6.51 56.52 0.37 -6.03 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 C 0.06 1.02 3.91 -3.83 -0.01 1.01 16 22 C -0.09 -1.46 2.96 -90.62 -0.27 -1.73 16 23 C -0.13 -2.01 9.09 37.16 0.34 -1.68 16 24 C -0.14 -1.87 9.19 37.16 0.34 -1.53 16 25 H 0.06 1.34 7.96 -51.93 -0.41 0.93 16 26 H 0.04 0.66 6.58 -51.93 -0.34 0.31 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 1.69 6.76 -51.93 -0.35 1.34 16 30 H 0.06 0.93 6.58 -51.93 -0.34 0.59 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.08 1.67 5.97 -51.93 -0.31 1.36 16 37 H 0.05 0.77 7.49 -51.93 -0.39 0.38 16 38 H 0.00 0.05 4.17 -51.93 -0.22 -0.17 16 39 H 0.02 0.41 5.91 -51.93 -0.31 0.10 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 41 H 0.06 0.89 7.62 -51.93 -0.40 0.50 16 42 H 0.02 0.35 7.62 -51.93 -0.40 -0.05 16 43 H 0.07 1.34 6.65 -51.92 -0.35 0.99 16 44 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 1.30 7.80 -51.93 -0.40 0.90 16 46 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 48 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 349.16 15.07 5.26 5.26 Total: -1.00 -26.63 349.16 -9.19 -35.82 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -9.35 Total: 3.50 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: -0.52 Total: -24.80 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.09 Total: -36.17 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.39 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -26.63 -9.19 -35.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104388654.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.588 kcal (2) G-P(sol) polarization free energy of solvation -26.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds