Wall clock time and date at job start Mon Mar 30 2020 07:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47017 * 2 1 4 4 H 1.09001 * 109.47506 * 54.42516 * 3 2 1 5 5 C 1.53002 * 109.47190 * 294.42854 * 3 2 1 6 6 C 1.53001 * 109.47521 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47185 * 59.99637 * 6 5 3 8 8 C 1.53001 * 109.47019 * 300.00220 * 7 6 5 9 9 C 1.52997 * 109.46990 * 59.99965 * 8 7 6 10 10 H 1.09001 * 109.47506 * 60.00010 * 9 8 7 11 11 N 1.46905 * 109.47122 * 179.97438 * 9 8 7 12 12 C 1.46908 * 110.99586 * 46.64390 * 11 9 8 13 13 C 1.50698 * 109.46858 * 76.88933 * 12 11 9 14 14 H 1.08000 * 120.00173 * 0.82132 * 13 12 11 15 15 C 1.37877 * 119.99888 * 180.82026 * 13 12 11 16 16 N 1.31510 * 120.00132 * 179.72510 * 15 13 12 17 17 Si 1.86808 * 119.99812 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.46966 * 269.72243 * 17 15 13 19 19 H 1.48493 * 109.46798 * 29.72363 * 17 15 13 20 20 H 1.48501 * 109.46829 * 149.72610 * 17 15 13 21 21 C 1.46894 * 111.00126 * 282.68873 * 11 9 8 22 22 C 1.53001 * 109.47069 * 199.82442 * 21 11 9 23 23 C 1.52997 * 109.46807 * 66.45095 * 22 21 11 24 24 C 1.52999 * 109.47368 * 186.45211 * 22 21 11 25 25 H 1.09002 * 109.47744 * 299.99890 * 1 2 3 26 26 H 1.08998 * 109.47144 * 60.00559 * 1 2 3 27 27 H 1.09002 * 109.47083 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47744 * 240.00110 * 2 1 3 29 29 H 1.08998 * 109.47144 * 119.99441 * 2 1 3 30 30 H 1.08994 * 109.47281 * 59.99609 * 5 3 2 31 31 H 1.09006 * 109.47065 * 300.00099 * 5 3 2 32 32 H 1.09006 * 109.46552 * 299.99705 * 6 5 3 33 33 H 1.08994 * 109.47070 * 180.02562 * 6 5 3 34 34 H 1.08994 * 109.47002 * 180.02562 * 7 6 5 35 35 H 1.08993 * 109.46852 * 60.00149 * 7 6 5 36 36 H 1.08992 * 109.47151 * 300.00232 * 8 7 6 37 37 H 1.08999 * 109.47124 * 179.97438 * 8 7 6 38 38 H 1.09000 * 109.46861 * 316.89272 * 12 11 9 39 39 H 1.08995 * 109.46900 * 196.88631 * 12 11 9 40 40 H 0.97007 * 119.99822 * 180.27114 * 16 15 13 41 41 H 1.08994 * 109.47642 * 319.82731 * 21 11 9 42 42 H 1.09006 * 109.46935 * 79.82998 * 21 11 9 43 43 H 1.09009 * 109.47188 * 306.45380 * 22 21 11 44 44 H 1.09006 * 109.46668 * 179.97438 * 23 22 21 45 45 H 1.08992 * 109.47434 * 300.00090 * 23 22 21 46 46 H 1.09002 * 109.47200 * 60.00537 * 23 22 21 47 47 H 1.09010 * 109.47021 * 60.00155 * 24 22 21 48 48 H 1.08993 * 109.47385 * 179.97438 * 24 22 21 49 49 H 1.09001 * 109.46889 * 300.00523 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5974 1.9844 0.8358 5 6 1.6475 2.1222 -1.3134 6 6 2.1580 3.5645 -1.3137 7 6 3.6816 3.5663 -1.1739 8 6 4.0740 2.8867 0.1395 9 6 3.5635 1.4444 0.1398 10 1 4.0057 0.9022 -0.6961 11 7 3.9408 0.7916 1.4006 12 6 3.6390 1.6543 2.5508 13 6 2.1591 1.6158 2.8328 14 1 1.5098 1.0008 2.2274 15 6 1.6341 2.3658 3.8638 16 7 0.3420 2.3365 4.1065 17 14 2.7572 3.4302 4.9105 18 1 3.2454 2.6425 6.0709 19 1 3.9141 3.8797 4.0953 20 1 2.0047 4.6142 5.3973 21 6 5.3579 0.4051 1.3898 22 6 5.6006 -0.6727 2.4482 23 6 4.8616 -1.9523 2.0516 24 6 7.1000 -0.9601 2.5490 25 1 -0.3635 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 0.5621 2.1205 -1.4132 31 1 2.0900 1.5803 -2.1493 32 1 1.7157 4.1066 -0.4778 33 1 1.8780 4.0488 -2.2492 34 1 4.0452 4.5938 -1.1737 35 1 4.1237 3.0242 -2.0097 36 1 3.6318 3.4287 0.9753 37 1 5.1594 2.8876 0.2389 38 1 3.9396 2.6776 2.3262 39 1 4.1847 1.2986 3.4247 40 1 -0.0279 2.8673 4.8294 41 1 5.6207 0.0147 0.4067 42 1 5.9739 1.2768 1.6111 43 1 5.2318 -0.3243 3.4130 44 1 5.0349 -2.7204 2.8055 45 1 3.7935 -1.7477 1.9798 46 1 5.2305 -2.3009 1.0870 47 1 7.6265 -0.0484 2.8316 48 1 7.2729 -1.7276 3.3033 49 1 7.4688 -1.3085 1.5843 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104388654.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:45 Heat of formation + Delta-G solvation = -38.942336 kcal Electronic energy + Delta-G solvation = -23070.782942 eV Core-core repulsion = 20224.056785 eV Total energy + Delta-G solvation = -2846.726157 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.78412 -37.75595 -35.32765 -34.73442 -34.13721 -30.46568 -29.86104 -29.26371 -27.84332 -25.56223 -24.68238 -24.02957 -21.78044 -21.47754 -20.40067 -20.14624 -18.74994 -16.88345 -16.36105 -16.19380 -15.84216 -15.36359 -15.08794 -14.92389 -14.70875 -14.47092 -14.31094 -13.94127 -13.70931 -13.60378 -13.28452 -13.17755 -13.01867 -12.78581 -12.47283 -12.42705 -12.24028 -12.12157 -11.95155 -11.87534 -11.78211 -11.62554 -11.61066 -11.42115 -11.33184 -11.17624 -10.87405 -10.73331 -10.52291 -10.46923 -8.68049 -8.12580 -6.07078 1.31389 1.34622 1.41565 2.40494 3.18845 3.31905 3.88484 3.98965 4.06209 4.16079 4.23590 4.34770 4.40939 4.43758 4.57811 4.62027 4.63804 4.71994 4.74986 4.77205 4.80727 4.87560 4.91414 4.96574 5.01465 5.03771 5.05710 5.12304 5.14288 5.18152 5.23335 5.28783 5.33635 5.36751 5.39772 5.46670 5.51125 5.55979 5.59562 5.63220 5.68812 5.76022 5.89764 6.07101 6.26073 6.65698 6.86338 7.03502 7.51675 9.01661 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.010783 B = 0.010203 C = 0.007442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.967012 B = 2743.514836 C = 3761.557020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.089 4.089 4 H 0.073 0.927 5 C -0.108 4.108 6 C -0.117 4.117 7 C -0.103 4.103 8 C -0.151 4.151 9 C 0.109 3.891 10 H 0.077 0.923 11 N -0.524 5.524 12 C 0.161 3.839 13 C -0.487 4.487 14 H 0.082 0.918 15 C 0.012 3.988 16 N -0.946 5.946 17 Si 0.917 3.083 18 H -0.276 1.276 19 H -0.258 1.258 20 H -0.291 1.291 21 C 0.062 3.938 22 C -0.094 4.094 23 C -0.126 4.126 24 C -0.137 4.137 25 H 0.023 0.977 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.036 0.964 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.054 0.946 38 H -0.002 1.002 39 H 0.009 0.991 40 H 0.258 0.742 41 H 0.079 0.921 42 H 0.019 0.981 43 H 0.042 0.958 44 H 0.048 0.952 45 H 0.043 0.957 46 H 0.059 0.941 47 H 0.049 0.951 48 H 0.060 0.940 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.030 -2.864 -11.157 15.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.132 4.132 3 C -0.107 4.107 4 H 0.091 0.909 5 C -0.146 4.146 6 C -0.155 4.155 7 C -0.141 4.141 8 C -0.190 4.190 9 C 0.001 3.999 10 H 0.095 0.905 11 N -0.246 5.246 12 C 0.034 3.966 13 C -0.526 4.526 14 H 0.100 0.900 15 C -0.184 4.184 16 N -0.589 5.589 17 Si 0.743 3.257 18 H -0.202 1.202 19 H -0.182 1.182 20 H -0.217 1.217 21 C -0.066 4.066 22 C -0.113 4.113 23 C -0.183 4.183 24 C -0.194 4.194 25 H 0.042 0.958 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.016 0.984 39 H 0.027 0.973 40 H 0.067 0.933 41 H 0.098 0.902 42 H 0.037 0.963 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.078 0.922 47 H 0.068 0.932 48 H 0.079 0.921 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.641 -3.237 -10.989 14.973 hybrid contribution 0.366 1.521 1.319 2.046 sum 10.007 -1.716 -9.670 14.021 Atomic orbital electron populations 1.21728 0.97155 1.00671 1.00524 1.21247 0.94404 0.96638 1.00907 1.21424 0.94686 0.96497 0.98133 0.90874 1.21592 1.00243 0.95491 0.97252 1.21511 0.95888 0.97016 1.01086 1.21402 0.95821 1.00205 0.96718 1.22194 0.99590 0.98612 0.98584 1.21551 0.95713 0.91621 0.91060 0.90487 1.62022 1.17635 1.42628 1.02327 1.20137 0.95606 0.91118 0.89703 1.21675 0.92766 1.24584 1.13543 0.90041 1.25554 0.95664 0.98488 0.98715 1.70019 1.12851 1.43489 1.32504 0.86172 0.80138 0.79248 0.80102 1.20192 1.18238 1.21711 1.22176 0.88454 0.96447 0.99533 1.21100 0.96232 0.96010 0.97964 1.21585 1.00339 0.95761 1.00658 1.21751 0.93988 1.01324 1.02379 0.95818 0.92056 0.92882 0.92218 0.92905 0.92517 0.91101 0.94531 0.90539 0.91977 0.90609 0.93677 0.92710 0.98444 0.97280 0.93261 0.90218 0.96298 0.93935 0.93267 0.93747 0.92161 0.93173 0.92127 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.12 9.67 71.98 0.70 -4.42 16 2 C -0.09 -3.40 4.49 30.59 0.14 -3.26 16 3 C -0.09 -3.27 1.12 -10.79 -0.01 -3.28 16 4 H 0.07 3.49 4.97 -2.39 -0.01 3.48 16 5 C -0.11 -3.23 4.97 30.60 0.15 -3.08 16 6 C -0.12 -3.36 5.92 30.60 0.18 -3.18 16 7 C -0.10 -2.78 5.92 30.60 0.18 -2.60 16 8 C -0.15 -5.02 4.37 30.59 0.13 -4.89 16 9 C 0.11 3.74 1.61 44.91 0.07 3.81 16 10 H 0.08 2.34 7.65 -2.39 -0.02 2.33 16 11 N -0.52 -19.97 2.99 -875.52 -2.62 -22.59 16 12 C 0.16 7.46 3.32 85.55 0.28 7.74 16 13 C -0.49 -26.50 7.64 25.60 0.20 -26.31 16 14 H 0.08 4.72 4.57 -2.91 -0.01 4.71 16 15 C 0.01 0.68 5.47 84.66 0.46 1.15 16 16 N -0.95 -58.33 13.96 21.45 0.30 -58.03 16 17 Si 0.92 44.82 27.49 68.60 1.89 46.71 16 18 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 19 H -0.26 -11.99 6.51 99.48 0.65 -11.34 16 20 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 21 C 0.06 1.95 3.91 86.30 0.34 2.29 16 22 C -0.09 -2.84 2.96 -10.79 -0.03 -2.87 16 23 C -0.13 -3.65 9.09 71.98 0.65 -3.00 16 24 C -0.14 -3.15 9.19 71.98 0.66 -2.49 16 25 H 0.02 1.01 7.96 -2.39 -0.02 0.99 16 26 H 0.06 1.91 6.58 -2.39 -0.02 1.89 16 27 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 28 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.05 2.21 6.76 -2.39 -0.02 2.20 16 30 H 0.06 1.71 6.58 -2.39 -0.02 1.69 16 31 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.04 1.84 5.97 -2.39 -0.01 1.83 16 37 H 0.05 1.71 7.49 -2.39 -0.02 1.69 16 38 H 0.00 -0.09 4.17 -2.39 -0.01 -0.10 16 39 H 0.01 0.44 5.91 -2.39 -0.01 0.43 16 40 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 41 H 0.08 2.18 7.62 -2.39 -0.02 2.16 16 42 H 0.02 0.61 7.62 -2.38 -0.02 0.59 16 43 H 0.04 1.54 6.65 -2.38 -0.02 1.52 16 44 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 45 H 0.04 1.54 7.80 -2.39 -0.02 1.53 16 46 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.05 1.13 8.14 -2.38 -0.02 1.12 16 48 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -60.86 349.16 4.49 -56.37 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.82 Total: 21.92 kcal Atomic # 6 Polarization: -48.48 SS G_CDS: 4.11 Total: -44.37 kcal Atomic # 7 Polarization: -78.30 SS G_CDS: -2.32 Total: -80.62 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.89 Total: 46.71 kcal Total: -60.86 4.49 -56.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104388654.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.429 kcal (2) G-P(sol) polarization free energy of solvation -60.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds