Wall clock time and date at job start Mon Mar 30 2020 07:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47293 * 2 1 4 4 H 1.09000 * 109.47175 * 298.70979 * 3 2 1 5 5 C 1.52994 * 109.47365 * 58.71087 * 3 2 1 6 6 C 1.53007 * 109.47345 * 59.99763 * 5 3 2 7 7 C 1.53008 * 109.46777 * 59.99926 * 6 5 3 8 8 C 1.52994 * 109.46951 * 300.00383 * 7 6 5 9 9 C 1.52994 * 109.47641 * 59.99997 * 8 7 6 10 10 H 1.09010 * 109.47058 * 59.99431 * 9 8 7 11 11 N 1.46898 * 109.47629 * 179.97438 * 9 8 7 12 12 C 1.46899 * 110.99653 * 31.94604 * 11 9 8 13 13 C 1.50706 * 109.47160 * 194.24665 * 12 11 9 14 14 H 1.07998 * 119.99513 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99981 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99907 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 120.00156 * 0.02562 * 15 13 12 18 18 H 1.48505 * 109.46725 * 89.99888 * 17 15 13 19 19 H 1.48496 * 109.47021 * 209.99917 * 17 15 13 20 20 H 1.48500 * 109.47064 * 330.00294 * 17 15 13 21 21 C 1.46907 * 110.99782 * 155.89428 * 11 9 8 22 22 C 1.52995 * 109.47000 * 74.13922 * 21 11 9 23 23 C 1.53004 * 109.47383 * 62.06470 * 22 21 11 24 24 C 1.52998 * 109.47262 * 182.06582 * 22 21 11 25 25 H 1.08994 * 109.47448 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47163 * 300.00367 * 1 2 3 27 27 H 1.09002 * 109.47113 * 59.99907 * 1 2 3 28 28 H 1.09003 * 109.46757 * 239.99982 * 2 1 3 29 29 H 1.08997 * 109.46417 * 120.00134 * 2 1 3 30 30 H 1.08995 * 109.47288 * 300.00163 * 5 3 2 31 31 H 1.09002 * 109.47874 * 179.97438 * 5 3 2 32 32 H 1.08991 * 109.47594 * 180.02562 * 6 5 3 33 33 H 1.09002 * 109.46576 * 300.00723 * 6 5 3 34 34 H 1.08996 * 109.46664 * 60.00358 * 7 6 5 35 35 H 1.09000 * 109.46967 * 180.02562 * 7 6 5 36 36 H 1.09002 * 109.46823 * 180.02562 * 8 7 6 37 37 H 1.09003 * 109.47755 * 299.99520 * 8 7 6 38 38 H 1.08996 * 109.46950 * 314.24569 * 12 11 9 39 39 H 1.09004 * 109.47343 * 74.24625 * 12 11 9 40 40 H 0.97005 * 119.99870 * 180.02562 * 16 15 13 41 41 H 1.09006 * 109.46792 * 194.13628 * 21 11 9 42 42 H 1.08991 * 109.47223 * 314.13339 * 21 11 9 43 43 H 1.09000 * 109.47208 * 302.06348 * 22 21 11 44 44 H 1.08994 * 109.46815 * 300.00023 * 23 22 21 45 45 H 1.09000 * 109.47049 * 59.99781 * 23 22 21 46 46 H 1.08996 * 109.46653 * 180.02562 * 23 22 21 47 47 H 1.09004 * 109.47083 * 59.99653 * 24 22 21 48 48 H 1.09003 * 109.47530 * 179.97438 * 24 22 21 49 49 H 1.09000 * 109.46818 * 300.00005 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6957 1.9495 -0.9013 5 6 1.5038 2.1730 1.2326 6 6 1.9870 1.4612 2.4979 7 6 3.5168 1.4612 2.5303 8 6 4.0530 0.7306 1.2976 9 6 3.5697 1.4424 0.0325 10 1 3.9331 2.4701 0.0325 11 7 4.0850 0.7413 -1.1511 12 6 4.2117 -0.6998 -0.8956 13 6 5.0540 -1.3292 -1.9752 14 1 5.4554 -0.7196 -2.7712 15 6 5.3130 -2.6831 -1.9461 16 7 6.0484 -3.2323 -2.8879 17 14 4.6192 -3.7374 -0.5689 18 1 3.2842 -4.2533 -0.9650 19 1 5.5339 -4.8782 -0.3100 20 1 4.4879 -2.9187 0.6631 21 6 3.2378 0.9955 -2.3240 22 6 3.4818 2.4184 -2.8306 23 6 4.9409 2.5606 -3.2686 24 6 2.5623 2.7010 -4.0203 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 0.4141 2.1730 1.2096 31 1 1.8675 3.2006 1.2329 32 1 1.6047 1.9813 3.3760 33 1 1.6237 0.4335 2.4978 34 1 3.8801 2.4888 2.5303 35 1 3.8611 0.9537 3.4314 36 1 5.1427 0.7303 1.3210 37 1 3.6897 -0.2971 1.2976 38 1 4.6860 -0.8567 0.0731 39 1 3.2221 -1.1569 -0.8940 40 1 6.2303 -4.1849 -2.8676 41 1 3.4834 0.2825 -3.1110 42 1 2.1898 0.8834 -2.0463 43 1 3.2713 3.1296 -2.0318 44 1 5.5959 2.3594 -2.4211 45 1 5.1514 1.8495 -4.0674 46 1 5.1147 3.5745 -3.6291 47 1 1.5228 2.5996 -3.7082 48 1 2.7358 3.7149 -4.3810 49 1 2.7728 1.9898 -4.8190 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104388658.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:48 Heat of formation + Delta-G solvation = -9.092847 kcal Electronic energy + Delta-G solvation = -23199.517219 eV Core-core repulsion = 20354.085433 eV Total energy + Delta-G solvation = -2845.431786 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.26527 -36.31719 -33.97980 -33.10972 -32.27187 -29.36577 -29.06298 -27.21265 -26.58938 -24.80168 -23.50504 -22.42394 -21.36366 -19.92945 -19.08732 -17.88331 -16.97261 -15.89610 -15.13546 -14.89526 -14.48446 -14.04361 -13.77090 -13.73346 -13.44558 -13.27496 -12.82799 -12.72191 -12.34854 -12.21534 -11.96404 -11.74089 -11.67686 -11.40313 -11.28001 -11.05015 -10.90754 -10.87478 -10.72180 -10.59421 -10.44198 -10.24061 -10.14424 -10.02383 -9.80642 -9.77214 -9.66586 -9.37104 -9.05650 -8.49656 -7.05752 -5.99620 -3.94073 3.29206 3.37617 3.38415 4.45616 4.72385 4.88513 4.99847 5.14223 5.32890 5.34376 5.39997 5.40077 5.46500 5.49680 5.56221 5.67748 5.69683 5.79459 5.83816 5.89606 5.92682 5.98584 6.02091 6.13622 6.14589 6.18686 6.19560 6.27746 6.32537 6.36824 6.38381 6.41559 6.45691 6.52735 6.58861 6.63664 6.70539 6.78368 6.84061 6.93103 7.04929 7.10858 7.12970 7.73437 8.06053 8.21377 8.76358 9.12211 9.63647 11.14013 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.013278 B = 0.009076 C = 0.006730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.233890 B = 3084.342917 C = 4159.297946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.141 4.141 3 C -0.116 4.116 4 H 0.075 0.925 5 C -0.110 4.110 6 C -0.120 4.120 7 C -0.117 4.117 8 C -0.124 4.124 9 C 0.091 3.909 10 H 0.068 0.932 11 N -0.515 5.515 12 C 0.141 3.859 13 C -0.501 4.501 14 H 0.080 0.920 15 C 0.067 3.933 16 N -0.903 5.903 17 Si 0.869 3.131 18 H -0.279 1.279 19 H -0.288 1.288 20 H -0.267 1.267 21 C 0.052 3.948 22 C -0.088 4.088 23 C -0.132 4.132 24 C -0.145 4.145 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.038 0.962 39 H -0.002 1.002 40 H 0.261 0.739 41 H 0.083 0.917 42 H 0.038 0.962 43 H 0.057 0.943 44 H 0.069 0.931 45 H 0.051 0.949 46 H 0.032 0.968 47 H 0.046 0.954 48 H 0.047 0.953 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.701 10.978 7.006 16.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C -0.135 4.135 4 H 0.093 0.907 5 C -0.148 4.148 6 C -0.157 4.157 7 C -0.155 4.155 8 C -0.161 4.161 9 C -0.018 4.018 10 H 0.086 0.914 11 N -0.237 5.237 12 C 0.016 3.984 13 C -0.540 4.540 14 H 0.098 0.902 15 C -0.134 4.134 16 N -0.543 5.543 17 Si 0.696 3.304 18 H -0.205 1.205 19 H -0.214 1.214 20 H -0.191 1.191 21 C -0.076 4.076 22 C -0.107 4.107 23 C -0.190 4.190 24 C -0.203 4.203 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.056 0.944 39 H 0.015 0.985 40 H 0.071 0.929 41 H 0.101 0.899 42 H 0.056 0.944 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.052 0.948 47 H 0.065 0.935 48 H 0.067 0.933 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.129 10.969 6.839 15.825 hybrid contribution -1.117 -1.057 0.853 1.759 sum -10.246 9.912 7.692 16.199 Atomic orbital electron populations 1.21824 0.96774 1.00980 1.01170 1.22155 0.95070 0.96977 1.03541 1.21830 0.97713 0.96129 0.97873 0.90666 1.21544 0.99795 0.98763 0.94729 1.21562 0.96116 1.00847 0.97221 1.21530 0.95304 1.00495 0.98143 1.21901 1.01037 0.99846 0.93340 1.21710 0.90935 0.98215 0.90916 0.91378 1.62228 1.47726 1.12089 1.01631 1.20676 0.95642 0.83808 0.98307 1.21129 1.30349 0.92858 1.09661 0.90243 1.24881 0.95141 0.97809 0.95573 1.69897 1.39126 1.11716 1.33578 0.86961 0.79107 0.80618 0.83667 1.20477 1.21366 1.19133 1.22336 0.94861 0.96018 0.94427 1.21058 0.95799 0.97394 0.96486 1.21652 0.96198 0.99086 1.02034 1.21819 0.98972 1.00800 0.98719 0.93334 0.92958 0.93206 0.89701 0.91729 0.92361 0.92524 0.92877 0.91929 0.92367 0.92528 0.91299 0.90998 0.94448 0.98486 0.92873 0.89907 0.94400 0.92409 0.91221 0.93012 0.94841 0.93501 0.93350 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.53 37.16 0.35 -1.60 16 2 C -0.14 -2.18 3.15 -26.73 -0.08 -2.26 16 3 C -0.12 -1.66 1.67 -90.63 -0.15 -1.81 16 4 H 0.08 1.10 5.68 -51.93 -0.29 0.80 16 5 C -0.11 -1.34 5.07 -26.73 -0.14 -1.48 16 6 C -0.12 -1.44 5.65 -26.72 -0.15 -1.60 16 7 C -0.12 -1.51 5.92 -26.73 -0.16 -1.67 16 8 C -0.12 -2.00 3.66 -26.74 -0.10 -2.10 16 9 C 0.09 1.49 2.06 -67.72 -0.14 1.35 16 10 H 0.07 1.10 7.82 -51.92 -0.41 0.69 16 11 N -0.51 -10.09 3.90 -228.08 -0.89 -10.98 16 12 C 0.14 3.25 2.43 -4.97 -0.01 3.24 16 13 C -0.50 -13.91 8.87 -34.44 -0.31 -14.22 16 14 H 0.08 2.42 7.82 -52.49 -0.41 2.01 16 15 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 16 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 17 Si 0.87 21.41 27.47 -169.99 -4.67 16.74 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 21 C 0.05 0.94 3.31 -3.82 -0.01 0.93 16 22 C -0.09 -1.38 2.67 -90.62 -0.24 -1.62 16 23 C -0.13 -2.19 9.06 37.16 0.34 -1.86 16 24 C -0.15 -1.97 9.19 37.16 0.34 -1.63 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.61 6.40 -51.93 -0.33 0.28 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 1.55 3.89 -51.93 -0.20 1.35 16 29 H 0.06 1.05 4.81 -51.93 -0.25 0.80 16 30 H 0.06 0.66 6.40 -51.93 -0.33 0.33 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.80 6.46 -51.93 -0.34 0.46 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 1.19 7.98 -51.93 -0.41 0.78 16 37 H 0.07 1.29 4.63 -51.93 -0.24 1.05 16 38 H 0.04 0.89 4.37 -51.93 -0.23 0.66 16 39 H 0.00 -0.05 4.21 -51.93 -0.22 -0.27 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.08 1.78 6.92 -51.93 -0.36 1.42 16 42 H 0.04 0.66 4.09 -51.93 -0.21 0.44 16 43 H 0.06 0.87 7.08 -51.93 -0.37 0.50 16 44 H 0.07 1.28 7.66 -51.93 -0.40 0.88 16 45 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 337.89 15.07 5.09 5.09 Total: -1.00 -28.49 337.89 -9.07 -37.56 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -8.82 Total: 2.97 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: -0.56 Total: -24.50 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: -0.12 Total: -37.86 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.49 -9.07 -37.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104388658.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.469 kcal (2) G-P(sol) polarization free energy of solvation -28.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds