Wall clock time and date at job start Mon Mar 30 2020 07:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47293 * 2 1 4 4 H 1.09000 * 109.47175 * 298.70979 * 3 2 1 5 5 C 1.52994 * 109.47365 * 58.71087 * 3 2 1 6 6 C 1.53007 * 109.47345 * 59.99763 * 5 3 2 7 7 C 1.53008 * 109.46777 * 59.99926 * 6 5 3 8 8 C 1.52994 * 109.46951 * 300.00383 * 7 6 5 9 9 C 1.52994 * 109.47641 * 59.99997 * 8 7 6 10 10 H 1.09010 * 109.47058 * 59.99431 * 9 8 7 11 11 N 1.46898 * 109.47629 * 179.97438 * 9 8 7 12 12 C 1.46899 * 110.99653 * 31.94604 * 11 9 8 13 13 C 1.50706 * 109.47160 * 194.24665 * 12 11 9 14 14 H 1.07998 * 119.99513 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99981 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99907 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 120.00156 * 0.02562 * 15 13 12 18 18 H 1.48505 * 109.46725 * 89.99888 * 17 15 13 19 19 H 1.48496 * 109.47021 * 209.99917 * 17 15 13 20 20 H 1.48500 * 109.47064 * 330.00294 * 17 15 13 21 21 C 1.46907 * 110.99782 * 155.89428 * 11 9 8 22 22 C 1.52995 * 109.47000 * 74.13922 * 21 11 9 23 23 C 1.53004 * 109.47383 * 62.06470 * 22 21 11 24 24 C 1.52998 * 109.47262 * 182.06582 * 22 21 11 25 25 H 1.08994 * 109.47448 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47163 * 300.00367 * 1 2 3 27 27 H 1.09002 * 109.47113 * 59.99907 * 1 2 3 28 28 H 1.09003 * 109.46757 * 239.99982 * 2 1 3 29 29 H 1.08997 * 109.46417 * 120.00134 * 2 1 3 30 30 H 1.08995 * 109.47288 * 300.00163 * 5 3 2 31 31 H 1.09002 * 109.47874 * 179.97438 * 5 3 2 32 32 H 1.08991 * 109.47594 * 180.02562 * 6 5 3 33 33 H 1.09002 * 109.46576 * 300.00723 * 6 5 3 34 34 H 1.08996 * 109.46664 * 60.00358 * 7 6 5 35 35 H 1.09000 * 109.46967 * 180.02562 * 7 6 5 36 36 H 1.09002 * 109.46823 * 180.02562 * 8 7 6 37 37 H 1.09003 * 109.47755 * 299.99520 * 8 7 6 38 38 H 1.08996 * 109.46950 * 314.24569 * 12 11 9 39 39 H 1.09004 * 109.47343 * 74.24625 * 12 11 9 40 40 H 0.97005 * 119.99870 * 180.02562 * 16 15 13 41 41 H 1.09006 * 109.46792 * 194.13628 * 21 11 9 42 42 H 1.08991 * 109.47223 * 314.13339 * 21 11 9 43 43 H 1.09000 * 109.47208 * 302.06348 * 22 21 11 44 44 H 1.08994 * 109.46815 * 300.00023 * 23 22 21 45 45 H 1.09000 * 109.47049 * 59.99781 * 23 22 21 46 46 H 1.08996 * 109.46653 * 180.02562 * 23 22 21 47 47 H 1.09004 * 109.47083 * 59.99653 * 24 22 21 48 48 H 1.09003 * 109.47530 * 179.97438 * 24 22 21 49 49 H 1.09000 * 109.46818 * 300.00005 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6957 1.9495 -0.9013 5 6 1.5038 2.1730 1.2326 6 6 1.9870 1.4612 2.4979 7 6 3.5168 1.4612 2.5303 8 6 4.0530 0.7306 1.2976 9 6 3.5697 1.4424 0.0325 10 1 3.9331 2.4701 0.0325 11 7 4.0850 0.7413 -1.1511 12 6 4.2117 -0.6998 -0.8956 13 6 5.0540 -1.3292 -1.9752 14 1 5.4554 -0.7196 -2.7712 15 6 5.3130 -2.6831 -1.9461 16 7 6.0484 -3.2323 -2.8879 17 14 4.6192 -3.7374 -0.5689 18 1 3.2842 -4.2533 -0.9650 19 1 5.5339 -4.8782 -0.3100 20 1 4.4879 -2.9187 0.6631 21 6 3.2378 0.9955 -2.3240 22 6 3.4818 2.4184 -2.8306 23 6 4.9409 2.5606 -3.2686 24 6 2.5623 2.7010 -4.0203 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 0.4141 2.1730 1.2096 31 1 1.8675 3.2006 1.2329 32 1 1.6047 1.9813 3.3760 33 1 1.6237 0.4335 2.4978 34 1 3.8801 2.4888 2.5303 35 1 3.8611 0.9537 3.4314 36 1 5.1427 0.7303 1.3210 37 1 3.6897 -0.2971 1.2976 38 1 4.6860 -0.8567 0.0731 39 1 3.2221 -1.1569 -0.8940 40 1 6.2303 -4.1849 -2.8676 41 1 3.4834 0.2825 -3.1110 42 1 2.1898 0.8834 -2.0463 43 1 3.2713 3.1296 -2.0318 44 1 5.5959 2.3594 -2.4211 45 1 5.1514 1.8495 -4.0674 46 1 5.1147 3.5745 -3.6291 47 1 1.5228 2.5996 -3.7082 48 1 2.7358 3.7149 -4.3810 49 1 2.7728 1.9898 -4.8190 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104388658.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:47 Heat of formation + Delta-G solvation = -24.872352 kcal Electronic energy + Delta-G solvation = -23200.201470 eV Core-core repulsion = 20354.085433 eV Total energy + Delta-G solvation = -2846.116037 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.56955 -37.61601 -35.54397 -34.27821 -34.23682 -30.66706 -30.49563 -28.73458 -27.88383 -26.26301 -24.85094 -23.88080 -22.50404 -21.44546 -20.44371 -19.09330 -18.97552 -17.26172 -16.62332 -16.46656 -15.90951 -15.45992 -15.18765 -15.00284 -14.92476 -14.45035 -14.33095 -13.99533 -13.88822 -13.38459 -13.31302 -13.18720 -12.91560 -12.80406 -12.58261 -12.47221 -12.37545 -12.31198 -12.03236 -11.91719 -11.81352 -11.76142 -11.54586 -11.46618 -11.28197 -11.13913 -10.96479 -10.93193 -10.71835 -10.59193 -8.61129 -8.24683 -6.23414 1.30594 1.32511 1.42781 2.34411 3.09246 3.33407 3.75991 3.88304 3.99293 4.09011 4.20574 4.26608 4.30136 4.36222 4.40715 4.45949 4.58789 4.64128 4.72886 4.74209 4.75725 4.84621 4.88781 4.89620 4.94396 4.95424 5.03193 5.11112 5.14608 5.15620 5.19857 5.21239 5.23406 5.29420 5.32264 5.33562 5.39967 5.48590 5.53206 5.54368 5.62322 5.65405 5.67367 5.73217 6.12975 6.58726 6.82097 6.86485 7.38552 8.92739 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.013278 B = 0.009076 C = 0.006730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.233890 B = 3084.342917 C = 4159.297946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C -0.109 4.109 4 H 0.077 0.923 5 C -0.105 4.105 6 C -0.118 4.118 7 C -0.110 4.110 8 C -0.123 4.123 9 C 0.091 3.909 10 H 0.077 0.923 11 N -0.531 5.531 12 C 0.158 3.842 13 C -0.503 4.503 14 H 0.033 0.967 15 C 0.005 3.995 16 N -0.953 5.953 17 Si 0.937 3.063 18 H -0.270 1.270 19 H -0.285 1.285 20 H -0.248 1.248 21 C 0.059 3.941 22 C -0.082 4.082 23 C -0.127 4.127 24 C -0.140 4.140 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.035 0.965 39 H 0.002 0.998 40 H 0.263 0.737 41 H 0.037 0.963 42 H 0.052 0.948 43 H 0.075 0.925 44 H 0.045 0.955 45 H 0.025 0.975 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.070 0.930 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.294 12.924 9.428 20.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.177 4.177 3 C -0.128 4.128 4 H 0.095 0.905 5 C -0.142 4.142 6 C -0.155 4.155 7 C -0.148 4.148 8 C -0.161 4.161 9 C -0.017 4.017 10 H 0.094 0.906 11 N -0.253 5.253 12 C 0.031 3.969 13 C -0.541 4.541 14 H 0.052 0.948 15 C -0.191 4.191 16 N -0.595 5.595 17 Si 0.761 3.239 18 H -0.195 1.195 19 H -0.211 1.211 20 H -0.171 1.171 21 C -0.069 4.069 22 C -0.100 4.100 23 C -0.185 4.185 24 C -0.198 4.198 25 H 0.065 0.935 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.053 0.947 39 H 0.020 0.980 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.094 0.906 44 H 0.064 0.936 45 H 0.044 0.956 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.089 0.911 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.735 12.943 9.269 19.778 hybrid contribution -0.239 -1.599 0.021 1.617 sum -11.973 11.344 9.290 18.931 Atomic orbital electron populations 1.21777 0.94562 1.01395 1.02421 1.22060 0.97013 0.97224 1.01353 1.21739 0.95755 0.95817 0.99534 0.90522 1.21524 1.00739 0.98876 0.93102 1.21562 0.95002 1.00781 0.98189 1.21490 0.96251 1.00663 0.96428 1.21846 0.99849 0.99322 0.95078 1.21789 0.92733 0.97867 0.89345 0.90551 1.62120 1.49433 1.10115 1.03634 1.20374 0.94610 0.85951 0.95948 1.21416 1.30252 0.92828 1.09648 0.94849 1.25769 0.95619 0.99358 0.98319 1.70064 1.41231 1.12172 1.36042 0.85860 0.78490 0.78665 0.80863 1.19491 1.21082 1.17135 1.22259 0.95236 0.96715 0.92709 1.21026 0.95473 0.95679 0.97869 1.21590 0.96724 0.99935 1.00246 1.21775 0.99138 1.01669 0.97224 0.93467 0.90935 0.92623 0.93224 0.92522 0.90670 0.91269 0.90456 0.92712 0.91141 0.91750 0.93329 0.92991 0.94731 0.98024 0.92812 0.94466 0.93043 0.90648 0.93564 0.95613 0.92023 0.92030 0.91139 0.94051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 9.53 71.98 0.69 -2.66 16 2 C -0.14 -4.08 3.15 30.59 0.10 -3.99 16 3 C -0.11 -2.84 1.67 -10.80 -0.02 -2.86 16 4 H 0.08 2.00 5.68 -2.39 -0.01 1.99 16 5 C -0.10 -2.08 5.07 30.59 0.15 -1.93 16 6 C -0.12 -2.36 5.65 30.60 0.17 -2.19 16 7 C -0.11 -2.54 5.92 30.60 0.18 -2.35 16 8 C -0.12 -3.86 3.66 30.59 0.11 -3.75 16 9 C 0.09 2.86 2.06 44.91 0.09 2.95 16 10 H 0.08 2.30 7.82 -2.38 -0.02 2.28 16 11 N -0.53 -21.28 3.90 -875.51 -3.42 -24.70 16 12 C 0.16 7.48 2.43 85.56 0.21 7.68 16 13 C -0.50 -29.50 8.87 25.60 0.23 -29.28 16 14 H 0.03 2.21 7.82 -2.91 -0.02 2.18 16 15 C 0.01 0.32 5.47 84.65 0.46 0.79 16 16 N -0.95 -61.15 13.96 21.45 0.30 -60.85 16 17 Si 0.94 45.17 27.47 68.60 1.88 47.06 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 20 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 21 C 0.06 2.19 3.31 86.30 0.29 2.48 16 22 C -0.08 -2.49 2.67 -10.79 -0.03 -2.51 16 23 C -0.13 -4.30 9.06 71.98 0.65 -3.65 16 24 C -0.14 -3.57 9.19 71.98 0.66 -2.91 16 25 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.07 1.39 6.40 -2.39 -0.02 1.38 16 27 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.05 1.80 3.89 -2.39 -0.01 1.80 16 29 H 0.06 1.75 4.81 -2.39 -0.01 1.73 16 30 H 0.07 1.30 6.40 -2.39 -0.02 1.29 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.05 1.20 6.46 -2.39 -0.02 1.19 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.05 1.68 7.98 -2.39 -0.02 1.66 16 37 H 0.05 1.83 4.63 -2.39 -0.01 1.82 16 38 H 0.03 1.67 4.37 -2.39 -0.01 1.66 16 39 H 0.00 0.11 4.21 -2.39 -0.01 0.10 16 40 H 0.26 15.81 8.31 -92.70 -0.77 15.04 16 41 H 0.04 1.71 6.92 -2.38 -0.02 1.69 16 42 H 0.05 1.77 4.09 -2.39 -0.01 1.76 16 43 H 0.08 2.07 7.08 -2.39 -0.02 2.05 16 44 H 0.05 1.75 7.66 -2.39 -0.02 1.73 16 45 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.04 1.15 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -65.83 337.89 3.56 -62.27 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.85 Total: 20.40 kcal Atomic # 6 Polarization: -48.12 SS G_CDS: 3.95 Total: -44.18 kcal Atomic # 7 Polarization: -82.43 SS G_CDS: -3.12 Total: -85.55 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.88 Total: 47.06 kcal Total: -65.83 3.56 -62.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104388658.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.397 kcal (2) G-P(sol) polarization free energy of solvation -65.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds