Wall clock time and date at job start Mon Mar 30 2020 06:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.46927 * 2 1 4 4 C 1.53000 * 109.46927 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47182 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.46899 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.46965 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47330 * 180.02562 * 7 6 5 9 9 N 1.46500 * 109.47505 * 180.02562 * 8 7 6 10 10 C 1.36940 * 119.99901 * 270.00651 * 9 8 7 11 11 H 1.07997 * 119.99926 * 141.59911 * 10 9 8 12 12 C 1.38811 * 119.99795 * 321.59297 * 10 9 8 13 13 N 1.31620 * 120.00399 * 339.27141 * 12 10 9 14 14 Si 1.86796 * 119.99867 * 159.27244 * 12 10 9 15 15 H 1.48500 * 109.47354 * 90.00136 * 14 12 10 16 16 H 1.48507 * 109.47258 * 209.99841 * 14 12 10 17 17 H 1.48501 * 109.47509 * 329.99935 * 14 12 10 18 18 C 1.46494 * 119.99962 * 89.99979 * 9 8 7 19 19 C 1.54266 * 110.03413 * 242.55395 * 18 9 8 20 20 C 1.54965 * 104.16115 * 217.13889 * 19 18 9 21 21 C 1.54890 * 102.77673 * 37.88375 * 20 19 18 22 22 C 1.53876 * 110.03210 * 125.33470 * 18 9 8 23 23 H 1.09000 * 109.47549 * 300.00523 * 1 2 3 24 24 H 1.09007 * 109.47149 * 60.00465 * 1 2 3 25 25 H 1.08997 * 109.47487 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47042 * 239.99528 * 2 1 3 27 27 H 1.09002 * 109.46678 * 119.99551 * 2 1 3 28 28 H 1.08997 * 109.47645 * 59.99897 * 3 2 1 29 29 H 1.08996 * 109.47292 * 299.99664 * 3 2 1 30 30 H 1.09000 * 109.47549 * 59.99477 * 4 3 2 31 31 H 1.09007 * 109.47149 * 299.99535 * 4 3 2 32 32 H 1.08995 * 109.47012 * 60.00027 * 5 4 3 33 33 H 1.08996 * 109.47195 * 299.99760 * 5 4 3 34 34 H 1.09007 * 109.47276 * 60.00531 * 6 5 4 35 35 H 1.09000 * 109.47856 * 300.00098 * 6 5 4 36 36 H 1.09004 * 109.46587 * 60.00855 * 7 6 5 37 37 H 1.08996 * 109.47477 * 300.00444 * 7 6 5 38 38 H 1.09009 * 109.47081 * 60.00231 * 8 7 6 39 39 H 1.09006 * 109.47455 * 300.00963 * 8 7 6 40 40 H 0.96994 * 120.00671 * 175.03756 * 13 12 10 41 41 H 1.09003 * 110.02021 * 3.94108 * 18 9 8 42 42 H 1.09001 * 110.48191 * 335.78161 * 19 18 9 43 43 H 1.08993 * 110.49048 * 98.42833 * 19 18 9 44 44 H 1.08996 * 110.71728 * 279.57278 * 20 19 18 45 45 H 1.08991 * 110.92807 * 156.29442 * 20 19 18 46 46 H 1.09004 * 110.48690 * 203.41106 * 21 20 19 47 47 H 1.08996 * 110.60249 * 80.82182 * 21 20 19 48 48 H 1.09003 * 110.03137 * 238.57044 * 22 18 9 49 49 H 1.08994 * 110.03073 * 359.97438 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5699 1.4424 -0.0006 5 6 4.0800 2.8850 -0.0013 6 6 5.6099 2.8849 -0.0013 7 6 6.1200 4.3274 -0.0026 8 6 7.6500 4.3274 -0.0032 9 7 8.1384 5.7086 -0.0038 10 6 8.3660 6.3538 -1.1901 11 1 8.1199 7.4005 -1.2914 12 6 8.9133 5.6625 -2.2622 13 7 9.5812 4.5476 -2.0546 14 14 8.7017 6.3147 -3.9998 15 1 9.8305 7.2217 -4.3290 16 1 8.6845 5.1787 -4.9563 17 1 7.4220 7.0620 -4.0958 18 6 8.3831 6.3996 1.2645 19 6 7.4515 7.6229 1.3882 20 6 8.3258 8.6964 2.0845 21 6 9.7190 8.4698 1.4469 22 6 9.8243 6.9375 1.3022 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6766 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.9330 0.9287 -0.8908 31 1 3.9337 0.9285 0.8892 32 1 3.7170 3.3990 0.8887 33 1 3.7163 3.3985 -0.8913 34 1 5.9733 2.3707 -0.8911 35 1 5.9734 2.3715 0.8889 36 1 5.7567 4.8419 0.8871 37 1 5.7566 4.8405 -0.8929 38 1 8.0130 3.8129 -0.8931 39 1 8.0138 3.8141 0.8869 40 1 9.9016 4.0267 -2.8074 41 1 8.2170 5.7180 2.0988 42 1 7.1398 7.9663 0.4018 43 1 6.5832 7.3809 2.0010 44 1 8.3612 8.5262 3.1606 45 1 7.9592 9.6991 1.8655 46 1 10.5044 8.8458 2.1025 47 1 9.7764 8.9500 0.4701 48 1 10.3574 6.5177 2.1552 49 1 10.3417 6.6841 0.3770 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113370068.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:25 Heat of formation + Delta-G solvation = -38.725672 kcal Electronic energy + Delta-G solvation = -20908.390242 eV Core-core repulsion = 18061.673480 eV Total energy + Delta-G solvation = -2846.716762 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -37.73417 -36.68306 -34.95036 -33.54214 -31.31655 -30.23730 -27.77298 -27.38849 -26.24193 -24.38359 -22.48830 -21.11168 -20.65220 -20.14737 -19.75457 -18.94916 -16.15609 -15.96372 -15.29977 -14.84827 -14.57651 -14.19829 -14.05796 -13.47269 -13.40479 -13.27544 -12.82291 -12.51570 -12.36793 -12.05368 -11.89242 -11.57524 -11.22271 -11.11033 -10.95165 -10.89698 -10.76740 -10.66511 -10.51298 -10.44311 -10.34983 -10.24595 -10.14205 -10.11230 -10.03687 -9.89521 -9.53649 -9.39824 -9.31709 -8.35863 -6.45640 -5.65527 -3.29532 3.39304 3.47468 3.50644 4.54709 4.69414 4.83720 5.00318 5.20271 5.27202 5.37390 5.44413 5.45955 5.49998 5.53973 5.57791 5.67026 5.75445 5.83855 5.85278 5.89035 5.97847 6.09659 6.12398 6.18637 6.22290 6.29683 6.32192 6.35269 6.39499 6.48538 6.52586 6.58716 6.62778 6.65740 6.68894 6.75173 6.90713 6.97874 6.99839 7.09332 7.23388 7.37476 7.48394 7.82358 7.91932 8.62751 9.30662 9.93510 10.52461 11.29238 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.016135 B = 0.004042 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.916608 B = 6925.756452 C = 8069.780504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.117 4.117 6 C -0.115 4.115 7 C -0.132 4.132 8 C 0.147 3.853 9 N -0.580 5.580 10 C -0.243 4.243 11 H 0.058 0.942 12 C 0.011 3.989 13 N -0.886 5.886 14 Si 0.887 3.113 15 H -0.287 1.287 16 H -0.290 1.290 17 H -0.279 1.279 18 C 0.171 3.829 19 C -0.135 4.135 20 C -0.123 4.123 21 C -0.117 4.117 22 C -0.131 4.131 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.039 0.961 37 H 0.056 0.944 38 H 0.091 0.909 39 H 0.018 0.982 40 H 0.251 0.749 41 H 0.045 0.955 42 H 0.072 0.928 43 H 0.044 0.956 44 H 0.053 0.947 45 H 0.051 0.949 46 H 0.046 0.954 47 H 0.061 0.939 48 H 0.039 0.961 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.769 -3.746 6.180 12.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.158 4.158 5 C -0.155 4.155 6 C -0.154 4.154 7 C -0.172 4.172 8 C 0.021 3.979 9 N -0.299 5.299 10 C -0.373 4.373 11 H 0.075 0.925 12 C -0.189 4.189 13 N -0.529 5.529 14 Si 0.717 3.283 15 H -0.214 1.214 16 H -0.217 1.217 17 H -0.205 1.205 18 C 0.063 3.937 19 C -0.174 4.174 20 C -0.161 4.161 21 C -0.155 4.155 22 C -0.171 4.171 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.108 0.892 39 H 0.036 0.964 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.091 0.909 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.065 0.935 47 H 0.079 0.921 48 H 0.057 0.943 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.608 -3.848 6.063 12.810 hybrid contribution -0.132 0.283 -0.955 1.004 sum -10.740 -3.565 5.108 12.415 Atomic orbital electron populations 1.21785 0.96205 1.01299 1.01723 1.21551 0.95549 0.97367 1.01889 1.21640 0.96049 0.96260 1.01870 1.21635 0.94665 0.97678 1.01800 1.21609 0.96646 0.95702 1.01536 1.21544 0.93935 0.98652 1.01219 1.22173 1.00470 0.93995 1.00574 1.20919 0.89214 0.86679 1.01066 1.43947 1.74165 1.11341 1.00411 1.18869 1.33989 0.95554 0.88886 0.92451 1.25118 0.96413 0.98437 0.98901 1.70071 1.36002 1.17001 1.29823 0.86561 0.78087 0.78103 0.85567 1.21415 1.21653 1.20484 1.21026 0.91672 0.92130 0.88842 1.22858 0.97592 0.96805 1.00158 1.22439 0.96565 0.98331 0.98757 1.22250 0.95800 0.97735 0.99725 1.22553 0.99204 0.93656 1.01643 0.92868 0.92829 0.93030 0.92138 0.92191 0.92239 0.92172 0.92192 0.92316 0.92606 0.92367 0.92425 0.92984 0.94201 0.92569 0.89173 0.96356 0.93867 0.93683 0.90924 0.93671 0.92781 0.93030 0.93531 0.92051 0.94261 0.89651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.13 -1.16 5.93 -26.73 -0.16 -1.32 16 3 C -0.12 -1.25 5.21 -26.73 -0.14 -1.39 16 4 C -0.12 -1.43 5.21 -26.73 -0.14 -1.57 16 5 C -0.12 -1.63 5.21 -26.73 -0.14 -1.77 16 6 C -0.12 -1.90 5.21 -26.73 -0.14 -2.04 16 7 C -0.13 -2.61 5.54 -26.73 -0.15 -2.76 16 8 C 0.15 3.42 5.28 -4.04 -0.02 3.40 16 9 N -0.58 -14.07 2.38 -164.39 -0.39 -14.47 16 10 C -0.24 -6.44 7.75 -15.06 -0.12 -6.56 16 11 H 0.06 1.55 6.94 -52.49 -0.36 1.18 16 12 C 0.01 0.30 4.96 -17.43 -0.09 0.21 16 13 N -0.89 -25.18 11.48 55.49 0.64 -24.55 16 14 Si 0.89 21.50 29.60 -169.99 -5.03 16.47 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 C 0.17 3.63 3.42 -66.81 -0.23 3.40 16 19 C -0.13 -2.55 6.43 -25.03 -0.16 -2.71 16 20 C -0.12 -2.02 6.91 -24.70 -0.17 -2.19 16 21 C -0.12 -2.08 6.83 -25.07 -0.17 -2.25 16 22 C -0.13 -2.71 6.24 -25.61 -0.16 -2.87 16 23 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.09 2.37 5.55 -51.92 -0.29 2.08 16 39 H 0.02 0.41 7.90 -51.93 -0.41 0.00 16 40 H 0.25 6.95 8.32 -40.82 -0.34 6.61 16 41 H 0.04 0.93 7.81 -51.93 -0.41 0.52 16 42 H 0.07 1.53 6.64 -51.93 -0.34 1.18 16 43 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 48 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 49 H 0.08 2.09 7.17 -51.93 -0.37 1.72 16 LS Contribution 376.17 15.07 5.67 5.67 Total: -1.00 -27.08 376.17 -10.93 -38.01 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -10.20 Total: 0.17 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: -1.61 Total: -21.30 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.25 Total: -39.01 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -27.08 -10.93 -38.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113370068.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.719 kcal (2) G-P(sol) polarization free energy of solvation -27.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds