Wall clock time and date at job start Mon Mar 30 2020 06:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.46927 * 2 1 4 4 C 1.53000 * 109.46927 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47182 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.46899 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.46965 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47330 * 180.02562 * 7 6 5 9 9 N 1.46500 * 109.47505 * 180.02562 * 8 7 6 10 10 C 1.36940 * 119.99901 * 270.00651 * 9 8 7 11 11 H 1.07997 * 119.99926 * 141.59911 * 10 9 8 12 12 C 1.38811 * 119.99795 * 321.59297 * 10 9 8 13 13 N 1.31620 * 120.00399 * 339.27141 * 12 10 9 14 14 Si 1.86796 * 119.99867 * 159.27244 * 12 10 9 15 15 H 1.48500 * 109.47354 * 90.00136 * 14 12 10 16 16 H 1.48507 * 109.47258 * 209.99841 * 14 12 10 17 17 H 1.48501 * 109.47509 * 329.99935 * 14 12 10 18 18 C 1.46494 * 119.99962 * 89.99979 * 9 8 7 19 19 C 1.54266 * 110.03413 * 242.55395 * 18 9 8 20 20 C 1.54965 * 104.16115 * 217.13889 * 19 18 9 21 21 C 1.54890 * 102.77673 * 37.88375 * 20 19 18 22 22 C 1.53876 * 110.03210 * 125.33470 * 18 9 8 23 23 H 1.09000 * 109.47549 * 300.00523 * 1 2 3 24 24 H 1.09007 * 109.47149 * 60.00465 * 1 2 3 25 25 H 1.08997 * 109.47487 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47042 * 239.99528 * 2 1 3 27 27 H 1.09002 * 109.46678 * 119.99551 * 2 1 3 28 28 H 1.08997 * 109.47645 * 59.99897 * 3 2 1 29 29 H 1.08996 * 109.47292 * 299.99664 * 3 2 1 30 30 H 1.09000 * 109.47549 * 59.99477 * 4 3 2 31 31 H 1.09007 * 109.47149 * 299.99535 * 4 3 2 32 32 H 1.08995 * 109.47012 * 60.00027 * 5 4 3 33 33 H 1.08996 * 109.47195 * 299.99760 * 5 4 3 34 34 H 1.09007 * 109.47276 * 60.00531 * 6 5 4 35 35 H 1.09000 * 109.47856 * 300.00098 * 6 5 4 36 36 H 1.09004 * 109.46587 * 60.00855 * 7 6 5 37 37 H 1.08996 * 109.47477 * 300.00444 * 7 6 5 38 38 H 1.09009 * 109.47081 * 60.00231 * 8 7 6 39 39 H 1.09006 * 109.47455 * 300.00963 * 8 7 6 40 40 H 0.96994 * 120.00671 * 175.03756 * 13 12 10 41 41 H 1.09003 * 110.02021 * 3.94108 * 18 9 8 42 42 H 1.09001 * 110.48191 * 335.78161 * 19 18 9 43 43 H 1.08993 * 110.49048 * 98.42833 * 19 18 9 44 44 H 1.08996 * 110.71728 * 279.57278 * 20 19 18 45 45 H 1.08991 * 110.92807 * 156.29442 * 20 19 18 46 46 H 1.09004 * 110.48690 * 203.41106 * 21 20 19 47 47 H 1.08996 * 110.60249 * 80.82182 * 21 20 19 48 48 H 1.09003 * 110.03137 * 238.57044 * 22 18 9 49 49 H 1.08994 * 110.03073 * 359.97438 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5699 1.4424 -0.0006 5 6 4.0800 2.8850 -0.0013 6 6 5.6099 2.8849 -0.0013 7 6 6.1200 4.3274 -0.0026 8 6 7.6500 4.3274 -0.0032 9 7 8.1384 5.7086 -0.0038 10 6 8.3660 6.3538 -1.1901 11 1 8.1199 7.4005 -1.2914 12 6 8.9133 5.6625 -2.2622 13 7 9.5812 4.5476 -2.0546 14 14 8.7017 6.3147 -3.9998 15 1 9.8305 7.2217 -4.3290 16 1 8.6845 5.1787 -4.9563 17 1 7.4220 7.0620 -4.0958 18 6 8.3831 6.3996 1.2645 19 6 7.4515 7.6229 1.3882 20 6 8.3258 8.6964 2.0845 21 6 9.7190 8.4698 1.4469 22 6 9.8243 6.9375 1.3022 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6766 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.9330 0.9287 -0.8908 31 1 3.9337 0.9285 0.8892 32 1 3.7170 3.3990 0.8887 33 1 3.7163 3.3985 -0.8913 34 1 5.9733 2.3707 -0.8911 35 1 5.9734 2.3715 0.8889 36 1 5.7567 4.8419 0.8871 37 1 5.7566 4.8405 -0.8929 38 1 8.0130 3.8129 -0.8931 39 1 8.0138 3.8141 0.8869 40 1 9.9016 4.0267 -2.8074 41 1 8.2170 5.7180 2.0988 42 1 7.1398 7.9663 0.4018 43 1 6.5832 7.3809 2.0010 44 1 8.3612 8.5262 3.1606 45 1 7.9592 9.6991 1.8655 46 1 10.5044 8.8458 2.1025 47 1 9.7764 8.9500 0.4701 48 1 10.3574 6.5177 2.1552 49 1 10.3417 6.6841 0.3770 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113370068.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:25 Heat of formation + Delta-G solvation = -48.529788 kcal Electronic energy + Delta-G solvation = -20908.815380 eV Core-core repulsion = 18061.673480 eV Total energy + Delta-G solvation = -2847.141900 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.40086 -37.75882 -36.41176 -34.94316 -33.06794 -31.62098 -29.31445 -28.68978 -27.98309 -25.88125 -23.89836 -22.20889 -21.82099 -21.54924 -21.21438 -20.71992 -18.09419 -17.13360 -16.85750 -16.48641 -16.08067 -15.71373 -15.15945 -14.80858 -14.67147 -14.58205 -14.28045 -14.03381 -13.63788 -13.28329 -13.25052 -13.00496 -12.76900 -12.66542 -12.47968 -12.18083 -12.13365 -12.03689 -11.92177 -11.77929 -11.74488 -11.71360 -11.63963 -11.51090 -11.31710 -11.27338 -11.20164 -11.16336 -10.93256 -10.41217 -8.46677 -7.69699 -5.38167 1.43329 1.46693 1.54975 2.54360 3.29356 3.61231 3.86706 4.00486 4.01212 4.05833 4.18791 4.20810 4.28971 4.44514 4.45443 4.48068 4.69123 4.72724 4.77912 4.81037 4.82280 4.88289 4.93836 4.95506 4.96660 5.00582 5.05232 5.11275 5.14739 5.19661 5.23466 5.24377 5.28261 5.33485 5.34778 5.37112 5.45855 5.50490 5.56137 5.59298 5.63475 5.64752 5.72503 5.80097 5.94256 6.55812 7.26823 7.98297 8.50227 9.20112 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.016135 B = 0.004042 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.916608 B = 6925.756452 C = 8069.780504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.118 4.118 4 C -0.116 4.116 5 C -0.111 4.111 6 C -0.108 4.108 7 C -0.116 4.116 8 C 0.148 3.852 9 N -0.594 5.594 10 C -0.237 4.237 11 H 0.050 0.950 12 C -0.037 4.037 13 N -0.916 5.916 14 Si 0.942 3.058 15 H -0.287 1.287 16 H -0.293 1.293 17 H -0.274 1.274 18 C 0.160 3.840 19 C -0.128 4.128 20 C -0.111 4.111 21 C -0.113 4.113 22 C -0.129 4.129 23 H 0.056 0.944 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.044 0.956 35 H 0.061 0.939 36 H 0.048 0.952 37 H 0.033 0.967 38 H 0.058 0.942 39 H 0.019 0.981 40 H 0.247 0.753 41 H 0.052 0.948 42 H 0.046 0.954 43 H 0.061 0.939 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.044 0.956 48 H 0.053 0.947 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.211 -3.129 7.712 14.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.155 4.155 4 C -0.154 4.154 5 C -0.148 4.148 6 C -0.147 4.147 7 C -0.155 4.155 8 C 0.022 3.978 9 N -0.314 5.314 10 C -0.368 4.368 11 H 0.068 0.932 12 C -0.234 4.234 13 N -0.561 5.561 14 Si 0.770 3.230 15 H -0.214 1.214 16 H -0.219 1.219 17 H -0.200 1.200 18 C 0.054 3.946 19 C -0.168 4.168 20 C -0.149 4.149 21 C -0.151 4.151 22 C -0.168 4.168 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.038 0.962 40 H 0.056 0.944 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.097 0.903 45 H 0.089 0.911 46 H 0.092 0.908 47 H 0.063 0.937 48 H 0.072 0.928 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -12.064 -3.214 7.609 14.621 hybrid contribution 0.354 0.092 -1.360 1.409 sum -11.710 -3.122 6.248 13.635 Atomic orbital electron populations 1.21778 0.95325 1.01959 1.01885 1.21543 0.96341 0.96439 1.02005 1.21605 0.94740 0.97210 1.01959 1.21584 0.95834 0.96041 1.01892 1.21533 0.94407 0.97301 1.01596 1.21471 0.95932 0.96188 1.01079 1.21935 0.97784 0.96076 0.99753 1.20854 0.91393 0.86103 0.99469 1.44156 1.74589 1.11637 1.00982 1.18960 1.32579 0.95263 0.89970 0.93214 1.25709 0.96863 0.98992 1.01813 1.70190 1.37527 1.18231 1.30178 0.85696 0.77974 0.77342 0.81945 1.21360 1.21937 1.19965 1.21281 0.92709 0.93059 0.87600 1.22730 0.98084 0.96435 0.99512 1.22404 0.94452 0.98307 0.99698 1.22213 0.97936 0.95141 0.99788 1.22463 0.98383 0.96220 0.99774 0.92538 0.92858 0.92165 0.92307 0.91839 0.91798 0.92447 0.92634 0.91726 0.91813 0.93021 0.93686 0.92010 0.93350 0.94805 0.92431 0.96244 0.94420 0.92968 0.93483 0.92048 0.90291 0.91146 0.90824 0.93690 0.92834 0.94347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.91 71.98 0.71 -1.48 16 2 C -0.13 -2.09 5.93 30.59 0.18 -1.91 16 3 C -0.12 -2.25 5.21 30.59 0.16 -2.09 16 4 C -0.12 -2.59 5.21 30.60 0.16 -2.43 16 5 C -0.11 -2.96 5.21 30.60 0.16 -2.80 16 6 C -0.11 -3.54 5.21 30.59 0.16 -3.38 16 7 C -0.12 -4.59 5.54 30.59 0.17 -4.42 16 8 C 0.15 7.01 5.28 86.38 0.46 7.47 16 9 N -0.59 -29.38 2.38 -674.00 -1.60 -30.99 16 10 C -0.24 -12.88 7.75 84.03 0.65 -12.23 16 11 H 0.05 2.75 6.94 -2.91 -0.02 2.73 16 12 C -0.04 -2.07 4.96 84.86 0.42 -1.65 16 13 N -0.92 -54.01 11.48 21.65 0.25 -53.76 16 14 Si 0.94 45.29 29.60 68.60 2.03 47.32 16 15 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 16 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 17 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 18 C 0.16 6.71 3.42 45.72 0.16 6.87 16 19 C -0.13 -4.64 6.43 31.70 0.20 -4.44 16 20 C -0.11 -3.27 6.91 31.91 0.22 -3.05 16 21 C -0.11 -3.80 6.83 31.67 0.22 -3.58 16 22 C -0.13 -5.28 6.24 31.32 0.20 -5.08 16 23 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.06 3.16 5.55 -2.38 -0.01 3.14 16 39 H 0.02 0.89 7.90 -2.38 -0.02 0.87 16 40 H 0.25 14.16 8.32 -92.71 -0.77 13.39 16 41 H 0.05 2.09 7.81 -2.39 -0.02 2.07 16 42 H 0.05 1.94 6.64 -2.39 -0.02 1.92 16 43 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 47 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 49 H 0.04 1.92 7.17 -2.39 -0.02 1.90 16 Total: -1.00 -59.60 376.17 5.74 -53.87 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 0.84 Total: 17.76 kcal Atomic # 6 Polarization: -38.43 SS G_CDS: 4.22 Total: -34.21 kcal Atomic # 7 Polarization: -83.39 SS G_CDS: -1.36 Total: -84.75 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -59.60 5.74 -53.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113370068.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.337 kcal (2) G-P(sol) polarization free energy of solvation -59.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds