Wall clock time and date at job start Mon Mar 30 2020 07:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46957 * 2 1 4 4 H 1.09005 * 109.47036 * 175.24783 * 3 2 1 5 5 C 1.50694 * 109.47457 * 55.24688 * 3 2 1 6 6 H 1.07996 * 120.00179 * 245.79908 * 5 3 2 7 7 C 1.37887 * 120.00249 * 65.79596 * 5 3 2 8 8 N 1.31514 * 119.99404 * 5.56975 * 7 5 3 9 9 Si 1.86792 * 120.00217 * 185.57345 * 7 5 3 10 10 H 1.48503 * 109.47214 * 270.00094 * 9 7 5 11 11 H 1.48504 * 109.47255 * 29.99809 * 9 7 5 12 12 H 1.48499 * 109.47257 * 149.99606 * 9 7 5 13 13 N 1.46900 * 109.47277 * 295.24367 * 3 2 1 14 14 C 1.46904 * 110.99964 * 279.71655 * 13 3 2 15 15 H 1.08995 * 108.87638 * 39.73044 * 14 13 3 16 16 C 1.54249 * 108.89565 * 281.12379 * 14 13 3 17 17 C 1.50553 * 108.48112 * 159.17881 * 16 14 13 18 18 C 1.54067 * 112.41327 * 94.27145 * 17 16 14 19 19 C 1.54069 * 112.81313 * 318.27437 * 18 17 16 20 20 H 1.08998 * 108.87691 * 79.06929 * 19 18 17 21 21 C 1.53003 * 108.79716 * 197.56207 * 19 18 17 22 22 C 1.52992 * 109.47317 * 188.30808 * 21 19 18 23 23 C 1.52994 * 109.47298 * 308.31530 * 21 19 18 24 24 C 1.50472 * 112.49904 * 318.28758 * 19 18 17 25 25 C 1.45541 * 108.89413 * 158.33673 * 14 13 3 26 26 H 1.08998 * 109.47334 * 184.94610 * 1 2 3 27 27 H 1.09002 * 109.46748 * 304.94119 * 1 2 3 28 28 H 1.08995 * 109.47343 * 64.94365 * 1 2 3 29 29 H 1.09006 * 109.46683 * 240.00040 * 2 1 3 30 30 H 1.09004 * 109.47153 * 120.00604 * 2 1 3 31 31 H 0.97003 * 120.00406 * 355.17371 * 8 7 5 32 32 H 1.00901 * 111.00052 * 155.76023 * 13 3 2 33 33 H 1.08999 * 109.62387 * 278.97600 * 16 14 13 34 34 H 1.09000 * 109.62436 * 39.55071 * 16 14 13 35 35 H 1.08992 * 108.92571 * 333.51290 * 17 16 14 36 36 H 1.09006 * 108.83165 * 214.96378 * 17 16 14 37 37 H 1.08996 * 108.81148 * 197.41728 * 18 17 16 38 38 H 1.08995 * 108.72691 * 79.07678 * 18 17 16 39 39 H 1.09008 * 109.46813 * 68.31108 * 21 19 18 40 40 H 1.09009 * 109.46953 * 64.89697 * 22 21 19 41 41 H 1.09001 * 109.47505 * 184.89386 * 22 21 19 42 42 H 1.08997 * 109.47462 * 304.89915 * 22 21 19 43 43 H 1.09008 * 109.46843 * 299.99559 * 23 21 19 44 44 H 1.08997 * 109.47609 * 59.99744 * 23 21 19 45 45 H 1.08999 * 109.47573 * 180.02562 * 23 21 19 46 46 H 1.09007 * 109.62632 * 334.44394 * 24 19 18 47 47 H 1.09002 * 109.62916 * 213.86788 * 24 19 18 48 48 H 1.09002 * 108.89413 * 303.44059 * 25 14 13 49 49 H 1.08997 * 108.89983 * 62.02937 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1267 1.4437 0.0851 5 6 1.4438 2.1861 1.1673 6 1 0.7586 3.0027 0.9943 7 6 1.7732 1.8239 2.4563 8 7 2.6893 0.9041 2.6671 9 14 0.9182 2.6394 3.9030 10 1 1.6805 3.8465 4.3122 11 1 -0.4576 3.0336 3.5069 12 1 0.8521 1.6867 5.0402 13 7 1.6463 2.1010 -1.2527 14 6 2.5542 1.7347 -2.3479 15 1 2.8019 0.6768 -2.2618 16 6 3.8494 2.5629 -2.2212 17 6 4.9421 1.8590 -2.9809 18 6 5.0885 2.3848 -4.4217 19 6 3.7315 2.6289 -5.1093 20 1 3.3237 3.5768 -4.7582 21 6 3.9531 2.7156 -6.6207 22 6 2.6576 3.1616 -7.3014 23 6 5.0600 3.7295 -6.9165 24 6 2.7371 1.5360 -4.8249 25 6 1.8768 1.9585 -3.6165 26 1 -0.3634 -1.0238 0.0886 27 1 -0.3633 0.5886 0.8425 28 1 -0.3634 0.4352 -0.9309 29 1 1.8933 -0.5139 -0.8901 30 1 1.8934 -0.5139 0.8900 31 1 3.0830 0.4308 1.9174 32 1 1.6046 3.1025 -1.1371 33 1 3.6911 3.5564 -2.6405 34 1 4.1296 2.6459 -1.1711 35 1 4.7183 0.7929 -3.0156 36 1 5.8859 2.0040 -2.4551 37 1 5.6526 1.6576 -5.0056 38 1 5.6439 3.3223 -4.3974 39 1 4.2455 1.7370 -7.0017 40 1 2.4118 4.1756 -6.9857 41 1 2.7893 3.1398 -8.3832 42 1 1.8486 2.4874 -7.0202 43 1 4.7676 4.7081 -6.5354 44 1 5.9830 3.4118 -6.4316 45 1 5.2176 3.7917 -7.9932 46 1 3.2657 0.6113 -4.5927 47 1 2.0979 1.3869 -5.6952 48 1 0.9488 1.3868 -3.6267 49 1 1.6390 3.0183 -3.7076 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226538501.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:00 Heat of formation + Delta-G solvation = -43.236978 kcal Electronic energy + Delta-G solvation = -22110.160290 eV Core-core repulsion = 19263.247903 eV Total energy + Delta-G solvation = -2846.912387 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.62441 -36.95196 -34.83616 -32.60253 -31.64091 -30.68454 -28.66630 -27.47531 -25.38826 -24.49712 -23.60925 -22.95418 -20.80566 -20.19231 -19.18083 -18.78042 -16.93099 -15.77010 -14.97458 -14.66381 -14.46264 -14.05361 -13.89375 -13.66605 -13.57129 -13.08727 -12.89261 -12.87243 -12.34936 -12.17887 -12.07175 -11.88624 -11.60212 -11.40275 -11.32274 -11.21319 -10.98737 -10.76169 -10.69454 -10.43059 -10.27744 -10.12664 -10.09569 -10.04514 -9.91636 -9.86532 -9.67997 -9.64412 -8.46577 -8.25701 -7.23977 -6.30044 -4.01341 3.44057 3.48686 3.63818 4.52864 4.60545 4.74980 4.75445 4.95861 5.09094 5.24836 5.35262 5.42288 5.43654 5.46637 5.48228 5.52811 5.62310 5.70183 5.73942 5.77913 5.82843 5.92051 5.97627 6.05668 6.09530 6.17797 6.27271 6.33312 6.35466 6.38315 6.42158 6.45735 6.49003 6.55045 6.64391 6.65769 6.75256 6.86717 7.02771 7.16290 7.32403 7.52121 7.61046 7.96656 8.19729 8.60150 8.66685 8.93666 9.69529 11.06544 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.031525 B = 0.004285 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.983812 B = 6532.851677 C = 6780.085681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.106 4.106 3 C 0.204 3.796 4 H -0.007 1.007 5 C -0.589 4.589 6 H 0.052 0.948 7 C 0.022 3.978 8 N -0.914 5.914 9 Si 1.067 2.933 10 H -0.290 1.290 11 H -0.288 1.288 12 H -0.285 1.285 13 N -0.678 5.678 14 C 0.089 3.911 15 H 0.064 0.936 16 C -0.146 4.146 17 C -0.114 4.114 18 C -0.107 4.107 19 C -0.079 4.079 20 H 0.068 0.932 21 C -0.094 4.094 22 C -0.150 4.150 23 C -0.149 4.149 24 C -0.115 4.115 25 C -0.101 4.101 26 H 0.015 0.985 27 H 0.062 0.938 28 H 0.044 0.956 29 H 0.019 0.981 30 H 0.055 0.945 31 H 0.271 0.729 32 H 0.331 0.669 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.053 0.947 41 H 0.049 0.951 42 H 0.060 0.940 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.048 0.952 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.063 0.937 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.885 2.938 -17.229 17.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.145 4.145 3 C 0.095 3.905 4 H 0.011 0.989 5 C -0.627 4.627 6 H 0.071 0.929 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.896 3.104 10 H -0.217 1.217 11 H -0.214 1.214 12 H -0.211 1.211 13 N -0.307 5.307 14 C -0.022 4.022 15 H 0.082 0.918 16 C -0.186 4.186 17 C -0.152 4.152 18 C -0.145 4.145 19 C -0.097 4.097 20 H 0.086 0.914 21 C -0.113 4.113 22 C -0.207 4.207 23 C -0.206 4.206 24 C -0.153 4.153 25 C -0.139 4.139 26 H 0.034 0.966 27 H 0.081 0.919 28 H 0.063 0.937 29 H 0.037 0.963 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.149 0.851 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.079 0.921 47 H 0.083 0.917 48 H 0.082 0.918 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.371 2.525 -15.710 16.087 hybrid contribution 0.933 0.415 -1.391 1.726 sum 3.303 2.940 -17.101 17.664 Atomic orbital electron populations 1.21447 0.96548 0.97713 1.01961 1.21522 0.96331 0.98556 0.98096 1.19222 0.93222 0.91412 0.86609 0.98906 1.21959 1.30339 1.18609 0.91823 0.92945 1.25673 0.95598 0.96959 1.00053 1.70760 1.24293 1.24314 1.35751 0.83570 0.75600 0.75673 0.75535 1.21698 1.21433 1.21120 1.60803 1.50292 1.13193 1.06379 1.20461 0.90375 0.98849 0.92493 0.91754 1.22098 0.96619 0.99481 1.00372 1.21292 0.98763 1.00288 0.94865 1.21986 0.96578 1.00448 0.95464 1.21016 0.95511 0.99604 0.93587 0.91380 1.21251 0.95349 0.99000 0.95668 1.21926 0.97600 1.01504 0.99682 1.21905 0.98732 0.99219 1.00765 1.21468 0.97345 0.98383 0.98075 1.20415 0.98752 1.01230 0.93509 0.96572 0.91867 0.93651 0.96263 0.92613 0.91713 0.85128 0.92292 0.91612 0.92375 0.92972 0.92723 0.92626 0.91558 0.92816 0.93202 0.92098 0.92844 0.92441 0.93271 0.92053 0.91718 0.91846 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 9.53 37.16 0.35 -2.32 16 2 C -0.11 -2.52 5.45 -26.73 -0.15 -2.67 16 3 C 0.20 4.97 1.69 -68.87 -0.12 4.85 16 4 H -0.01 -0.17 6.21 -51.93 -0.32 -0.50 16 5 C -0.59 -15.92 6.92 -34.44 -0.24 -16.16 16 6 H 0.05 1.44 7.75 -52.49 -0.41 1.03 16 7 C 0.02 0.60 5.28 -17.82 -0.09 0.51 16 8 N -0.91 -27.07 13.20 55.43 0.73 -26.33 16 9 Si 1.07 25.09 29.91 -169.99 -5.08 20.01 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.68 -14.00 5.46 -104.00 -0.57 -14.57 16 14 C 0.09 1.53 1.83 -70.57 -0.13 1.40 16 15 H 0.06 1.22 6.03 -51.93 -0.31 0.90 16 16 C -0.15 -2.38 4.88 -27.30 -0.13 -2.51 16 17 C -0.11 -1.59 5.32 -27.40 -0.15 -1.73 16 18 C -0.11 -1.24 4.02 -25.62 -0.10 -1.34 16 19 C -0.08 -0.88 1.33 -91.32 -0.12 -1.00 16 20 H 0.07 0.83 6.61 -51.93 -0.34 0.49 16 21 C -0.09 -0.90 2.34 -90.63 -0.21 -1.11 16 22 C -0.15 -1.35 9.05 37.15 0.34 -1.02 16 23 C -0.15 -1.32 8.65 37.15 0.32 -1.00 16 24 C -0.11 -1.39 4.98 -27.35 -0.14 -1.52 16 25 C -0.10 -1.48 4.77 -29.60 -0.14 -1.62 16 26 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 1.54 6.89 -51.93 -0.36 1.18 16 28 H 0.04 0.97 7.88 -51.93 -0.41 0.56 16 29 H 0.02 0.42 6.96 -51.93 -0.36 0.06 16 30 H 0.06 1.44 6.19 -51.93 -0.32 1.12 16 31 H 0.27 8.01 5.63 -40.82 -0.23 7.78 16 32 H 0.33 6.93 8.21 -39.29 -0.32 6.60 16 33 H 0.06 0.91 6.97 -51.93 -0.36 0.55 16 34 H 0.07 1.27 6.81 -51.93 -0.35 0.91 16 35 H 0.06 0.84 6.63 -51.93 -0.34 0.49 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.59 7.92 -51.93 -0.41 0.18 16 38 H 0.05 0.62 7.33 -51.93 -0.38 0.24 16 39 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 40 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.56 6.13 -51.93 -0.32 0.24 16 43 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 44 H 0.06 0.50 6.60 -51.93 -0.34 0.16 16 45 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 0.78 6.98 -51.93 -0.36 0.41 16 47 H 0.06 0.71 5.74 -51.93 -0.30 0.41 16 48 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.05 0.79 7.46 -51.93 -0.39 0.40 16 LS Contribution 348.00 15.07 5.24 5.24 Total: -1.00 -27.78 348.00 -9.51 -37.28 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -9.13 Total: 5.61 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: -0.70 Total: -27.24 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.16 Total: -40.90 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.08 Total: 20.01 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -27.78 -9.51 -37.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226538501.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.953 kcal (2) G-P(sol) polarization free energy of solvation -27.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds