Wall clock time and date at job start Mon Mar 30 2020 07:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46957 * 2 1 4 4 H 1.09005 * 109.47036 * 175.24783 * 3 2 1 5 5 C 1.50694 * 109.47457 * 55.24688 * 3 2 1 6 6 H 1.07996 * 120.00179 * 245.79908 * 5 3 2 7 7 C 1.37887 * 120.00249 * 65.79596 * 5 3 2 8 8 N 1.31514 * 119.99404 * 5.56975 * 7 5 3 9 9 Si 1.86792 * 120.00217 * 185.57345 * 7 5 3 10 10 H 1.48503 * 109.47214 * 270.00094 * 9 7 5 11 11 H 1.48504 * 109.47255 * 29.99809 * 9 7 5 12 12 H 1.48499 * 109.47257 * 149.99606 * 9 7 5 13 13 N 1.46900 * 109.47277 * 295.24367 * 3 2 1 14 14 C 1.46904 * 110.99964 * 279.71655 * 13 3 2 15 15 H 1.08995 * 108.87638 * 39.73044 * 14 13 3 16 16 C 1.54249 * 108.89565 * 281.12379 * 14 13 3 17 17 C 1.50553 * 108.48112 * 159.17881 * 16 14 13 18 18 C 1.54067 * 112.41327 * 94.27145 * 17 16 14 19 19 C 1.54069 * 112.81313 * 318.27437 * 18 17 16 20 20 H 1.08998 * 108.87691 * 79.06929 * 19 18 17 21 21 C 1.53003 * 108.79716 * 197.56207 * 19 18 17 22 22 C 1.52992 * 109.47317 * 188.30808 * 21 19 18 23 23 C 1.52994 * 109.47298 * 308.31530 * 21 19 18 24 24 C 1.50472 * 112.49904 * 318.28758 * 19 18 17 25 25 C 1.45541 * 108.89413 * 158.33673 * 14 13 3 26 26 H 1.08998 * 109.47334 * 184.94610 * 1 2 3 27 27 H 1.09002 * 109.46748 * 304.94119 * 1 2 3 28 28 H 1.08995 * 109.47343 * 64.94365 * 1 2 3 29 29 H 1.09006 * 109.46683 * 240.00040 * 2 1 3 30 30 H 1.09004 * 109.47153 * 120.00604 * 2 1 3 31 31 H 0.97003 * 120.00406 * 355.17371 * 8 7 5 32 32 H 1.00901 * 111.00052 * 155.76023 * 13 3 2 33 33 H 1.08999 * 109.62387 * 278.97600 * 16 14 13 34 34 H 1.09000 * 109.62436 * 39.55071 * 16 14 13 35 35 H 1.08992 * 108.92571 * 333.51290 * 17 16 14 36 36 H 1.09006 * 108.83165 * 214.96378 * 17 16 14 37 37 H 1.08996 * 108.81148 * 197.41728 * 18 17 16 38 38 H 1.08995 * 108.72691 * 79.07678 * 18 17 16 39 39 H 1.09008 * 109.46813 * 68.31108 * 21 19 18 40 40 H 1.09009 * 109.46953 * 64.89697 * 22 21 19 41 41 H 1.09001 * 109.47505 * 184.89386 * 22 21 19 42 42 H 1.08997 * 109.47462 * 304.89915 * 22 21 19 43 43 H 1.09008 * 109.46843 * 299.99559 * 23 21 19 44 44 H 1.08997 * 109.47609 * 59.99744 * 23 21 19 45 45 H 1.08999 * 109.47573 * 180.02562 * 23 21 19 46 46 H 1.09007 * 109.62632 * 334.44394 * 24 19 18 47 47 H 1.09002 * 109.62916 * 213.86788 * 24 19 18 48 48 H 1.09002 * 108.89413 * 303.44059 * 25 14 13 49 49 H 1.08997 * 108.89983 * 62.02937 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1267 1.4437 0.0851 5 6 1.4438 2.1861 1.1673 6 1 0.7586 3.0027 0.9943 7 6 1.7732 1.8239 2.4563 8 7 2.6893 0.9041 2.6671 9 14 0.9182 2.6394 3.9030 10 1 1.6805 3.8465 4.3122 11 1 -0.4576 3.0336 3.5069 12 1 0.8521 1.6867 5.0402 13 7 1.6463 2.1010 -1.2527 14 6 2.5542 1.7347 -2.3479 15 1 2.8019 0.6768 -2.2618 16 6 3.8494 2.5629 -2.2212 17 6 4.9421 1.8590 -2.9809 18 6 5.0885 2.3848 -4.4217 19 6 3.7315 2.6289 -5.1093 20 1 3.3237 3.5768 -4.7582 21 6 3.9531 2.7156 -6.6207 22 6 2.6576 3.1616 -7.3014 23 6 5.0600 3.7295 -6.9165 24 6 2.7371 1.5360 -4.8249 25 6 1.8768 1.9585 -3.6165 26 1 -0.3634 -1.0238 0.0886 27 1 -0.3633 0.5886 0.8425 28 1 -0.3634 0.4352 -0.9309 29 1 1.8933 -0.5139 -0.8901 30 1 1.8934 -0.5139 0.8900 31 1 3.0830 0.4308 1.9174 32 1 1.6046 3.1025 -1.1371 33 1 3.6911 3.5564 -2.6405 34 1 4.1296 2.6459 -1.1711 35 1 4.7183 0.7929 -3.0156 36 1 5.8859 2.0040 -2.4551 37 1 5.6526 1.6576 -5.0056 38 1 5.6439 3.3223 -4.3974 39 1 4.2455 1.7370 -7.0017 40 1 2.4118 4.1756 -6.9857 41 1 2.7893 3.1398 -8.3832 42 1 1.8486 2.4874 -7.0202 43 1 4.7676 4.7081 -6.5354 44 1 5.9830 3.4118 -6.4316 45 1 5.2176 3.7917 -7.9932 46 1 3.2657 0.6113 -4.5927 47 1 2.0979 1.3869 -5.6952 48 1 0.9488 1.3868 -3.6267 49 1 1.6390 3.0183 -3.7076 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226538501.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:59 Heat of formation + Delta-G solvation = -57.078275 kcal Electronic energy + Delta-G solvation = -22110.760494 eV Core-core repulsion = 19263.247903 eV Total energy + Delta-G solvation = -2847.512590 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.80710 -38.41316 -36.32160 -34.05941 -33.11918 -32.28749 -30.05110 -28.32085 -27.17562 -25.68580 -25.43064 -24.30652 -21.89641 -21.45607 -20.92378 -19.84359 -18.91626 -17.01807 -16.45568 -15.80081 -15.66550 -15.58512 -15.42272 -15.24233 -14.79718 -14.52380 -14.28054 -14.06172 -13.75257 -13.57288 -13.20903 -13.06830 -12.96019 -12.66738 -12.59652 -12.48269 -12.36656 -12.18655 -12.00885 -11.94162 -11.75552 -11.70532 -11.60621 -11.51514 -11.27883 -11.06157 -10.98082 -10.86919 -10.55054 -10.35122 -9.00207 -8.53551 -6.25093 1.53278 1.61720 1.78846 2.58122 3.25555 3.45313 3.65770 3.84007 3.87340 4.04378 4.15993 4.29985 4.36811 4.40281 4.45626 4.48961 4.50532 4.57721 4.60898 4.70694 4.77894 4.80855 4.86026 4.90389 4.97365 5.02796 5.06339 5.08066 5.15726 5.19568 5.23138 5.24288 5.25844 5.36066 5.38400 5.42184 5.42764 5.49394 5.52240 5.59487 5.63022 5.69406 5.71728 5.96457 6.15751 6.55400 6.69357 6.89707 7.54263 8.83198 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.031525 B = 0.004285 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.983812 B = 6532.851677 C = 6780.085681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.101 4.101 3 C 0.210 3.790 4 H -0.040 1.040 5 C -0.591 4.591 6 H 0.048 0.952 7 C -0.026 4.026 8 N -0.940 5.940 9 Si 1.111 2.889 10 H -0.278 1.278 11 H -0.272 1.272 12 H -0.287 1.287 13 N -0.674 5.674 14 C 0.095 3.905 15 H 0.047 0.953 16 C -0.137 4.137 17 C -0.112 4.112 18 C -0.101 4.101 19 C -0.076 4.076 20 H 0.060 0.940 21 C -0.090 4.090 22 C -0.150 4.150 23 C -0.148 4.148 24 C -0.107 4.107 25 C -0.095 4.095 26 H 0.037 0.963 27 H 0.040 0.960 28 H 0.054 0.946 29 H 0.032 0.968 30 H 0.029 0.971 31 H 0.259 0.741 32 H 0.330 0.670 33 H 0.069 0.931 34 H 0.027 0.973 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.050 0.950 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.049 0.951 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.082 0.918 48 H 0.055 0.945 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.411 3.551 -19.175 19.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.140 4.140 3 C 0.101 3.899 4 H -0.023 1.023 5 C -0.630 4.630 6 H 0.066 0.934 7 C -0.225 4.225 8 N -0.578 5.578 9 Si 0.934 3.066 10 H -0.204 1.204 11 H -0.197 1.197 12 H -0.213 1.213 13 N -0.303 5.303 14 C -0.015 4.015 15 H 0.065 0.935 16 C -0.176 4.176 17 C -0.150 4.150 18 C -0.138 4.138 19 C -0.094 4.094 20 H 0.078 0.922 21 C -0.108 4.108 22 C -0.207 4.207 23 C -0.206 4.206 24 C -0.145 4.145 25 C -0.133 4.133 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.147 0.853 33 H 0.088 0.912 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.100 0.900 48 H 0.074 0.926 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.897 3.144 -17.690 18.067 hybrid contribution 1.099 0.221 -0.831 1.395 sum 2.996 3.365 -18.521 19.061 Atomic orbital electron populations 1.21322 0.95097 0.98803 1.01366 1.21417 0.97470 0.97737 0.97388 1.19009 0.91033 0.92099 0.87742 1.02250 1.22226 1.29635 1.18296 0.92826 0.93415 1.26979 0.95497 0.96913 1.03076 1.70872 1.25916 1.25759 1.35257 0.83004 0.75610 0.75213 0.72783 1.20395 1.19651 1.21269 1.60790 1.51214 1.12780 1.05527 1.20512 0.90553 0.97851 0.92585 0.93504 1.21949 0.96951 1.00230 0.98444 1.21254 0.97604 0.99660 0.96467 1.21942 0.97240 1.01062 0.93559 1.20968 0.94805 0.98663 0.94999 0.92179 1.21208 0.95971 0.99574 0.94087 1.21921 0.97137 1.01236 1.00370 1.21897 0.98384 0.98772 1.01509 1.21421 0.97369 0.98412 0.97256 1.20335 0.98572 1.01411 0.93007 0.94346 0.94112 0.92708 0.94957 0.95259 0.93031 0.85346 0.91198 0.95443 0.93044 0.93106 0.91335 0.91872 0.91060 0.93097 0.92086 0.92292 0.93145 0.92383 0.92232 0.92487 0.89992 0.92626 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.80 9.53 71.98 0.69 -4.12 16 2 C -0.10 -4.89 5.45 30.59 0.17 -4.73 16 3 C 0.21 10.57 1.69 44.17 0.07 10.65 16 4 H -0.04 -2.25 6.21 -2.38 -0.01 -2.26 16 5 C -0.59 -32.57 6.92 25.60 0.18 -32.39 16 6 H 0.05 2.63 7.75 -2.91 -0.02 2.61 16 7 C -0.03 -1.48 5.28 84.66 0.45 -1.03 16 8 N -0.94 -57.18 13.20 21.45 0.28 -56.89 16 9 Si 1.11 50.62 29.91 68.60 2.05 52.67 16 10 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 12 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 13 N -0.67 -28.21 5.46 -482.94 -2.64 -30.85 16 14 C 0.09 3.28 1.83 43.06 0.08 3.36 16 15 H 0.05 1.79 6.03 -2.39 -0.01 1.78 16 16 C -0.14 -4.50 4.88 30.22 0.15 -4.35 16 17 C -0.11 -3.07 5.32 30.16 0.16 -2.91 16 18 C -0.10 -2.12 4.02 31.32 0.13 -1.99 16 19 C -0.08 -1.52 1.33 -11.25 -0.01 -1.53 16 20 H 0.06 1.33 6.61 -2.39 -0.02 1.31 16 21 C -0.09 -1.46 2.34 -10.80 -0.03 -1.48 16 22 C -0.15 -2.27 9.05 71.98 0.65 -1.62 16 23 C -0.15 -2.21 8.65 71.98 0.62 -1.58 16 24 C -0.11 -2.36 4.98 30.20 0.15 -2.21 16 25 C -0.10 -2.68 4.77 28.73 0.14 -2.54 16 26 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.04 1.96 6.89 -2.39 -0.02 1.95 16 28 H 0.05 2.29 7.88 -2.39 -0.02 2.27 16 29 H 0.03 1.44 6.96 -2.38 -0.02 1.42 16 30 H 0.03 1.55 6.19 -2.38 -0.01 1.54 16 31 H 0.26 15.99 5.63 -92.71 -0.52 15.46 16 32 H 0.33 13.93 8.21 -89.69 -0.74 13.20 16 33 H 0.07 2.12 6.97 -2.39 -0.02 2.11 16 34 H 0.03 1.10 6.81 -2.39 -0.02 1.08 16 35 H 0.05 1.48 6.63 -2.39 -0.02 1.46 16 36 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.07 1.29 7.92 -2.39 -0.02 1.27 16 38 H 0.06 1.26 7.33 -2.39 -0.02 1.25 16 39 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.06 0.91 6.13 -2.39 -0.01 0.90 16 43 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 44 H 0.06 0.86 6.60 -2.39 -0.02 0.84 16 45 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.06 1.34 6.98 -2.38 -0.02 1.32 16 47 H 0.08 1.57 5.74 -2.39 -0.01 1.56 16 48 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.06 1.60 7.46 -2.39 -0.02 1.58 16 Total: -1.00 -60.51 348.00 3.69 -56.82 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.41 Total: 26.76 kcal Atomic # 6 Polarization: -52.08 SS G_CDS: 3.59 Total: -48.50 kcal Atomic # 7 Polarization: -85.39 SS G_CDS: -2.36 Total: -87.74 kcal Atomic # 14 Polarization: 50.62 SS G_CDS: 2.05 Total: 52.67 kcal Total: -60.51 3.69 -56.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226538501.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.261 kcal (2) G-P(sol) polarization free energy of solvation -60.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds