Wall clock time and date at job start Mon Mar 30 2020 07:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46694 * 2 1 4 4 H 1.08992 * 109.47358 * 303.91965 * 3 2 1 5 5 C 1.50706 * 109.46968 * 183.92482 * 3 2 1 6 6 H 1.08002 * 119.99728 * 240.00420 * 5 3 2 7 7 C 1.37878 * 120.00151 * 59.99735 * 5 3 2 8 8 N 1.31518 * 119.99988 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00197 * 180.02562 * 7 5 3 10 10 H 1.48509 * 109.47018 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47544 * 120.00099 * 9 7 5 12 12 H 1.48501 * 109.46919 * 240.00392 * 9 7 5 13 13 N 1.46897 * 109.47277 * 63.92607 * 3 2 1 14 14 C 1.46898 * 111.00090 * 204.43684 * 13 3 2 15 15 H 1.09002 * 108.85132 * 325.66424 * 14 13 3 16 16 C 1.50464 * 108.80051 * 84.17754 * 14 13 3 17 17 C 1.54241 * 108.52659 * 214.87769 * 16 14 13 18 18 C 1.45548 * 112.40040 * 280.01235 * 17 16 14 19 19 C 1.54242 * 112.40518 * 61.93798 * 18 17 16 20 20 H 1.09002 * 109.63022 * 39.71556 * 19 18 17 21 21 C 1.53000 * 109.62714 * 160.10335 * 19 18 17 22 22 C 1.53001 * 109.46903 * 179.97438 * 21 19 18 23 23 C 1.52995 * 109.46898 * 299.99668 * 21 19 18 24 24 C 1.50478 * 108.51926 * 280.00806 * 19 18 17 25 25 C 1.54063 * 108.87705 * 207.11063 * 14 13 3 26 26 H 1.08998 * 109.46702 * 174.94797 * 1 2 3 27 27 H 1.09000 * 109.47024 * 294.94706 * 1 2 3 28 28 H 1.09000 * 109.46968 * 54.94854 * 1 2 3 29 29 H 1.09001 * 109.46924 * 240.00448 * 2 1 3 30 30 H 1.08995 * 109.47281 * 119.99873 * 2 1 3 31 31 H 0.96995 * 119.99992 * 179.97438 * 8 7 5 32 32 H 1.00906 * 111.00007 * 80.47720 * 13 3 2 33 33 H 1.09004 * 109.63012 * 334.58915 * 16 14 13 34 34 H 1.09008 * 109.63014 * 95.16276 * 16 14 13 35 35 H 1.08998 * 108.89599 * 159.26119 * 17 16 14 36 36 H 1.08992 * 108.89315 * 40.76038 * 17 16 14 37 37 H 1.08996 * 108.89540 * 301.17820 * 18 17 16 38 38 H 1.09003 * 108.89040 * 182.68304 * 18 17 16 39 39 H 1.08999 * 109.47178 * 59.99685 * 21 19 18 40 40 H 1.08999 * 109.47145 * 60.00051 * 22 21 19 41 41 H 1.09000 * 109.46832 * 179.97438 * 22 21 19 42 42 H 1.08996 * 109.47435 * 299.99845 * 22 21 19 43 43 H 1.09008 * 109.47211 * 179.97438 * 23 21 19 44 44 H 1.08999 * 109.47219 * 299.99991 * 23 21 19 45 45 H 1.09000 * 109.47230 * 60.00654 * 23 21 19 46 46 H 1.09005 * 108.87476 * 214.92902 * 24 19 18 47 47 H 1.09001 * 108.87564 * 333.37306 * 24 19 18 48 48 H 1.09003 * 108.82090 * 76.74422 * 25 14 13 49 49 H 1.09005 * 108.81717 * 318.46355 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6204 1.9762 -0.8527 5 6 3.5439 1.4437 -0.0973 6 1 4.1353 1.8932 0.6867 7 6 4.1647 0.8709 -1.1870 8 7 3.4445 0.3240 -2.1418 9 14 6.0288 0.8718 -1.3072 10 1 6.6015 1.5446 -0.1135 11 1 6.5214 -0.5276 -1.3712 12 1 6.4454 1.5998 -2.5326 13 7 1.6292 2.1071 1.2440 14 6 1.5663 3.5640 1.0666 15 1 2.3499 3.8684 0.3727 16 6 0.2288 3.9236 0.4788 17 6 0.4187 5.1200 -0.4760 18 6 0.4993 6.3884 0.2334 19 6 1.7065 6.4505 1.1915 20 1 2.5708 5.9803 0.7224 21 6 2.0293 7.9101 1.5174 22 6 3.2266 7.9675 2.4682 23 6 2.3665 8.6584 0.2262 24 6 1.3529 5.7126 2.4543 25 6 1.8142 4.2429 2.4272 26 1 -0.3633 -1.0237 -0.0905 27 1 -0.3633 0.4334 0.9318 28 1 -0.3633 0.5902 -0.8413 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.8812 -0.0786 -2.9086 32 1 2.2444 1.8617 2.0053 33 1 -0.1686 3.0729 -0.0749 34 1 -0.4603 4.1983 1.2775 35 1 -0.4221 5.1558 -1.1687 36 1 1.3368 4.9750 -1.0451 37 1 -0.4156 6.5298 0.8087 38 1 0.5846 7.1951 -0.4946 39 1 1.1659 8.3759 1.9924 40 1 4.0902 7.5016 1.9936 41 1 3.4569 9.0074 2.7001 42 1 2.9861 7.4345 3.3881 43 1 2.5960 9.6984 0.4584 44 1 3.2299 8.1926 -0.2488 45 1 1.5132 8.6175 -0.4508 46 1 1.8238 6.2145 3.2996 47 1 0.2715 5.7405 2.5880 48 1 2.8805 4.2051 2.6500 49 1 1.2764 3.6915 3.1985 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226538511.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:02 Heat of formation + Delta-G solvation = -41.689625 kcal Electronic energy + Delta-G solvation = -22277.309270 eV Core-core repulsion = 19430.463982 eV Total energy + Delta-G solvation = -2846.845288 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.42206 -36.52951 -34.49154 -32.62877 -31.69242 -30.79229 -28.63409 -27.29398 -25.88540 -24.59266 -23.33900 -22.12846 -20.68665 -19.94894 -19.31165 -18.50840 -16.58903 -15.65417 -14.88803 -14.67767 -14.51105 -14.11641 -13.88365 -13.56997 -13.21373 -13.14279 -12.75010 -12.63588 -12.21043 -12.11541 -11.83231 -11.66186 -11.43963 -11.30257 -11.27608 -11.12518 -10.92157 -10.74135 -10.66283 -10.44951 -10.26246 -10.17872 -9.99657 -9.90477 -9.73277 -9.68019 -9.50711 -9.32704 -8.93740 -8.34059 -7.15725 -5.96171 -4.08825 3.26464 3.35145 3.38204 4.41453 4.73339 4.81543 4.93847 5.08349 5.21678 5.29965 5.43480 5.47733 5.60453 5.62802 5.66051 5.71117 5.78617 5.83298 5.87366 5.94329 5.96217 6.11720 6.14440 6.24676 6.28676 6.38015 6.38854 6.43520 6.49765 6.53469 6.54411 6.59592 6.62497 6.74193 6.78348 6.83860 6.93141 7.09271 7.20090 7.23551 7.52238 7.66229 7.82260 8.14925 8.23931 8.42058 8.76528 9.05900 9.58675 11.03507 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.016854 B = 0.005902 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.928976 B = 4743.092537 C = 5579.173311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C 0.216 3.784 4 H 0.033 0.967 5 C -0.541 4.541 6 H 0.052 0.948 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.689 5.689 14 C 0.095 3.905 15 H 0.044 0.956 16 C -0.099 4.099 17 C -0.122 4.122 18 C -0.110 4.110 19 C -0.082 4.082 20 H 0.075 0.925 21 C -0.090 4.090 22 C -0.150 4.150 23 C -0.150 4.150 24 C -0.111 4.111 25 C -0.116 4.116 26 H 0.023 0.977 27 H 0.047 0.953 28 H 0.036 0.964 29 H 0.088 0.912 30 H 0.029 0.971 31 H 0.260 0.740 32 H 0.324 0.676 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.058 0.942 43 H 0.048 0.952 44 H 0.054 0.946 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.056 0.944 48 H 0.051 0.949 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.691 12.746 6.388 15.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.051 0.949 5 C -0.580 4.580 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.713 3.287 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.318 5.318 14 C -0.015 4.015 15 H 0.062 0.938 16 C -0.137 4.137 17 C -0.159 4.159 18 C -0.147 4.147 19 C -0.100 4.100 20 H 0.094 0.906 21 C -0.108 4.108 22 C -0.207 4.207 23 C -0.207 4.207 24 C -0.149 4.149 25 C -0.155 4.155 26 H 0.042 0.958 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.107 0.893 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.140 0.860 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.070 0.930 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.349 12.551 6.087 14.939 hybrid contribution 2.124 0.112 -0.238 2.140 sum -3.225 12.663 5.849 14.317 Atomic orbital electron populations 1.21688 0.99058 0.98136 1.00344 1.21499 0.92035 0.99464 1.01528 1.19155 0.92364 0.90946 0.86790 0.94879 1.21922 0.92880 1.37478 1.05741 0.92992 1.24924 0.97766 0.95131 0.95713 1.69890 1.34683 1.38207 1.09596 0.86654 0.86422 0.77719 0.77879 1.19976 1.20982 1.21107 1.61111 1.56047 1.05518 1.09116 1.21134 0.96282 0.89363 0.94728 0.93758 1.21336 0.97564 0.96935 0.97889 1.20485 1.01777 0.95140 0.98542 1.20607 0.97605 0.97992 0.98519 1.20984 0.98717 0.94100 0.96220 0.90641 1.21124 0.97916 0.95894 0.95886 1.21925 0.98255 1.00976 0.99571 1.21925 1.01768 0.99406 0.97609 1.21429 1.00852 0.95264 0.97353 1.22069 1.00391 0.94746 0.98246 0.95822 0.93437 0.94520 0.89330 0.95247 0.93028 0.85996 0.91202 0.92801 0.93023 0.92057 0.92837 0.92403 0.91700 0.92638 0.93256 0.92278 0.93294 0.92644 0.92279 0.92256 0.92534 0.93044 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.73 37.16 0.36 -2.44 16 2 C -0.11 -2.57 5.44 -26.73 -0.15 -2.72 16 3 C 0.22 5.28 1.61 -68.86 -0.11 5.17 16 4 H 0.03 0.91 7.30 -51.93 -0.38 0.53 16 5 C -0.54 -14.55 8.22 -34.44 -0.28 -14.84 16 6 H 0.05 1.40 7.75 -52.49 -0.41 1.00 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.89 -25.10 11.30 55.43 0.63 -24.47 16 9 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.69 -14.29 5.43 -101.71 -0.55 -14.85 16 14 C 0.10 1.74 1.85 -68.43 -0.13 1.61 16 15 H 0.04 0.94 6.05 -51.93 -0.31 0.63 16 16 C -0.10 -1.67 5.06 -27.35 -0.14 -1.81 16 17 C -0.12 -1.84 5.26 -29.60 -0.16 -2.00 16 18 C -0.11 -1.40 4.63 -29.59 -0.14 -1.54 16 19 C -0.08 -1.04 1.44 -91.23 -0.13 -1.17 16 20 H 0.08 1.14 6.98 -51.93 -0.36 0.77 16 21 C -0.09 -0.97 2.47 -90.62 -0.22 -1.20 16 22 C -0.15 -1.56 8.94 37.16 0.33 -1.23 16 23 C -0.15 -1.55 8.91 37.15 0.33 -1.22 16 24 C -0.11 -1.43 4.75 -27.44 -0.13 -1.56 16 25 C -0.12 -1.78 5.07 -25.62 -0.13 -1.91 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.94 7.87 -51.93 -0.41 0.54 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.09 2.39 5.98 -51.93 -0.31 2.08 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.32 6.75 8.01 -39.29 -0.31 6.43 16 33 H 0.07 1.34 7.35 -51.93 -0.38 0.95 16 34 H 0.05 0.84 6.98 -51.92 -0.36 0.48 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 1.05 7.47 -51.93 -0.39 0.66 16 37 H 0.05 0.65 7.47 -51.93 -0.39 0.26 16 38 H 0.06 0.68 5.63 -51.93 -0.29 0.39 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.60 6.06 -51.93 -0.31 0.29 16 43 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.60 6.06 -51.93 -0.31 0.28 16 46 H 0.06 0.69 5.52 -51.93 -0.29 0.41 16 47 H 0.06 0.71 6.63 -51.93 -0.34 0.37 16 48 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 LS Contribution 353.21 15.07 5.32 5.32 Total: -1.00 -26.81 353.21 -9.76 -36.57 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -9.35 Total: 6.30 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: -0.78 Total: -25.11 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.07 Total: -39.32 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -26.81 -9.76 -36.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226538511.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.122 kcal (2) G-P(sol) polarization free energy of solvation -26.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds