Wall clock time and date at job start Mon Mar 30 2020 07:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46694 * 2 1 4 4 H 1.08992 * 109.47358 * 303.91965 * 3 2 1 5 5 C 1.50706 * 109.46968 * 183.92482 * 3 2 1 6 6 H 1.08002 * 119.99728 * 240.00420 * 5 3 2 7 7 C 1.37878 * 120.00151 * 59.99735 * 5 3 2 8 8 N 1.31518 * 119.99988 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00197 * 180.02562 * 7 5 3 10 10 H 1.48509 * 109.47018 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47544 * 120.00099 * 9 7 5 12 12 H 1.48501 * 109.46919 * 240.00392 * 9 7 5 13 13 N 1.46897 * 109.47277 * 63.92607 * 3 2 1 14 14 C 1.46898 * 111.00090 * 204.43684 * 13 3 2 15 15 H 1.09002 * 108.85132 * 325.66424 * 14 13 3 16 16 C 1.50464 * 108.80051 * 84.17754 * 14 13 3 17 17 C 1.54241 * 108.52659 * 214.87769 * 16 14 13 18 18 C 1.45548 * 112.40040 * 280.01235 * 17 16 14 19 19 C 1.54242 * 112.40518 * 61.93798 * 18 17 16 20 20 H 1.09002 * 109.63022 * 39.71556 * 19 18 17 21 21 C 1.53000 * 109.62714 * 160.10335 * 19 18 17 22 22 C 1.53001 * 109.46903 * 179.97438 * 21 19 18 23 23 C 1.52995 * 109.46898 * 299.99668 * 21 19 18 24 24 C 1.50478 * 108.51926 * 280.00806 * 19 18 17 25 25 C 1.54063 * 108.87705 * 207.11063 * 14 13 3 26 26 H 1.08998 * 109.46702 * 174.94797 * 1 2 3 27 27 H 1.09000 * 109.47024 * 294.94706 * 1 2 3 28 28 H 1.09000 * 109.46968 * 54.94854 * 1 2 3 29 29 H 1.09001 * 109.46924 * 240.00448 * 2 1 3 30 30 H 1.08995 * 109.47281 * 119.99873 * 2 1 3 31 31 H 0.96995 * 119.99992 * 179.97438 * 8 7 5 32 32 H 1.00906 * 111.00007 * 80.47720 * 13 3 2 33 33 H 1.09004 * 109.63012 * 334.58915 * 16 14 13 34 34 H 1.09008 * 109.63014 * 95.16276 * 16 14 13 35 35 H 1.08998 * 108.89599 * 159.26119 * 17 16 14 36 36 H 1.08992 * 108.89315 * 40.76038 * 17 16 14 37 37 H 1.08996 * 108.89540 * 301.17820 * 18 17 16 38 38 H 1.09003 * 108.89040 * 182.68304 * 18 17 16 39 39 H 1.08999 * 109.47178 * 59.99685 * 21 19 18 40 40 H 1.08999 * 109.47145 * 60.00051 * 22 21 19 41 41 H 1.09000 * 109.46832 * 179.97438 * 22 21 19 42 42 H 1.08996 * 109.47435 * 299.99845 * 22 21 19 43 43 H 1.09008 * 109.47211 * 179.97438 * 23 21 19 44 44 H 1.08999 * 109.47219 * 299.99991 * 23 21 19 45 45 H 1.09000 * 109.47230 * 60.00654 * 23 21 19 46 46 H 1.09005 * 108.87476 * 214.92902 * 24 19 18 47 47 H 1.09001 * 108.87564 * 333.37306 * 24 19 18 48 48 H 1.09003 * 108.82090 * 76.74422 * 25 14 13 49 49 H 1.09005 * 108.81717 * 318.46355 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6204 1.9762 -0.8527 5 6 3.5439 1.4437 -0.0973 6 1 4.1353 1.8932 0.6867 7 6 4.1647 0.8709 -1.1870 8 7 3.4445 0.3240 -2.1418 9 14 6.0288 0.8718 -1.3072 10 1 6.6015 1.5446 -0.1135 11 1 6.5214 -0.5276 -1.3712 12 1 6.4454 1.5998 -2.5326 13 7 1.6292 2.1071 1.2440 14 6 1.5663 3.5640 1.0666 15 1 2.3499 3.8684 0.3727 16 6 0.2288 3.9236 0.4788 17 6 0.4187 5.1200 -0.4760 18 6 0.4993 6.3884 0.2334 19 6 1.7065 6.4505 1.1915 20 1 2.5708 5.9803 0.7224 21 6 2.0293 7.9101 1.5174 22 6 3.2266 7.9675 2.4682 23 6 2.3665 8.6584 0.2262 24 6 1.3529 5.7126 2.4543 25 6 1.8142 4.2429 2.4272 26 1 -0.3633 -1.0237 -0.0905 27 1 -0.3633 0.4334 0.9318 28 1 -0.3633 0.5902 -0.8413 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.8812 -0.0786 -2.9086 32 1 2.2444 1.8617 2.0053 33 1 -0.1686 3.0729 -0.0749 34 1 -0.4603 4.1983 1.2775 35 1 -0.4221 5.1558 -1.1687 36 1 1.3368 4.9750 -1.0451 37 1 -0.4156 6.5298 0.8087 38 1 0.5846 7.1951 -0.4946 39 1 1.1659 8.3759 1.9924 40 1 4.0902 7.5016 1.9936 41 1 3.4569 9.0074 2.7001 42 1 2.9861 7.4345 3.3881 43 1 2.5960 9.6984 0.4584 44 1 3.2299 8.1926 -0.2488 45 1 1.5132 8.6175 -0.4508 46 1 1.8238 6.2145 3.2996 47 1 0.2715 5.7405 2.5880 48 1 2.8805 4.2051 2.6500 49 1 1.2764 3.6915 3.1985 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226538511.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:01 Heat of formation + Delta-G solvation = -54.632348 kcal Electronic energy + Delta-G solvation = -22277.870509 eV Core-core repulsion = 19430.463982 eV Total energy + Delta-G solvation = -2847.406527 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.62441 -38.07799 -35.93932 -34.18915 -33.39829 -32.21505 -30.11623 -28.30781 -27.66127 -25.78109 -25.00106 -23.70164 -21.75126 -21.36820 -20.94545 -19.79145 -18.64706 -16.94026 -16.79046 -15.82574 -15.78847 -15.48931 -15.24101 -14.92332 -14.74035 -14.52568 -14.26383 -13.98317 -13.45268 -13.37936 -13.17749 -13.12683 -13.00179 -12.81441 -12.72066 -12.53143 -12.45630 -12.22484 -12.12669 -11.76322 -11.71771 -11.54035 -11.47204 -11.33342 -11.20544 -11.12808 -10.91047 -10.79761 -10.68368 -10.45954 -8.99764 -8.05568 -6.27831 1.33175 1.35843 1.45635 2.37766 3.13156 3.61197 3.69694 3.85043 4.03524 4.16274 4.21549 4.33463 4.45167 4.47535 4.58090 4.61405 4.67501 4.74777 4.76579 4.80798 4.85106 4.85563 4.93385 4.98965 5.04417 5.11802 5.14260 5.17888 5.23693 5.26214 5.30340 5.35500 5.38361 5.39700 5.46394 5.49573 5.51540 5.59583 5.62814 5.66251 5.71605 5.74974 5.80617 6.13752 6.23639 6.44768 6.89539 7.06454 7.43634 8.90352 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.016854 B = 0.005902 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.928976 B = 4743.092537 C = 5579.173311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.104 4.104 3 C 0.227 3.773 4 H -0.002 1.002 5 C -0.555 4.555 6 H 0.045 0.955 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.946 3.054 10 H -0.272 1.272 11 H -0.278 1.278 12 H -0.282 1.282 13 N -0.680 5.680 14 C 0.099 3.901 15 H 0.006 0.994 16 C -0.094 4.094 17 C -0.114 4.114 18 C -0.108 4.108 19 C -0.080 4.080 20 H 0.043 0.957 21 C -0.085 4.085 22 C -0.150 4.150 23 C -0.150 4.150 24 C -0.106 4.106 25 C -0.110 4.110 26 H 0.043 0.957 27 H 0.058 0.942 28 H 0.029 0.971 29 H 0.058 0.942 30 H 0.026 0.974 31 H 0.261 0.739 32 H 0.324 0.676 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.029 0.971 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.039 0.961 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.039 0.961 45 H 0.061 0.939 46 H 0.077 0.923 47 H 0.069 0.931 48 H 0.041 0.959 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.368 14.344 7.925 17.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.142 4.142 3 C 0.118 3.882 4 H 0.016 0.984 5 C -0.594 4.594 6 H 0.063 0.937 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.772 3.228 10 H -0.196 1.196 11 H -0.203 1.203 12 H -0.208 1.208 13 N -0.308 5.308 14 C -0.011 4.011 15 H 0.024 0.976 16 C -0.132 4.132 17 C -0.152 4.152 18 C -0.145 4.145 19 C -0.099 4.099 20 H 0.061 0.939 21 C -0.103 4.103 22 C -0.207 4.207 23 C -0.207 4.207 24 C -0.143 4.143 25 C -0.148 4.148 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.140 0.860 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.048 0.952 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.058 0.942 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.058 0.942 45 H 0.080 0.920 46 H 0.096 0.904 47 H 0.088 0.912 48 H 0.060 0.940 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.029 14.155 7.634 17.175 hybrid contribution 2.338 -0.390 -0.738 2.483 sum -3.691 13.765 6.895 15.832 Atomic orbital electron populations 1.21531 0.96342 0.99395 1.00586 1.21369 0.94448 0.98575 0.99843 1.18868 0.91019 0.91195 0.87132 0.98397 1.22201 0.94268 1.37271 1.05676 0.93684 1.25640 1.01953 0.94927 0.95489 1.70015 1.36260 1.38751 1.09991 0.85697 0.81421 0.77856 0.77810 1.19617 1.20320 1.20839 1.61087 1.55297 1.07059 1.07399 1.21176 0.95978 0.87932 0.95983 0.97565 1.21266 0.96784 0.96729 0.98407 1.20429 1.00574 0.95867 0.98350 1.20581 0.98381 0.96650 0.98875 1.20941 0.97460 0.95471 0.95982 0.93854 1.21098 0.98686 0.94302 0.96247 1.21925 0.97492 1.01883 0.99392 1.21926 1.01263 1.00115 0.97413 1.21408 1.01692 0.93227 0.98005 1.21999 1.00096 0.96601 0.96063 0.93827 0.92326 0.95229 0.92313 0.95476 0.92960 0.86003 0.93870 0.90669 0.92041 0.95190 0.90938 0.91192 0.90001 0.94197 0.91718 0.91897 0.91751 0.94187 0.91989 0.90441 0.91241 0.93979 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.01 9.73 71.98 0.70 -4.31 16 2 C -0.10 -5.11 5.44 30.60 0.17 -4.94 16 3 C 0.23 11.55 1.61 44.17 0.07 11.62 16 4 H 0.00 -0.11 7.30 -2.39 -0.02 -0.13 16 5 C -0.55 -30.85 8.22 25.60 0.21 -30.64 16 6 H 0.04 2.50 7.75 -2.91 -0.02 2.48 16 7 C 0.02 1.10 5.29 84.65 0.45 1.55 16 8 N -0.91 -53.16 11.30 21.45 0.24 -52.91 16 9 Si 0.95 44.42 29.54 68.60 2.03 46.45 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 13 N -0.68 -28.80 5.43 -475.69 -2.58 -31.38 16 14 C 0.10 3.71 1.85 44.45 0.08 3.79 16 15 H 0.01 0.28 6.05 -2.39 -0.01 0.27 16 16 C -0.09 -3.17 5.06 30.19 0.15 -3.02 16 17 C -0.11 -3.47 5.26 28.74 0.15 -3.32 16 18 C -0.11 -2.57 4.63 28.74 0.13 -2.43 16 19 C -0.08 -1.94 1.44 -11.19 -0.02 -1.95 16 20 H 0.04 1.34 6.98 -2.39 -0.02 1.32 16 21 C -0.08 -1.64 2.47 -10.79 -0.03 -1.67 16 22 C -0.15 -2.81 8.94 71.98 0.64 -2.17 16 23 C -0.15 -2.84 8.91 71.98 0.64 -2.20 16 24 C -0.11 -2.47 4.75 30.14 0.14 -2.33 16 25 C -0.11 -3.27 5.07 31.31 0.16 -3.11 16 26 H 0.04 1.60 8.14 -2.39 -0.02 1.59 16 27 H 0.06 2.27 7.87 -2.39 -0.02 2.25 16 28 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.06 3.26 5.98 -2.39 -0.01 3.25 16 30 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 32 H 0.32 13.67 8.01 -89.69 -0.72 12.95 16 33 H 0.04 1.68 7.35 -2.38 -0.02 1.66 16 34 H 0.07 2.21 6.98 -2.38 -0.02 2.19 16 35 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.03 1.08 7.47 -2.39 -0.02 1.06 16 37 H 0.07 1.50 7.47 -2.39 -0.02 1.49 16 38 H 0.07 1.52 5.63 -2.39 -0.01 1.51 16 39 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 40 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.06 1.12 6.06 -2.39 -0.01 1.11 16 43 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 44 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.06 1.13 6.06 -2.39 -0.01 1.11 16 46 H 0.08 1.57 5.52 -2.38 -0.01 1.56 16 47 H 0.07 1.49 6.63 -2.39 -0.02 1.47 16 48 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.07 1.96 8.12 -2.38 -0.02 1.94 16 Total: -1.00 -59.34 353.21 3.52 -55.82 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 0.17 Total: 27.15 kcal Atomic # 6 Polarization: -48.78 SS G_CDS: 3.66 Total: -45.12 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -2.34 Total: -84.29 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -59.34 3.52 -55.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226538511.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.187 kcal (2) G-P(sol) polarization free energy of solvation -59.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds