Wall clock time and date at job start Mon Mar 30 2020 07:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47234 * 2 1 4 4 H 1.09002 * 109.46682 * 54.46944 * 3 2 1 5 5 C 1.50697 * 109.46935 * 174.46705 * 3 2 1 6 6 H 1.07997 * 119.99596 * 120.00541 * 5 3 2 7 7 C 1.37880 * 120.00510 * 299.72320 * 5 3 2 8 8 N 1.31515 * 119.99372 * 0.27762 * 7 5 3 9 9 Si 1.86795 * 120.00240 * 180.27831 * 7 5 3 10 10 H 1.48506 * 109.47262 * 90.00083 * 9 7 5 11 11 H 1.48503 * 109.47139 * 209.99647 * 9 7 5 12 12 H 1.48500 * 109.47151 * 330.00094 * 9 7 5 13 13 N 1.46896 * 109.46762 * 294.46803 * 3 2 1 14 14 C 1.46905 * 110.99833 * 153.38737 * 13 3 2 15 15 H 1.09000 * 109.46806 * 36.49220 * 14 13 3 16 16 C 1.53003 * 109.46950 * 276.49263 * 14 13 3 17 17 C 1.52998 * 109.47137 * 300.00066 * 16 14 13 18 18 H 1.08995 * 109.47068 * 60.00046 * 17 16 14 19 19 C 1.53003 * 109.47137 * 180.02562 * 17 16 14 20 20 C 1.52998 * 109.47142 * 299.99852 * 17 16 14 21 21 C 1.53003 * 109.46984 * 60.00054 * 20 17 16 22 22 C 1.52998 * 109.47137 * 299.99949 * 21 20 17 23 23 H 1.08999 * 109.47322 * 300.00388 * 22 21 20 24 24 C 1.53003 * 109.47137 * 179.97438 * 22 21 20 25 25 C 1.52998 * 109.46984 * 60.00051 * 24 22 21 26 26 C 1.53001 * 109.47310 * 180.02562 * 24 22 21 27 27 H 1.09008 * 109.46759 * 65.92797 * 1 2 3 28 28 H 1.08996 * 109.47044 * 185.92238 * 1 2 3 29 29 H 1.08998 * 109.47029 * 305.92684 * 1 2 3 30 30 H 1.08995 * 109.47815 * 240.00004 * 2 1 3 31 31 H 1.09010 * 109.46825 * 119.99625 * 2 1 3 32 32 H 0.97004 * 119.99623 * 180.02562 * 8 7 5 33 33 H 1.00897 * 111.00001 * 29.43384 * 13 3 2 34 34 H 1.08999 * 109.46887 * 60.00034 * 16 14 13 35 35 H 1.08999 * 109.47332 * 179.97438 * 16 14 13 36 36 H 1.08997 * 109.47088 * 180.02562 * 19 17 16 37 37 H 1.08999 * 109.46887 * 299.99968 * 19 17 16 38 38 H 1.08995 * 109.47104 * 60.00069 * 19 17 16 39 39 H 1.09000 * 109.47421 * 300.00525 * 20 17 16 40 40 H 1.08997 * 109.47142 * 179.97438 * 20 17 16 41 41 H 1.08999 * 109.46887 * 179.97438 * 21 20 17 42 42 H 1.08995 * 109.47104 * 59.99880 * 21 20 17 43 43 H 1.09000 * 109.46657 * 300.00054 * 24 22 21 44 44 H 1.08997 * 109.46730 * 179.97438 * 25 24 22 45 45 H 1.08997 * 109.47142 * 299.99886 * 25 24 22 46 46 H 1.08999 * 109.46815 * 60.00015 * 25 24 22 47 47 H 1.09004 * 109.47019 * 59.99182 * 26 24 22 48 48 H 1.08992 * 109.47361 * 180.02562 * 26 24 22 49 49 H 1.09007 * 109.46641 * 300.00271 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5980 1.9841 0.8364 5 6 3.5408 1.4447 0.1370 6 1 4.1528 1.8869 -0.6352 7 6 4.1322 0.8873 1.2508 8 7 3.3869 0.3489 2.1911 9 14 5.9921 0.8969 1.4242 10 1 6.4176 2.1354 2.1245 11 1 6.4222 -0.2881 2.2091 12 1 6.6151 0.8511 0.0770 13 7 1.6624 2.0953 -1.2606 14 6 1.5448 3.5492 -1.0859 15 1 2.3084 3.8943 -0.3889 16 6 0.1589 3.8859 -0.5319 17 6 -0.9129 3.4014 -1.5103 18 1 -0.8257 2.3227 -1.6399 19 6 -2.2988 3.7386 -0.9566 20 6 -0.7214 4.0945 -2.8608 21 6 0.6645 3.7578 -3.4148 22 6 1.7363 4.2423 -2.4364 23 1 1.6490 5.3210 -2.3067 24 6 3.1222 3.9051 -2.9901 25 6 3.3141 4.5977 -4.3408 26 6 4.1941 4.3890 -2.0114 27 1 -0.3633 0.4192 -0.9384 28 1 -0.3633 -1.0221 0.1060 29 1 -0.3633 0.6030 0.8322 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8029 -0.0430 2.9748 33 1 0.8076 1.7050 -1.6280 34 1 0.0225 3.3921 0.4302 35 1 0.0718 4.9646 -0.4019 36 1 -3.0624 3.3931 -1.6535 37 1 -2.4355 3.2452 0.0056 38 1 -2.3858 4.8174 -0.8274 39 1 -0.8086 5.1732 -2.7312 40 1 -1.4847 3.7490 -3.5580 41 1 0.8007 4.2512 -4.3772 42 1 0.7518 2.6791 -3.5444 43 1 3.2091 2.8263 -3.1193 44 1 4.3016 4.3578 -4.7350 45 1 2.5505 4.2525 -5.0378 46 1 3.2271 5.6765 -4.2115 47 1 4.0571 3.8953 -1.0493 48 1 5.1813 4.1492 -2.4061 49 1 4.1072 5.4678 -1.8817 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226861984.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:14 Heat of formation + Delta-G solvation = -43.672328 kcal Electronic energy + Delta-G solvation = -23008.205636 eV Core-core repulsion = 20161.274371 eV Total energy + Delta-G solvation = -2846.931265 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.54093 -35.49347 -35.15831 -32.22499 -31.16494 -30.65270 -28.17533 -26.70413 -25.95073 -25.76647 -22.79832 -21.82548 -21.42602 -19.72761 -19.13722 -18.34416 -16.20531 -15.33661 -14.98629 -14.68180 -14.16099 -13.82821 -13.69912 -13.49145 -13.10815 -12.87755 -12.66010 -12.52275 -12.16453 -12.06209 -11.73226 -11.68808 -11.63668 -11.41939 -11.10690 -10.89416 -10.76561 -10.66520 -10.62442 -10.59879 -10.44657 -10.11272 -9.94093 -9.80533 -9.65111 -9.59222 -9.45437 -9.11283 -8.92365 -8.28463 -7.02328 -5.90280 -3.93214 3.34815 3.41957 3.46305 4.49662 4.99227 5.00972 5.11037 5.36312 5.39239 5.42966 5.52415 5.55447 5.64179 5.82881 5.84523 5.90377 5.93724 5.99637 6.01822 6.12580 6.14459 6.17649 6.20579 6.22487 6.27694 6.32979 6.35847 6.37960 6.43599 6.49783 6.55788 6.59749 6.71229 6.79745 6.83468 6.90498 6.91646 7.12714 7.18319 7.21230 7.28549 7.62166 7.85577 8.02436 8.44969 8.51118 8.89676 9.16448 9.71622 11.14917 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.015995 B = 0.007956 C = 0.005878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.169869 B = 3518.567459 C = 4762.137465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C 0.220 3.780 4 H 0.001 0.999 5 C -0.487 4.487 6 H 0.066 0.934 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.274 1.274 13 N -0.675 5.675 14 C 0.097 3.903 15 H 0.083 0.917 16 C -0.143 4.143 17 C -0.093 4.093 18 H 0.071 0.929 19 C -0.144 4.144 20 C -0.110 4.110 21 C -0.114 4.114 22 C -0.064 4.064 23 H 0.054 0.946 24 C -0.080 4.080 25 C -0.148 4.148 26 C -0.150 4.150 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.041 0.959 30 H 0.039 0.961 31 H 0.097 0.903 32 H 0.257 0.743 33 H 0.317 0.683 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.068 0.932 43 H 0.089 0.911 44 H 0.045 0.955 45 H 0.050 0.950 46 H 0.043 0.957 47 H 0.080 0.920 48 H 0.041 0.959 49 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.031 7.043 -8.673 13.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C 0.112 3.888 4 H 0.019 0.981 5 C -0.525 4.525 6 H 0.084 0.916 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.199 1.199 13 N -0.307 5.307 14 C -0.014 4.014 15 H 0.101 0.899 16 C -0.183 4.183 17 C -0.112 4.112 18 H 0.089 0.911 19 C -0.202 4.202 20 C -0.148 4.148 21 C -0.152 4.152 22 C -0.083 4.083 23 H 0.072 0.928 24 C -0.098 4.098 25 C -0.205 4.205 26 C -0.207 4.207 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.115 0.885 32 H 0.067 0.933 33 H 0.136 0.864 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.064 0.936 45 H 0.069 0.931 46 H 0.062 0.938 47 H 0.098 0.902 48 H 0.060 0.940 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.350 6.965 -8.730 12.847 hybrid contribution 0.119 0.046 0.797 0.807 sum -6.230 7.011 -7.933 12.285 Atomic orbital electron populations 1.21898 0.99783 0.99476 0.99426 1.21777 0.91052 1.00800 1.02852 1.19129 0.95171 0.89615 0.84850 0.98110 1.21302 0.91446 1.35919 1.03880 0.91625 1.24951 0.97655 0.95934 0.96083 1.69879 1.34475 1.39930 1.09492 0.86648 0.86408 0.77241 0.77995 1.21026 1.21566 1.19933 1.60807 1.36848 1.01352 1.31687 1.21495 0.94273 0.90473 0.95164 0.89904 1.22267 0.96822 1.00431 0.98732 1.21140 0.94472 1.00433 0.95153 0.91064 1.21811 0.96697 1.01014 1.00641 1.21573 0.97244 0.99860 0.96111 1.21600 0.93783 1.01877 0.97892 1.21116 0.94170 0.97887 0.95159 0.92774 1.20953 0.93953 1.01695 0.93218 1.21941 1.00630 0.99851 0.98077 1.21929 0.97709 0.99560 1.01535 0.94688 0.94648 0.93979 0.94263 0.88456 0.93296 0.86359 0.92103 0.92793 0.93256 0.92931 0.93165 0.92706 0.92890 0.92735 0.91286 0.89315 0.93575 0.93088 0.93776 0.90169 0.93955 0.94469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.64 37.16 0.36 -2.49 16 2 C -0.13 -2.91 5.35 -26.73 -0.14 -3.06 16 3 C 0.22 5.19 1.82 -68.86 -0.13 5.07 16 4 H 0.00 0.03 7.00 -51.93 -0.36 -0.33 16 5 C -0.49 -12.82 8.40 -34.44 -0.29 -13.11 16 6 H 0.07 1.75 6.58 -52.49 -0.35 1.40 16 7 C 0.05 1.46 5.29 -17.82 -0.09 1.36 16 8 N -0.90 -25.26 11.30 55.43 0.63 -24.63 16 9 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 13 N -0.67 -13.22 4.83 -100.95 -0.49 -13.71 16 14 C 0.10 1.71 1.77 -67.71 -0.12 1.59 16 15 H 0.08 1.69 6.00 -51.93 -0.31 1.38 16 16 C -0.14 -2.29 4.77 -26.73 -0.13 -2.42 16 17 C -0.09 -1.29 2.47 -90.62 -0.22 -1.52 16 18 H 0.07 1.08 5.28 -51.93 -0.27 0.80 16 19 C -0.14 -1.77 9.19 37.16 0.34 -1.42 16 20 C -0.11 -1.39 5.20 -26.73 -0.14 -1.53 16 21 C -0.11 -1.55 4.61 -26.73 -0.12 -1.67 16 22 C -0.06 -0.97 1.60 -90.62 -0.14 -1.12 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 24 C -0.08 -1.25 2.35 -90.62 -0.21 -1.47 16 25 C -0.15 -1.95 8.84 37.16 0.33 -1.62 16 26 C -0.15 -2.52 8.84 37.16 0.33 -2.19 16 27 H 0.03 0.60 5.68 -51.92 -0.30 0.31 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.10 2.55 5.95 -51.92 -0.31 2.25 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.32 5.86 3.53 -39.29 -0.14 5.72 16 34 H 0.06 1.09 7.34 -51.93 -0.38 0.71 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.68 6.43 -51.93 -0.33 0.34 16 42 H 0.07 1.02 7.17 -51.93 -0.37 0.65 16 43 H 0.09 1.61 7.60 -51.93 -0.39 1.22 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.05 0.63 6.43 -51.93 -0.33 0.29 16 46 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.08 1.58 5.00 -51.93 -0.26 1.32 16 48 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.04 0.56 8.14 -51.92 -0.42 0.14 16 LS Contribution 349.42 15.07 5.27 5.27 Total: -1.00 -26.10 349.42 -9.17 -35.27 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -9.17 Total: 7.05 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: -0.39 Total: -25.59 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.14 Total: -38.34 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -26.10 -9.17 -35.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226861984.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.402 kcal (2) G-P(sol) polarization free energy of solvation -26.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds