Wall clock time and date at job start Mon Mar 30 2020 07:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47234 * 2 1 4 4 H 1.09002 * 109.46682 * 54.46944 * 3 2 1 5 5 C 1.50697 * 109.46935 * 174.46705 * 3 2 1 6 6 H 1.07997 * 119.99596 * 120.00541 * 5 3 2 7 7 C 1.37880 * 120.00510 * 299.72320 * 5 3 2 8 8 N 1.31515 * 119.99372 * 0.27762 * 7 5 3 9 9 Si 1.86795 * 120.00240 * 180.27831 * 7 5 3 10 10 H 1.48506 * 109.47262 * 90.00083 * 9 7 5 11 11 H 1.48503 * 109.47139 * 209.99647 * 9 7 5 12 12 H 1.48500 * 109.47151 * 330.00094 * 9 7 5 13 13 N 1.46896 * 109.46762 * 294.46803 * 3 2 1 14 14 C 1.46905 * 110.99833 * 153.38737 * 13 3 2 15 15 H 1.09000 * 109.46806 * 36.49220 * 14 13 3 16 16 C 1.53003 * 109.46950 * 276.49263 * 14 13 3 17 17 C 1.52998 * 109.47137 * 300.00066 * 16 14 13 18 18 H 1.08995 * 109.47068 * 60.00046 * 17 16 14 19 19 C 1.53003 * 109.47137 * 180.02562 * 17 16 14 20 20 C 1.52998 * 109.47142 * 299.99852 * 17 16 14 21 21 C 1.53003 * 109.46984 * 60.00054 * 20 17 16 22 22 C 1.52998 * 109.47137 * 299.99949 * 21 20 17 23 23 H 1.08999 * 109.47322 * 300.00388 * 22 21 20 24 24 C 1.53003 * 109.47137 * 179.97438 * 22 21 20 25 25 C 1.52998 * 109.46984 * 60.00051 * 24 22 21 26 26 C 1.53001 * 109.47310 * 180.02562 * 24 22 21 27 27 H 1.09008 * 109.46759 * 65.92797 * 1 2 3 28 28 H 1.08996 * 109.47044 * 185.92238 * 1 2 3 29 29 H 1.08998 * 109.47029 * 305.92684 * 1 2 3 30 30 H 1.08995 * 109.47815 * 240.00004 * 2 1 3 31 31 H 1.09010 * 109.46825 * 119.99625 * 2 1 3 32 32 H 0.97004 * 119.99623 * 180.02562 * 8 7 5 33 33 H 1.00897 * 111.00001 * 29.43384 * 13 3 2 34 34 H 1.08999 * 109.46887 * 60.00034 * 16 14 13 35 35 H 1.08999 * 109.47332 * 179.97438 * 16 14 13 36 36 H 1.08997 * 109.47088 * 180.02562 * 19 17 16 37 37 H 1.08999 * 109.46887 * 299.99968 * 19 17 16 38 38 H 1.08995 * 109.47104 * 60.00069 * 19 17 16 39 39 H 1.09000 * 109.47421 * 300.00525 * 20 17 16 40 40 H 1.08997 * 109.47142 * 179.97438 * 20 17 16 41 41 H 1.08999 * 109.46887 * 179.97438 * 21 20 17 42 42 H 1.08995 * 109.47104 * 59.99880 * 21 20 17 43 43 H 1.09000 * 109.46657 * 300.00054 * 24 22 21 44 44 H 1.08997 * 109.46730 * 179.97438 * 25 24 22 45 45 H 1.08997 * 109.47142 * 299.99886 * 25 24 22 46 46 H 1.08999 * 109.46815 * 60.00015 * 25 24 22 47 47 H 1.09004 * 109.47019 * 59.99182 * 26 24 22 48 48 H 1.08992 * 109.47361 * 180.02562 * 26 24 22 49 49 H 1.09007 * 109.46641 * 300.00271 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5980 1.9841 0.8364 5 6 3.5408 1.4447 0.1370 6 1 4.1528 1.8869 -0.6352 7 6 4.1322 0.8873 1.2508 8 7 3.3869 0.3489 2.1911 9 14 5.9921 0.8969 1.4242 10 1 6.4176 2.1354 2.1245 11 1 6.4222 -0.2881 2.2091 12 1 6.6151 0.8511 0.0770 13 7 1.6624 2.0953 -1.2606 14 6 1.5448 3.5492 -1.0859 15 1 2.3084 3.8943 -0.3889 16 6 0.1589 3.8859 -0.5319 17 6 -0.9129 3.4014 -1.5103 18 1 -0.8257 2.3227 -1.6399 19 6 -2.2988 3.7386 -0.9566 20 6 -0.7214 4.0945 -2.8608 21 6 0.6645 3.7578 -3.4148 22 6 1.7363 4.2423 -2.4364 23 1 1.6490 5.3210 -2.3067 24 6 3.1222 3.9051 -2.9901 25 6 3.3141 4.5977 -4.3408 26 6 4.1941 4.3890 -2.0114 27 1 -0.3633 0.4192 -0.9384 28 1 -0.3633 -1.0221 0.1060 29 1 -0.3633 0.6030 0.8322 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8029 -0.0430 2.9748 33 1 0.8076 1.7050 -1.6280 34 1 0.0225 3.3921 0.4302 35 1 0.0718 4.9646 -0.4019 36 1 -3.0624 3.3931 -1.6535 37 1 -2.4355 3.2452 0.0056 38 1 -2.3858 4.8174 -0.8274 39 1 -0.8086 5.1732 -2.7312 40 1 -1.4847 3.7490 -3.5580 41 1 0.8007 4.2512 -4.3772 42 1 0.7518 2.6791 -3.5444 43 1 3.2091 2.8263 -3.1193 44 1 4.3016 4.3578 -4.7350 45 1 2.5505 4.2525 -5.0378 46 1 3.2271 5.6765 -4.2115 47 1 4.0571 3.8953 -1.0493 48 1 5.1813 4.1492 -2.4061 49 1 4.1072 5.4678 -1.8817 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226861984.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:13 Heat of formation + Delta-G solvation = -55.709872 kcal Electronic energy + Delta-G solvation = -23008.727623 eV Core-core repulsion = 20161.274371 eV Total energy + Delta-G solvation = -2847.453252 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.86413 -37.20833 -36.37361 -34.10474 -32.80300 -31.79490 -29.74438 -28.05019 -27.65846 -26.92266 -24.65797 -23.01892 -22.65752 -21.49238 -20.44658 -19.70065 -18.23241 -16.84518 -16.43508 -16.32596 -15.75460 -15.27449 -14.91553 -14.76346 -14.55415 -14.31534 -14.24171 -13.82215 -13.54046 -13.33394 -13.13974 -13.05363 -12.92980 -12.82568 -12.73454 -12.63239 -12.53557 -12.12374 -11.95076 -11.82457 -11.79178 -11.66872 -11.49322 -11.41702 -11.18511 -11.11502 -10.85570 -10.69486 -10.44067 -10.36869 -8.72558 -7.99826 -6.09352 1.39308 1.41293 1.50897 2.46316 3.25143 3.74172 3.85977 3.94038 4.05797 4.21781 4.25006 4.38412 4.49063 4.53591 4.58612 4.64009 4.68332 4.73380 4.78447 4.82655 4.86212 4.89441 4.91819 4.98853 5.07093 5.09433 5.11180 5.16304 5.21967 5.24396 5.27445 5.31095 5.33064 5.42722 5.43530 5.52722 5.55154 5.60526 5.66248 5.71617 5.81068 5.85542 5.92290 6.00872 6.47679 6.70177 7.07932 7.19018 7.59365 9.02763 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.015995 B = 0.007956 C = 0.005878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.169869 B = 3518.567459 C = 4762.137465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.122 4.122 3 C 0.231 3.769 4 H -0.035 1.035 5 C -0.494 4.494 6 H 0.058 0.942 7 C 0.007 3.993 8 N -0.923 5.923 9 Si 0.944 3.056 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.271 1.271 13 N -0.668 5.668 14 C 0.097 3.903 15 H 0.046 0.954 16 C -0.138 4.138 17 C -0.090 4.090 18 H 0.057 0.943 19 C -0.140 4.140 20 C -0.104 4.104 21 C -0.110 4.110 22 C -0.057 4.057 23 H 0.066 0.934 24 C -0.078 4.078 25 C -0.140 4.140 26 C -0.147 4.147 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.032 0.968 30 H 0.034 0.966 31 H 0.064 0.936 32 H 0.256 0.744 33 H 0.325 0.675 34 H 0.030 0.970 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.041 0.959 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.047 0.953 45 H 0.064 0.936 46 H 0.056 0.944 47 H 0.042 0.958 48 H 0.042 0.958 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.170 8.308 -10.955 15.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.161 4.161 3 C 0.122 3.878 4 H -0.018 1.018 5 C -0.533 4.533 6 H 0.076 0.924 7 C -0.190 4.190 8 N -0.564 5.564 9 Si 0.771 3.229 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.196 1.196 13 N -0.301 5.301 14 C -0.014 4.014 15 H 0.064 0.936 16 C -0.177 4.177 17 C -0.109 4.109 18 H 0.076 0.924 19 C -0.198 4.198 20 C -0.142 4.142 21 C -0.147 4.147 22 C -0.076 4.076 23 H 0.085 0.915 24 C -0.097 4.097 25 C -0.197 4.197 26 C -0.204 4.204 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.146 0.854 34 H 0.049 0.951 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.496 8.239 -11.027 15.674 hybrid contribution 0.495 -0.315 1.526 1.635 sum -7.000 7.924 -9.501 14.215 Atomic orbital electron populations 1.21738 0.96589 1.00704 1.00215 1.21608 0.93929 0.99705 1.00868 1.18828 0.93618 0.89974 0.85337 1.01769 1.21583 0.93031 1.35140 1.03535 0.92432 1.25617 1.01377 0.96000 0.96051 1.70014 1.35790 1.40783 1.09840 0.85768 0.82061 0.77152 0.77906 1.20765 1.21309 1.19583 1.60709 1.37464 1.02572 1.29340 1.21471 0.94312 0.89204 0.96376 0.93595 1.22178 0.96631 1.00921 0.97956 1.21106 0.94558 0.99659 0.95545 0.92444 1.21772 0.95878 1.01650 1.00473 1.21547 0.96995 1.00416 0.95218 1.21569 0.93700 1.01151 0.98284 1.21057 0.94641 0.98134 0.93796 0.91545 1.20893 0.93908 1.00232 0.94627 1.21853 1.01294 1.00285 0.96252 1.21869 0.98328 1.00220 0.99985 0.92540 0.92810 0.94833 0.94745 0.91774 0.93517 0.85426 0.95092 0.91550 0.91428 0.93992 0.92159 0.91514 0.90834 0.90572 0.92650 0.92170 0.93372 0.91728 0.92446 0.93878 0.93921 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.16 9.64 71.98 0.69 -4.46 16 2 C -0.12 -5.82 5.35 30.60 0.16 -5.65 16 3 C 0.23 11.41 1.82 44.17 0.08 11.49 16 4 H -0.04 -1.98 7.00 -2.39 -0.02 -1.99 16 5 C -0.49 -27.17 8.40 25.60 0.22 -26.96 16 6 H 0.06 3.20 6.58 -2.91 -0.02 3.18 16 7 C 0.01 0.38 5.29 84.66 0.45 0.82 16 8 N -0.92 -53.96 11.30 21.45 0.24 -53.72 16 9 Si 0.94 45.08 29.54 68.60 2.03 47.11 16 10 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 12 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 13 N -0.67 -26.84 4.83 -473.29 -2.28 -29.13 16 14 C 0.10 3.48 1.77 44.91 0.08 3.56 16 15 H 0.05 1.98 6.00 -2.39 -0.01 1.97 16 16 C -0.14 -4.38 4.77 30.59 0.15 -4.24 16 17 C -0.09 -2.32 2.47 -10.79 -0.03 -2.35 16 18 H 0.06 1.64 5.28 -2.39 -0.01 1.63 16 19 C -0.14 -3.08 9.19 71.98 0.66 -2.42 16 20 C -0.10 -2.25 5.20 30.59 0.16 -2.09 16 21 C -0.11 -2.65 4.61 30.59 0.14 -2.51 16 22 C -0.06 -1.65 1.60 -10.79 -0.02 -1.67 16 23 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 24 C -0.08 -2.38 2.35 -10.79 -0.03 -2.41 16 25 C -0.14 -3.30 8.84 71.98 0.64 -2.67 16 26 C -0.15 -4.94 8.84 71.98 0.64 -4.30 16 27 H 0.06 1.89 5.68 -2.38 -0.01 1.88 16 28 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.06 3.50 5.95 -2.38 -0.01 3.49 16 32 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 33 H 0.33 12.03 3.53 -89.70 -0.32 11.71 16 34 H 0.03 1.15 7.34 -2.39 -0.02 1.13 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.08 1.56 6.43 -2.39 -0.02 1.55 16 42 H 0.05 1.51 7.17 -2.39 -0.02 1.49 16 43 H 0.06 2.19 7.60 -2.39 -0.02 2.17 16 44 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.06 1.36 6.43 -2.39 -0.02 1.34 16 46 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.04 1.76 5.00 -2.38 -0.01 1.75 16 48 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -58.89 349.42 4.55 -54.34 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: 0.58 Total: 27.25 kcal Atomic # 6 Polarization: -49.84 SS G_CDS: 3.99 Total: -45.85 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -2.04 Total: -82.85 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -58.89 4.55 -54.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226861984.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.369 kcal (2) G-P(sol) polarization free energy of solvation -58.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds