Wall clock time and date at job start Mon Mar 30 2020 07:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47411 * 2 1 4 4 H 1.09001 * 109.46996 * 307.42631 * 3 2 1 5 5 C 1.50700 * 109.47025 * 187.42846 * 3 2 1 6 6 H 1.08000 * 119.99737 * 240.00070 * 5 3 2 7 7 C 1.37873 * 120.00415 * 60.00210 * 5 3 2 8 8 N 1.31520 * 119.99786 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00406 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47304 * 59.99623 * 9 7 5 11 11 H 1.48501 * 109.47329 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46904 * 299.99922 * 9 7 5 13 13 N 1.46899 * 109.46579 * 67.43020 * 3 2 1 14 14 C 1.46904 * 110.99778 * 265.95140 * 13 3 2 15 15 H 1.09002 * 109.46966 * 59.14208 * 14 13 3 16 16 C 1.53002 * 109.47198 * 299.14255 * 14 13 3 17 17 C 1.52995 * 109.47318 * 300.00170 * 16 14 13 18 18 H 1.09000 * 109.47230 * 59.99447 * 17 16 14 19 19 C 1.53002 * 109.47318 * 179.97438 * 17 16 14 20 20 C 1.53004 * 109.46888 * 299.99953 * 17 16 14 21 21 C 1.53002 * 109.47103 * 59.99914 * 20 17 16 22 22 C 1.52995 * 109.47318 * 299.99822 * 21 20 17 23 23 H 1.09000 * 109.47230 * 300.00553 * 22 21 20 24 24 C 1.52996 * 109.47039 * 179.97438 * 22 21 20 25 25 C 1.52998 * 109.47220 * 53.50243 * 24 22 21 26 26 C 1.53009 * 109.47060 * 173.49991 * 24 22 21 27 27 H 1.09007 * 109.47516 * 58.84150 * 1 2 3 28 28 H 1.08999 * 109.47650 * 178.84175 * 1 2 3 29 29 H 1.09006 * 109.47308 * 298.84264 * 1 2 3 30 30 H 1.09008 * 109.47098 * 240.00288 * 2 1 3 31 31 H 1.09002 * 109.47407 * 120.00280 * 2 1 3 32 32 H 0.96998 * 120.00082 * 179.97438 * 8 7 5 33 33 H 1.00904 * 110.99804 * 142.00380 * 13 3 2 34 34 H 1.09001 * 109.46835 * 59.99992 * 16 14 13 35 35 H 1.08996 * 109.47075 * 180.02562 * 16 14 13 36 36 H 1.09008 * 109.46728 * 60.00014 * 19 17 16 37 37 H 1.09002 * 109.47124 * 179.97438 * 19 17 16 38 38 H 1.08993 * 109.47158 * 299.99964 * 19 17 16 39 39 H 1.09002 * 109.47241 * 179.97438 * 20 17 16 40 40 H 1.08996 * 109.47218 * 299.99925 * 20 17 16 41 41 H 1.09001 * 109.46682 * 60.00175 * 21 20 17 42 42 H 1.09001 * 109.46835 * 179.97438 * 21 20 17 43 43 H 1.08999 * 109.47520 * 293.49727 * 24 22 21 44 44 H 1.09004 * 109.46948 * 179.97438 * 25 24 22 45 45 H 1.08999 * 109.46830 * 299.99409 * 25 24 22 46 46 H 1.08999 * 109.47295 * 59.99347 * 25 24 22 47 47 H 1.09001 * 109.46892 * 78.78042 * 26 24 22 48 48 H 1.08998 * 109.46940 * 198.78906 * 26 24 22 49 49 H 1.09002 * 109.46817 * 318.78232 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5723 1.9932 -0.8161 5 6 3.5357 1.4464 -0.1837 6 1 4.1717 1.8801 0.5739 7 6 4.0924 0.8963 -1.3188 8 7 3.3180 0.3678 -2.2411 9 14 5.9465 0.9005 -1.5462 10 1 6.5832 0.1497 -0.4344 11 1 6.2881 0.2553 -2.8394 12 1 6.4420 2.3004 -1.5458 13 7 1.7020 2.0812 1.2790 14 6 0.4320 2.8132 1.1824 15 1 -0.3640 2.1240 0.9005 16 6 0.5551 3.9107 0.1234 17 6 1.6725 4.8781 0.5190 18 1 2.6148 4.3349 0.5907 19 6 1.7960 5.9752 -0.5403 20 6 1.3440 5.5104 1.8730 21 6 1.2209 4.4129 2.9319 22 6 0.1036 3.4455 2.5364 23 1 -0.8388 3.9887 2.4647 24 6 -0.0191 2.3478 3.5950 25 6 -0.1859 2.9866 4.9752 26 6 -1.2375 1.4753 3.2863 27 1 -0.3634 0.5317 -0.8794 28 1 -0.3634 -1.0274 -0.0208 29 1 -0.3634 0.4958 0.9002 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8900 32 1 3.7096 -0.0189 -3.0399 33 1 2.4466 2.6882 1.5879 34 1 0.7891 3.4602 -0.8411 35 1 -0.3870 4.4541 0.0521 36 1 0.8537 6.5184 -0.6123 37 1 2.5918 6.6646 -0.2582 38 1 2.0302 5.5244 -1.5046 39 1 2.1403 6.1992 2.1550 40 1 0.4017 6.0535 1.8013 41 1 2.1633 3.8698 3.0035 42 1 0.9874 4.8634 3.8966 43 1 0.8803 1.7320 3.5859 44 1 -0.2737 2.2044 5.7293 45 1 0.6822 3.6080 5.1952 46 1 -1.0852 3.6023 4.9843 47 1 -0.9895 0.7736 2.4899 48 1 -1.5250 0.9230 4.1809 49 1 -2.0661 2.1080 2.9680 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226861991.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:16 Heat of formation + Delta-G solvation = -37.951119 kcal Electronic energy + Delta-G solvation = -23038.732275 eV Core-core repulsion = 20192.049100 eV Total energy + Delta-G solvation = -2846.683175 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.65114 -35.51837 -35.11044 -32.29447 -30.94900 -30.47028 -28.65719 -26.81289 -25.93647 -25.65588 -22.82519 -21.89307 -21.29321 -19.67148 -19.21676 -18.16097 -16.63983 -15.27804 -14.96516 -14.63835 -14.23519 -14.00313 -13.69574 -13.45883 -13.02579 -12.92068 -12.50419 -12.32236 -12.23401 -11.94980 -11.90290 -11.76521 -11.55333 -11.33583 -11.08802 -11.05181 -10.82022 -10.70996 -10.64434 -10.57218 -10.44702 -10.13700 -10.01770 -9.83149 -9.68801 -9.50789 -9.47874 -9.05464 -8.68678 -8.33988 -7.02351 -5.98062 -4.04195 3.31663 3.36586 3.39274 4.42938 5.00753 5.04422 5.16872 5.31306 5.34076 5.40527 5.47138 5.56791 5.63483 5.78053 5.87570 5.91221 5.96154 5.96389 6.03479 6.07729 6.12108 6.17086 6.19629 6.23875 6.30811 6.33410 6.37275 6.40942 6.44651 6.56504 6.57309 6.61597 6.72398 6.76307 6.80874 6.89542 6.97895 7.03022 7.18624 7.32055 7.52966 7.69032 7.82646 8.04720 8.38533 8.52081 8.80721 9.09933 9.61220 11.06786 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.016866 B = 0.007230 C = 0.006054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.772254 B = 3871.822825 C = 4624.221935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.105 4.105 3 C 0.214 3.786 4 H 0.015 0.985 5 C -0.518 4.518 6 H 0.055 0.945 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.279 1.279 13 N -0.677 5.677 14 C 0.085 3.915 15 H 0.082 0.918 16 C -0.147 4.147 17 C -0.092 4.092 18 H 0.079 0.921 19 C -0.142 4.142 20 C -0.111 4.111 21 C -0.118 4.118 22 C -0.069 4.069 23 H 0.057 0.943 24 C -0.086 4.086 25 C -0.148 4.148 26 C -0.148 4.148 27 H 0.035 0.965 28 H 0.025 0.975 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.034 0.966 32 H 0.260 0.740 33 H 0.329 0.671 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.045 0.955 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.068 0.932 42 H 0.057 0.943 43 H 0.089 0.911 44 H 0.046 0.954 45 H 0.054 0.946 46 H 0.045 0.955 47 H 0.064 0.936 48 H 0.044 0.956 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.006 7.243 8.381 13.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.144 4.144 3 C 0.107 3.893 4 H 0.032 0.968 5 C -0.556 4.556 6 H 0.073 0.927 7 C -0.138 4.138 8 N -0.526 5.526 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.205 1.205 13 N -0.309 5.309 14 C -0.026 4.026 15 H 0.100 0.900 16 C -0.186 4.186 17 C -0.111 4.111 18 H 0.097 0.903 19 C -0.200 4.200 20 C -0.149 4.149 21 C -0.155 4.155 22 C -0.088 4.088 23 H 0.076 0.924 24 C -0.104 4.104 25 C -0.205 4.205 26 C -0.205 4.205 27 H 0.054 0.946 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.148 0.852 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.108 0.892 44 H 0.065 0.935 45 H 0.073 0.927 46 H 0.064 0.936 47 H 0.083 0.917 48 H 0.063 0.937 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.277 6.570 8.459 12.949 hybrid contribution 1.259 0.767 -0.850 1.702 sum -6.018 7.337 7.609 12.163 Atomic orbital electron populations 1.22069 0.99995 0.98730 1.00105 1.21524 0.91266 0.99983 1.01625 1.19153 0.94214 0.90985 0.84979 0.96756 1.21330 0.91882 1.38403 1.04013 0.92714 1.24880 0.97659 0.95306 0.95939 1.69880 1.34468 1.39187 1.09109 0.86699 0.86111 0.78131 0.77260 1.20325 1.21404 1.20468 1.60921 1.03179 1.33776 1.33010 1.21759 0.95511 0.93143 0.92183 0.90030 1.22291 0.97419 0.97493 1.01416 1.21086 1.00130 0.95981 0.93887 0.90255 1.21779 1.00471 0.98322 0.99393 1.21588 1.00513 0.97507 0.95247 1.21661 0.99769 0.96494 0.97578 1.21203 0.97404 0.95078 0.95111 0.92440 1.21043 0.99685 0.96596 0.93120 1.21956 1.00999 1.00284 0.97295 1.21934 0.97476 0.99796 1.01253 0.94604 0.95549 0.92747 0.89476 0.94695 0.93007 0.85180 0.90909 0.93460 0.93588 0.93419 0.92638 0.92846 0.92865 0.91365 0.92462 0.89241 0.93507 0.92710 0.93631 0.91678 0.93680 0.93730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 8.92 37.15 0.33 -2.74 16 2 C -0.11 -2.50 5.46 -26.73 -0.15 -2.65 16 3 C 0.21 5.08 1.96 -68.86 -0.14 4.95 16 4 H 0.01 0.39 5.48 -51.93 -0.28 0.10 16 5 C -0.52 -13.68 8.59 -34.44 -0.30 -13.97 16 6 H 0.05 1.44 7.49 -52.49 -0.39 1.05 16 7 C 0.06 1.73 5.28 -17.82 -0.09 1.64 16 8 N -0.89 -24.91 11.29 55.43 0.63 -24.28 16 9 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.68 -13.33 5.00 -100.95 -0.50 -13.83 16 14 C 0.08 1.44 1.88 -67.71 -0.13 1.31 16 15 H 0.08 1.46 4.26 -51.93 -0.22 1.24 16 16 C -0.15 -2.50 4.49 -26.73 -0.12 -2.62 16 17 C -0.09 -1.47 2.46 -90.62 -0.22 -1.69 16 18 H 0.08 1.47 6.74 -51.93 -0.35 1.12 16 19 C -0.14 -2.09 9.19 37.16 0.34 -1.75 16 20 C -0.11 -1.51 5.21 -26.73 -0.14 -1.65 16 21 C -0.12 -1.60 4.41 -26.73 -0.12 -1.71 16 22 C -0.07 -0.98 1.57 -90.62 -0.14 -1.13 16 23 H 0.06 0.80 8.01 -51.93 -0.42 0.38 16 24 C -0.09 -1.19 2.44 -90.62 -0.22 -1.41 16 25 C -0.15 -1.75 8.57 37.16 0.32 -1.43 16 26 C -0.15 -1.98 8.70 37.16 0.32 -1.66 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.05 1.01 3.31 -51.93 -0.17 0.84 16 30 H 0.09 2.34 5.91 -51.92 -0.31 2.03 16 31 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.33 6.58 4.47 -39.29 -0.18 6.40 16 34 H 0.07 1.46 6.02 -51.93 -0.31 1.15 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 1.02 6.59 -51.93 -0.34 0.68 16 42 H 0.06 0.70 6.33 -51.93 -0.33 0.37 16 43 H 0.09 1.44 7.41 -51.93 -0.38 1.05 16 44 H 0.05 0.52 8.13 -51.93 -0.42 0.10 16 45 H 0.05 0.63 6.33 -51.93 -0.33 0.30 16 46 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.98 5.37 -51.93 -0.28 0.70 16 48 H 0.04 0.55 7.99 -51.93 -0.42 0.13 16 49 H 0.04 0.56 7.90 -51.93 -0.41 0.15 16 LS Contribution 343.77 15.07 5.18 5.18 Total: -1.00 -26.00 343.77 -9.07 -35.07 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -8.91 Total: 8.27 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: -0.45 Total: -26.52 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.12 Total: -38.11 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -26.00 -9.07 -35.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226861991.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.879 kcal (2) G-P(sol) polarization free energy of solvation -26.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds