Wall clock time and date at job start Mon Mar 30 2020 07:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47411 * 2 1 4 4 H 1.09001 * 109.46996 * 307.42631 * 3 2 1 5 5 C 1.50700 * 109.47025 * 187.42846 * 3 2 1 6 6 H 1.08000 * 119.99737 * 240.00070 * 5 3 2 7 7 C 1.37873 * 120.00415 * 60.00210 * 5 3 2 8 8 N 1.31520 * 119.99786 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00406 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47304 * 59.99623 * 9 7 5 11 11 H 1.48501 * 109.47329 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46904 * 299.99922 * 9 7 5 13 13 N 1.46899 * 109.46579 * 67.43020 * 3 2 1 14 14 C 1.46904 * 110.99778 * 265.95140 * 13 3 2 15 15 H 1.09002 * 109.46966 * 59.14208 * 14 13 3 16 16 C 1.53002 * 109.47198 * 299.14255 * 14 13 3 17 17 C 1.52995 * 109.47318 * 300.00170 * 16 14 13 18 18 H 1.09000 * 109.47230 * 59.99447 * 17 16 14 19 19 C 1.53002 * 109.47318 * 179.97438 * 17 16 14 20 20 C 1.53004 * 109.46888 * 299.99953 * 17 16 14 21 21 C 1.53002 * 109.47103 * 59.99914 * 20 17 16 22 22 C 1.52995 * 109.47318 * 299.99822 * 21 20 17 23 23 H 1.09000 * 109.47230 * 300.00553 * 22 21 20 24 24 C 1.52996 * 109.47039 * 179.97438 * 22 21 20 25 25 C 1.52998 * 109.47220 * 53.50243 * 24 22 21 26 26 C 1.53009 * 109.47060 * 173.49991 * 24 22 21 27 27 H 1.09007 * 109.47516 * 58.84150 * 1 2 3 28 28 H 1.08999 * 109.47650 * 178.84175 * 1 2 3 29 29 H 1.09006 * 109.47308 * 298.84264 * 1 2 3 30 30 H 1.09008 * 109.47098 * 240.00288 * 2 1 3 31 31 H 1.09002 * 109.47407 * 120.00280 * 2 1 3 32 32 H 0.96998 * 120.00082 * 179.97438 * 8 7 5 33 33 H 1.00904 * 110.99804 * 142.00380 * 13 3 2 34 34 H 1.09001 * 109.46835 * 59.99992 * 16 14 13 35 35 H 1.08996 * 109.47075 * 180.02562 * 16 14 13 36 36 H 1.09008 * 109.46728 * 60.00014 * 19 17 16 37 37 H 1.09002 * 109.47124 * 179.97438 * 19 17 16 38 38 H 1.08993 * 109.47158 * 299.99964 * 19 17 16 39 39 H 1.09002 * 109.47241 * 179.97438 * 20 17 16 40 40 H 1.08996 * 109.47218 * 299.99925 * 20 17 16 41 41 H 1.09001 * 109.46682 * 60.00175 * 21 20 17 42 42 H 1.09001 * 109.46835 * 179.97438 * 21 20 17 43 43 H 1.08999 * 109.47520 * 293.49727 * 24 22 21 44 44 H 1.09004 * 109.46948 * 179.97438 * 25 24 22 45 45 H 1.08999 * 109.46830 * 299.99409 * 25 24 22 46 46 H 1.08999 * 109.47295 * 59.99347 * 25 24 22 47 47 H 1.09001 * 109.46892 * 78.78042 * 26 24 22 48 48 H 1.08998 * 109.46940 * 198.78906 * 26 24 22 49 49 H 1.09002 * 109.46817 * 318.78232 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5723 1.9932 -0.8161 5 6 3.5357 1.4464 -0.1837 6 1 4.1717 1.8801 0.5739 7 6 4.0924 0.8963 -1.3188 8 7 3.3180 0.3678 -2.2411 9 14 5.9465 0.9005 -1.5462 10 1 6.5832 0.1497 -0.4344 11 1 6.2881 0.2553 -2.8394 12 1 6.4420 2.3004 -1.5458 13 7 1.7020 2.0812 1.2790 14 6 0.4320 2.8132 1.1824 15 1 -0.3640 2.1240 0.9005 16 6 0.5551 3.9107 0.1234 17 6 1.6725 4.8781 0.5190 18 1 2.6148 4.3349 0.5907 19 6 1.7960 5.9752 -0.5403 20 6 1.3440 5.5104 1.8730 21 6 1.2209 4.4129 2.9319 22 6 0.1036 3.4455 2.5364 23 1 -0.8388 3.9887 2.4647 24 6 -0.0191 2.3478 3.5950 25 6 -0.1859 2.9866 4.9752 26 6 -1.2375 1.4753 3.2863 27 1 -0.3634 0.5317 -0.8794 28 1 -0.3634 -1.0274 -0.0208 29 1 -0.3634 0.4958 0.9002 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8900 32 1 3.7096 -0.0189 -3.0399 33 1 2.4466 2.6882 1.5879 34 1 0.7891 3.4602 -0.8411 35 1 -0.3870 4.4541 0.0521 36 1 0.8537 6.5184 -0.6123 37 1 2.5918 6.6646 -0.2582 38 1 2.0302 5.5244 -1.5046 39 1 2.1403 6.1992 2.1550 40 1 0.4017 6.0535 1.8013 41 1 2.1633 3.8698 3.0035 42 1 0.9874 4.8634 3.8966 43 1 0.8803 1.7320 3.5859 44 1 -0.2737 2.2044 5.7293 45 1 0.6822 3.6080 5.1952 46 1 -1.0852 3.6023 4.9843 47 1 -0.9895 0.7736 2.4899 48 1 -1.5250 0.9230 4.1809 49 1 -2.0661 2.1080 2.9680 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226861991.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:15 Heat of formation + Delta-G solvation = -50.075892 kcal Electronic energy + Delta-G solvation = -23039.258044 eV Core-core repulsion = 20192.049100 eV Total energy + Delta-G solvation = -2847.208944 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.97759 -37.14419 -36.36450 -34.17881 -32.52414 -31.73798 -30.25553 -27.85173 -27.66543 -26.94902 -24.68995 -23.10185 -22.57138 -21.38311 -20.47638 -19.55934 -18.56096 -16.96286 -16.32867 -16.25096 -15.79054 -15.44350 -14.89964 -14.66733 -14.55855 -14.32713 -13.90982 -13.77145 -13.51222 -13.40957 -13.15258 -13.01213 -12.96966 -12.91205 -12.82830 -12.66514 -12.47230 -12.25009 -11.92772 -11.85307 -11.78109 -11.65791 -11.50939 -11.22427 -11.16212 -11.11335 -10.74314 -10.69740 -10.49469 -10.28256 -8.70488 -8.06853 -6.19324 1.39822 1.40881 1.47916 2.42494 3.20111 3.76510 3.84960 3.95367 4.07478 4.20479 4.23644 4.37376 4.48294 4.59033 4.64794 4.66802 4.73128 4.77019 4.77751 4.82057 4.86449 4.89483 4.95275 5.00341 5.04229 5.09385 5.15293 5.15736 5.19687 5.25176 5.29043 5.29251 5.39350 5.46704 5.49904 5.56549 5.58961 5.62536 5.65867 5.72646 5.80952 5.81457 5.91372 6.07564 6.38720 6.64508 6.97904 7.19376 7.50268 8.96476 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.016866 B = 0.007230 C = 0.006054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.772254 B = 3871.822825 C = 4624.221935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 C 0.224 3.776 4 H -0.013 1.013 5 C -0.531 4.531 6 H 0.050 0.950 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.949 3.051 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.669 5.669 14 C 0.085 3.915 15 H 0.073 0.927 16 C -0.142 4.142 17 C -0.091 4.091 18 H 0.045 0.955 19 C -0.139 4.139 20 C -0.104 4.104 21 C -0.115 4.115 22 C -0.062 4.062 23 H 0.074 0.926 24 C -0.085 4.085 25 C -0.142 4.142 26 C -0.145 4.145 27 H 0.027 0.973 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.024 0.976 32 H 0.259 0.741 33 H 0.327 0.673 34 H 0.032 0.968 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.031 0.969 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.050 0.950 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.052 0.948 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.043 0.957 48 H 0.056 0.944 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.890 8.865 10.303 15.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.140 4.140 3 C 0.116 3.884 4 H 0.005 0.995 5 C -0.570 4.570 6 H 0.069 0.931 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.775 3.225 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.300 5.300 14 C -0.026 4.026 15 H 0.090 0.910 16 C -0.181 4.181 17 C -0.110 4.110 18 H 0.063 0.937 19 C -0.196 4.196 20 C -0.141 4.141 21 C -0.152 4.152 22 C -0.080 4.080 23 H 0.092 0.908 24 C -0.103 4.103 25 C -0.199 4.199 26 C -0.202 4.202 27 H 0.047 0.953 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.043 0.957 32 H 0.068 0.932 33 H 0.146 0.854 34 H 0.051 0.949 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.051 0.949 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.100 0.900 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.062 0.938 48 H 0.076 0.924 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.165 8.199 10.394 15.554 hybrid contribution 1.509 0.259 -1.450 2.109 sum -6.656 8.458 8.944 13.994 Atomic orbital electron populations 1.21934 0.97195 0.99899 1.00675 1.21371 0.93796 0.99442 0.99388 1.18876 0.92661 0.90997 0.85894 0.99524 1.21682 0.93459 1.37951 1.03905 0.93135 1.25598 1.01648 0.95183 0.95838 1.70019 1.35987 1.39955 1.09430 0.85761 0.81372 0.78223 0.77143 1.19922 1.21175 1.19918 1.60837 1.04276 1.34437 1.30471 1.21810 0.93565 0.92915 0.94268 0.90951 1.22206 0.98787 0.97795 0.99334 1.21037 0.97914 0.95905 0.96110 0.93686 1.21748 1.01996 0.98113 0.97787 1.21539 1.01803 0.97523 0.93226 1.21648 0.98546 0.96216 0.98789 1.21157 0.98349 0.95345 0.93172 0.90776 1.20984 0.98664 0.96231 0.94450 1.21888 1.01810 1.00557 0.95664 1.21904 0.97634 0.99602 1.01103 0.95338 0.94009 0.90920 0.92725 0.95707 0.93206 0.85354 0.94934 0.91493 0.91641 0.92070 0.94932 0.91596 0.91110 0.93175 0.90013 0.91959 0.92939 0.92310 0.92260 0.93807 0.92450 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.73 8.92 71.98 0.64 -5.09 16 2 C -0.10 -4.99 5.46 30.59 0.17 -4.82 16 3 C 0.22 11.09 1.96 44.17 0.09 11.18 16 4 H -0.01 -0.70 5.48 -2.39 -0.01 -0.71 16 5 C -0.53 -29.08 8.59 25.60 0.22 -28.86 16 6 H 0.05 2.74 7.49 -2.91 -0.02 2.72 16 7 C 0.02 0.91 5.28 84.65 0.45 1.36 16 8 N -0.91 -53.19 11.29 21.45 0.24 -52.94 16 9 Si 0.95 44.23 29.54 68.60 2.03 46.26 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 13 N -0.67 -26.97 5.00 -473.29 -2.37 -29.34 16 14 C 0.08 2.84 1.88 44.92 0.08 2.93 16 15 H 0.07 2.57 4.26 -2.39 -0.01 2.56 16 16 C -0.14 -4.85 4.49 30.59 0.14 -4.71 16 17 C -0.09 -2.84 2.46 -10.79 -0.03 -2.87 16 18 H 0.04 1.71 6.74 -2.39 -0.02 1.70 16 19 C -0.14 -3.96 9.19 71.98 0.66 -3.30 16 20 C -0.10 -2.53 5.21 30.60 0.16 -2.37 16 21 C -0.11 -2.82 4.41 30.59 0.13 -2.69 16 22 C -0.06 -1.62 1.57 -10.80 -0.02 -1.63 16 23 H 0.07 1.77 8.01 -2.39 -0.02 1.75 16 24 C -0.08 -2.17 2.44 -10.79 -0.03 -2.19 16 25 C -0.14 -2.87 8.57 71.98 0.62 -2.26 16 26 C -0.15 -3.60 8.70 71.99 0.63 -2.97 16 27 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.07 2.70 3.31 -2.38 -0.01 2.69 16 30 H 0.05 3.06 5.91 -2.38 -0.01 3.05 16 31 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 33 H 0.33 13.46 4.47 -89.69 -0.40 13.06 16 34 H 0.03 1.36 6.02 -2.39 -0.01 1.35 16 35 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 37 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.05 1.43 6.59 -2.39 -0.02 1.42 16 42 H 0.08 1.66 6.33 -2.39 -0.02 1.65 16 43 H 0.06 1.95 7.41 -2.39 -0.02 1.93 16 44 H 0.05 1.01 8.13 -2.38 -0.02 0.99 16 45 H 0.06 1.14 6.33 -2.39 -0.02 1.13 16 46 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.04 1.26 5.37 -2.39 -0.01 1.24 16 48 H 0.06 1.26 7.99 -2.39 -0.02 1.24 16 49 H 0.06 1.25 7.90 -2.39 -0.02 1.23 16 Total: -1.00 -57.96 343.77 4.32 -53.64 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 0.50 Total: 30.68 kcal Atomic # 6 Polarization: -52.21 SS G_CDS: 3.91 Total: -48.30 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -2.12 Total: -82.28 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -57.96 4.32 -53.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226861991.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.567 kcal (2) G-P(sol) polarization free energy of solvation -57.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds