Wall clock time and date at job start Mon Mar 30 2020 07:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47240 * 2 1 4 4 H 1.08998 * 109.47119 * 303.07662 * 3 2 1 5 5 C 1.50703 * 109.46981 * 183.07829 * 3 2 1 6 6 H 1.08000 * 119.99837 * 240.00321 * 5 3 2 7 7 C 1.37877 * 120.00162 * 60.00267 * 5 3 2 8 8 N 1.31508 * 119.99921 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99969 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46955 * 59.99804 * 9 7 5 11 11 H 1.48502 * 109.46738 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.46923 * 299.99591 * 9 7 5 13 13 N 1.46898 * 109.46969 * 63.08031 * 3 2 1 14 14 C 1.46905 * 110.99574 * 206.63585 * 13 3 2 15 15 H 1.08993 * 109.47029 * 324.66450 * 14 13 3 16 16 C 1.52990 * 109.47260 * 84.66990 * 14 13 3 17 17 C 1.52999 * 109.47292 * 179.97438 * 16 14 13 18 18 H 1.08999 * 109.47565 * 59.99663 * 17 16 14 19 19 C 1.53003 * 109.47314 * 179.97438 * 17 16 14 20 20 C 1.53004 * 109.46770 * 299.99690 * 17 16 14 21 21 C 1.52995 * 109.47272 * 60.00105 * 20 17 16 22 22 C 1.53001 * 109.46891 * 299.99957 * 21 20 17 23 23 H 1.08989 * 109.47251 * 299.99781 * 22 21 20 24 24 C 1.53003 * 109.47067 * 179.97438 * 22 21 20 25 25 C 1.53008 * 109.47211 * 303.87351 * 24 22 21 26 26 C 1.52995 * 109.46973 * 63.87142 * 24 22 21 27 27 H 1.08998 * 109.47602 * 184.52265 * 1 2 3 28 28 H 1.08998 * 109.47350 * 304.52770 * 1 2 3 29 29 H 1.09002 * 109.47183 * 64.52426 * 1 2 3 30 30 H 1.09002 * 109.47320 * 240.00105 * 2 1 3 31 31 H 1.09002 * 109.47068 * 120.00163 * 2 1 3 32 32 H 0.97007 * 120.00404 * 180.02562 * 8 7 5 33 33 H 1.00899 * 111.00131 * 82.68381 * 13 3 2 34 34 H 1.08998 * 109.47386 * 299.99689 * 16 14 13 35 35 H 1.09002 * 109.47480 * 59.99562 * 16 14 13 36 36 H 1.09004 * 109.47000 * 60.00166 * 19 17 16 37 37 H 1.08997 * 109.47225 * 179.97438 * 19 17 16 38 38 H 1.09000 * 109.47000 * 300.00034 * 19 17 16 39 39 H 1.09003 * 109.46801 * 179.97438 * 20 17 16 40 40 H 1.08993 * 109.47266 * 299.99604 * 20 17 16 41 41 H 1.09004 * 109.46975 * 59.99381 * 21 20 17 42 42 H 1.08998 * 109.47698 * 179.97438 * 21 20 17 43 43 H 1.08996 * 109.47166 * 183.87304 * 24 22 21 44 44 H 1.08996 * 109.47206 * 180.02562 * 25 24 22 45 45 H 1.09003 * 109.47065 * 300.00450 * 25 24 22 46 46 H 1.09004 * 109.46792 * 59.99708 * 25 24 22 47 47 H 1.08998 * 109.47159 * 62.33300 * 26 24 22 48 48 H 1.09013 * 109.47127 * 182.32859 * 26 24 22 49 49 H 1.08995 * 109.47561 * 302.33034 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6323 1.9720 -0.8611 5 6 3.5451 1.4431 -0.0763 6 1 4.1256 1.8963 0.7136 7 6 4.1810 0.8650 -1.1545 8 7 3.4741 0.3126 -2.1161 9 14 6.0466 0.8652 -1.2487 10 1 6.6015 0.1433 -0.0755 11 1 6.4792 0.1868 -2.4968 12 1 6.5421 2.2650 -1.2483 13 7 1.6120 2.1131 1.2349 14 6 1.5015 3.5643 1.0347 15 1 2.2798 3.8965 0.3478 16 6 0.1280 3.8950 0.4476 17 6 0.0127 5.4064 0.2397 18 1 0.7909 5.7391 -0.4470 19 6 -1.3608 5.7370 -0.3480 20 6 0.1784 6.1200 1.5829 21 6 1.5520 5.7894 2.1700 22 6 1.6673 4.2779 2.3779 23 1 0.8891 3.9452 3.0646 24 6 3.0412 3.9471 2.9644 25 6 4.1339 4.4996 2.0469 26 6 3.1701 4.5818 4.3505 27 1 -0.3634 -1.0244 0.0810 28 1 -0.3634 0.5825 0.8466 29 1 -0.3634 0.4420 -0.9278 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.9214 -0.0944 -2.8745 33 1 2.2373 1.8999 1.9975 34 1 0.0096 3.3862 -0.5090 35 1 -0.6504 3.5626 1.1346 36 1 -2.1394 5.4043 0.3385 37 1 -1.4431 6.8138 -0.4957 38 1 -1.4785 5.2286 -1.3049 39 1 0.0967 7.1968 1.4347 40 1 -0.5999 5.7874 2.2696 41 1 2.3303 6.1220 1.4832 42 1 1.6704 6.2981 3.1267 43 1 3.1496 2.8658 3.0484 44 1 5.1127 4.2635 2.4645 45 1 4.0420 4.0475 1.0593 46 1 4.0254 5.5809 1.9630 47 1 2.4179 4.1578 5.0157 48 1 4.1639 4.3811 4.7511 49 1 3.0206 5.6586 4.2725 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226862004.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:20 Heat of formation + Delta-G solvation = -47.331914 kcal Electronic energy + Delta-G solvation = -22772.321346 eV Core-core repulsion = 19925.231389 eV Total energy + Delta-G solvation = -2847.089956 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.45803 -35.64104 -35.25229 -32.36082 -31.08056 -30.47679 -28.23667 -26.88183 -26.04105 -25.47480 -22.91506 -22.37471 -20.75084 -19.66255 -19.28180 -18.33136 -16.60256 -15.14891 -14.90030 -14.69701 -14.25619 -14.07136 -13.92600 -13.40051 -12.94693 -12.89416 -12.67167 -12.61729 -12.33438 -12.07166 -11.72177 -11.57165 -11.43440 -11.23779 -11.12708 -10.94654 -10.82449 -10.79738 -10.67138 -10.61724 -10.37498 -10.28587 -10.08825 -9.90994 -9.75594 -9.51971 -9.36246 -9.22150 -8.88108 -8.31891 -7.12176 -5.94794 -4.07093 3.29104 3.34558 3.36908 4.42115 4.92531 4.99674 5.06336 5.23048 5.28838 5.30464 5.42251 5.54401 5.61119 5.73075 5.87464 5.90363 5.91878 5.96474 6.02493 6.03873 6.07453 6.12025 6.19414 6.27166 6.29205 6.32943 6.38369 6.44571 6.54765 6.58327 6.58789 6.62432 6.71513 6.77428 6.81124 6.87792 6.90774 7.09282 7.21054 7.24496 7.54683 7.67763 7.84086 8.17073 8.25344 8.43673 8.78739 9.07609 9.60212 11.05019 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.015036 B = 0.007377 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.800682 B = 3794.582075 C = 4640.918727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 C 0.217 3.783 4 H 0.031 0.969 5 C -0.541 4.541 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.883 3.117 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.279 1.279 13 N -0.688 5.688 14 C 0.099 3.901 15 H 0.048 0.952 16 C -0.097 4.097 17 C -0.094 4.094 18 H 0.065 0.935 19 C -0.144 4.144 20 C -0.110 4.110 21 C -0.115 4.115 22 C -0.079 4.079 23 H 0.068 0.932 24 C -0.093 4.093 25 C -0.154 4.154 26 C -0.145 4.145 27 H 0.022 0.978 28 H 0.051 0.949 29 H 0.033 0.967 30 H 0.087 0.913 31 H 0.028 0.972 32 H 0.260 0.740 33 H 0.327 0.673 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.044 0.956 45 H 0.073 0.927 46 H 0.049 0.951 47 H 0.049 0.951 48 H 0.048 0.952 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.015 9.752 7.569 13.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.109 3.891 4 H 0.049 0.951 5 C -0.580 4.580 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.711 3.289 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.319 5.319 14 C -0.012 4.012 15 H 0.066 0.934 16 C -0.135 4.135 17 C -0.113 4.113 18 H 0.084 0.916 19 C -0.201 4.201 20 C -0.147 4.147 21 C -0.152 4.152 22 C -0.098 4.098 23 H 0.086 0.914 24 C -0.112 4.112 25 C -0.211 4.211 26 C -0.202 4.202 27 H 0.041 0.959 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.106 0.894 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.146 0.854 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.063 0.937 45 H 0.092 0.908 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.067 0.933 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.665 9.519 7.272 13.251 hybrid contribution 2.103 0.142 -0.228 2.121 sum -3.562 9.661 7.045 12.475 Atomic orbital electron populations 1.21708 0.99135 0.98280 1.00352 1.21492 0.91977 0.99525 1.01453 1.19114 0.92251 0.90888 0.86826 0.95113 1.21887 0.92745 1.37338 1.06052 0.92656 1.24914 0.97635 0.95179 0.95722 1.69868 1.34885 1.37853 1.09796 0.86804 0.86600 0.78144 0.77319 1.20364 1.21345 1.20422 1.60926 1.55318 1.06230 1.09426 1.21332 0.95854 0.89542 0.94441 0.93390 1.21549 0.97813 0.93123 1.01027 1.21150 0.97051 0.96620 0.96436 0.91642 1.21804 0.97124 1.00439 1.00751 1.21566 0.97450 0.98985 0.96748 1.21661 0.97091 0.96205 1.00280 1.21280 0.96349 0.94592 0.97562 0.91388 1.21131 0.95118 1.00535 0.94399 1.21996 0.97486 1.00396 1.01219 1.21875 1.00901 1.00563 0.96880 0.95913 0.92983 0.94745 0.89427 0.95310 0.92963 0.85356 0.92159 0.92343 0.93008 0.93394 0.92817 0.92901 0.92381 0.91815 0.92411 0.90744 0.93688 0.90778 0.93209 0.93146 0.93320 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.84 37.16 0.37 -2.48 16 2 C -0.11 -2.53 5.44 -26.73 -0.15 -2.68 16 3 C 0.22 5.23 1.80 -68.86 -0.12 5.11 16 4 H 0.03 0.83 7.09 -51.93 -0.37 0.46 16 5 C -0.54 -14.16 8.34 -34.44 -0.29 -14.44 16 6 H 0.06 1.43 6.89 -52.49 -0.36 1.07 16 7 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 8 N -0.89 -24.91 11.30 55.43 0.63 -24.28 16 9 Si 0.88 21.07 29.54 -169.99 -5.02 16.05 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.69 -13.91 5.35 -100.96 -0.54 -14.45 16 14 C 0.10 1.76 1.51 -67.71 -0.10 1.66 16 15 H 0.05 0.99 6.08 -51.93 -0.32 0.68 16 16 C -0.10 -1.61 4.68 -26.74 -0.13 -1.74 16 17 C -0.09 -1.31 2.72 -90.62 -0.25 -1.55 16 18 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 19 C -0.14 -1.76 9.19 37.16 0.34 -1.42 16 20 C -0.11 -1.37 5.20 -26.73 -0.14 -1.51 16 21 C -0.11 -1.49 4.48 -26.73 -0.12 -1.61 16 22 C -0.08 -1.17 1.64 -90.62 -0.15 -1.32 16 23 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 24 C -0.09 -1.38 2.55 -90.62 -0.23 -1.61 16 25 C -0.15 -2.42 8.47 37.16 0.31 -2.10 16 26 C -0.14 -1.79 8.98 37.16 0.33 -1.45 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 1.04 7.57 -51.93 -0.39 0.65 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 2.35 5.99 -51.93 -0.31 2.04 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.33 6.65 5.76 -39.29 -0.23 6.42 16 34 H 0.06 1.13 7.42 -51.93 -0.39 0.75 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.87 6.36 -51.93 -0.33 0.54 16 42 H 0.06 0.68 6.48 -51.93 -0.34 0.34 16 43 H 0.07 1.23 6.07 -51.93 -0.32 0.92 16 44 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 1.39 5.70 -51.93 -0.30 1.10 16 46 H 0.05 0.70 6.36 -51.93 -0.33 0.37 16 47 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.05 0.58 8.14 -51.92 -0.42 0.15 16 49 H 0.05 0.60 6.42 -51.93 -0.33 0.27 16 LS Contribution 354.16 15.07 5.34 5.34 Total: -1.00 -26.14 354.16 -9.36 -35.50 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -9.36 Total: 7.26 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: -0.41 Total: -25.41 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.09 Total: -38.74 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -26.14 -9.36 -35.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226862004.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.827 kcal (2) G-P(sol) polarization free energy of solvation -26.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds