Wall clock time and date at job start Mon Mar 30 2020 07:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47240 * 2 1 4 4 H 1.08998 * 109.47119 * 303.07662 * 3 2 1 5 5 C 1.50703 * 109.46981 * 183.07829 * 3 2 1 6 6 H 1.08000 * 119.99837 * 240.00321 * 5 3 2 7 7 C 1.37877 * 120.00162 * 60.00267 * 5 3 2 8 8 N 1.31508 * 119.99921 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99969 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46955 * 59.99804 * 9 7 5 11 11 H 1.48502 * 109.46738 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.46923 * 299.99591 * 9 7 5 13 13 N 1.46898 * 109.46969 * 63.08031 * 3 2 1 14 14 C 1.46905 * 110.99574 * 206.63585 * 13 3 2 15 15 H 1.08993 * 109.47029 * 324.66450 * 14 13 3 16 16 C 1.52990 * 109.47260 * 84.66990 * 14 13 3 17 17 C 1.52999 * 109.47292 * 179.97438 * 16 14 13 18 18 H 1.08999 * 109.47565 * 59.99663 * 17 16 14 19 19 C 1.53003 * 109.47314 * 179.97438 * 17 16 14 20 20 C 1.53004 * 109.46770 * 299.99690 * 17 16 14 21 21 C 1.52995 * 109.47272 * 60.00105 * 20 17 16 22 22 C 1.53001 * 109.46891 * 299.99957 * 21 20 17 23 23 H 1.08989 * 109.47251 * 299.99781 * 22 21 20 24 24 C 1.53003 * 109.47067 * 179.97438 * 22 21 20 25 25 C 1.53008 * 109.47211 * 303.87351 * 24 22 21 26 26 C 1.52995 * 109.46973 * 63.87142 * 24 22 21 27 27 H 1.08998 * 109.47602 * 184.52265 * 1 2 3 28 28 H 1.08998 * 109.47350 * 304.52770 * 1 2 3 29 29 H 1.09002 * 109.47183 * 64.52426 * 1 2 3 30 30 H 1.09002 * 109.47320 * 240.00105 * 2 1 3 31 31 H 1.09002 * 109.47068 * 120.00163 * 2 1 3 32 32 H 0.97007 * 120.00404 * 180.02562 * 8 7 5 33 33 H 1.00899 * 111.00131 * 82.68381 * 13 3 2 34 34 H 1.08998 * 109.47386 * 299.99689 * 16 14 13 35 35 H 1.09002 * 109.47480 * 59.99562 * 16 14 13 36 36 H 1.09004 * 109.47000 * 60.00166 * 19 17 16 37 37 H 1.08997 * 109.47225 * 179.97438 * 19 17 16 38 38 H 1.09000 * 109.47000 * 300.00034 * 19 17 16 39 39 H 1.09003 * 109.46801 * 179.97438 * 20 17 16 40 40 H 1.08993 * 109.47266 * 299.99604 * 20 17 16 41 41 H 1.09004 * 109.46975 * 59.99381 * 21 20 17 42 42 H 1.08998 * 109.47698 * 179.97438 * 21 20 17 43 43 H 1.08996 * 109.47166 * 183.87304 * 24 22 21 44 44 H 1.08996 * 109.47206 * 180.02562 * 25 24 22 45 45 H 1.09003 * 109.47065 * 300.00450 * 25 24 22 46 46 H 1.09004 * 109.46792 * 59.99708 * 25 24 22 47 47 H 1.08998 * 109.47159 * 62.33300 * 26 24 22 48 48 H 1.09013 * 109.47127 * 182.32859 * 26 24 22 49 49 H 1.08995 * 109.47561 * 302.33034 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6323 1.9720 -0.8611 5 6 3.5451 1.4431 -0.0763 6 1 4.1256 1.8963 0.7136 7 6 4.1810 0.8650 -1.1545 8 7 3.4741 0.3126 -2.1161 9 14 6.0466 0.8652 -1.2487 10 1 6.6015 0.1433 -0.0755 11 1 6.4792 0.1868 -2.4968 12 1 6.5421 2.2650 -1.2483 13 7 1.6120 2.1131 1.2349 14 6 1.5015 3.5643 1.0347 15 1 2.2798 3.8965 0.3478 16 6 0.1280 3.8950 0.4476 17 6 0.0127 5.4064 0.2397 18 1 0.7909 5.7391 -0.4470 19 6 -1.3608 5.7370 -0.3480 20 6 0.1784 6.1200 1.5829 21 6 1.5520 5.7894 2.1700 22 6 1.6673 4.2779 2.3779 23 1 0.8891 3.9452 3.0646 24 6 3.0412 3.9471 2.9644 25 6 4.1339 4.4996 2.0469 26 6 3.1701 4.5818 4.3505 27 1 -0.3634 -1.0244 0.0810 28 1 -0.3634 0.5825 0.8466 29 1 -0.3634 0.4420 -0.9278 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.9214 -0.0944 -2.8745 33 1 2.2373 1.8999 1.9975 34 1 0.0096 3.3862 -0.5090 35 1 -0.6504 3.5626 1.1346 36 1 -2.1394 5.4043 0.3385 37 1 -1.4431 6.8138 -0.4957 38 1 -1.4785 5.2286 -1.3049 39 1 0.0967 7.1968 1.4347 40 1 -0.5999 5.7874 2.2696 41 1 2.3303 6.1220 1.4832 42 1 1.6704 6.2981 3.1267 43 1 3.1496 2.8658 3.0484 44 1 5.1127 4.2635 2.4645 45 1 4.0420 4.0475 1.0593 46 1 4.0254 5.5809 1.9630 47 1 2.4179 4.1578 5.0157 48 1 4.1639 4.3811 4.7511 49 1 3.0206 5.6586 4.2725 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226862004.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:19 Heat of formation + Delta-G solvation = -59.604014 kcal Electronic energy + Delta-G solvation = -22772.853504 eV Core-core repulsion = 19925.231389 eV Total energy + Delta-G solvation = -2847.622115 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.75932 -37.36646 -36.46818 -34.22948 -32.85762 -31.57828 -29.84096 -28.04906 -27.64310 -26.86812 -24.68262 -23.62559 -22.15090 -21.18297 -20.83841 -19.59226 -18.62149 -16.78710 -16.48573 -16.04361 -15.62672 -15.52884 -15.27435 -14.84108 -14.62220 -14.28388 -13.99135 -13.84680 -13.57323 -13.41295 -13.20454 -13.08156 -12.99049 -12.82551 -12.69374 -12.59886 -12.35759 -12.13597 -12.03948 -11.99107 -11.83491 -11.60677 -11.48455 -11.43596 -11.34101 -11.14607 -10.90483 -10.69901 -10.52544 -10.40754 -8.91946 -8.01645 -6.22688 1.36281 1.36953 1.43878 2.39909 3.17286 3.62479 3.83810 3.88067 4.01548 4.14055 4.29457 4.33104 4.50670 4.57892 4.60757 4.64148 4.72728 4.78248 4.79983 4.82574 4.85420 4.88122 4.93576 4.97719 5.05960 5.07590 5.11318 5.15727 5.20918 5.22307 5.28522 5.35664 5.38743 5.43493 5.45615 5.50782 5.52721 5.57632 5.61231 5.64719 5.68689 5.77185 5.84423 6.17152 6.27311 6.50754 6.94425 7.11979 7.48339 8.94089 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.015036 B = 0.007377 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.800682 B = 3794.582075 C = 4640.918727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.103 4.103 3 C 0.229 3.771 4 H -0.006 1.006 5 C -0.548 4.548 6 H 0.054 0.946 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.941 3.059 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.679 5.679 14 C 0.100 3.900 15 H 0.013 0.987 16 C -0.091 4.091 17 C -0.092 4.092 18 H 0.049 0.951 19 C -0.140 4.140 20 C -0.104 4.104 21 C -0.111 4.111 22 C -0.070 4.070 23 H 0.074 0.926 24 C -0.092 4.092 25 C -0.149 4.149 26 C -0.137 4.137 27 H 0.043 0.957 28 H 0.060 0.940 29 H 0.026 0.974 30 H 0.057 0.943 31 H 0.025 0.975 32 H 0.259 0.741 33 H 0.328 0.672 34 H 0.026 0.974 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.042 0.958 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.054 0.946 42 H 0.083 0.917 43 H 0.052 0.948 44 H 0.047 0.953 45 H 0.034 0.966 46 H 0.067 0.933 47 H 0.059 0.941 48 H 0.052 0.948 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.473 11.503 9.678 15.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.142 4.142 3 C 0.120 3.880 4 H 0.012 0.988 5 C -0.587 4.587 6 H 0.072 0.928 7 C -0.180 4.180 8 N -0.553 5.553 9 Si 0.767 3.233 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.310 5.310 14 C -0.010 4.010 15 H 0.032 0.968 16 C -0.129 4.129 17 C -0.111 4.111 18 H 0.068 0.932 19 C -0.197 4.197 20 C -0.142 4.142 21 C -0.149 4.149 22 C -0.089 4.089 23 H 0.092 0.908 24 C -0.111 4.111 25 C -0.206 4.206 26 C -0.194 4.194 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.147 0.853 34 H 0.045 0.955 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.101 0.899 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.053 0.947 46 H 0.086 0.914 47 H 0.078 0.922 48 H 0.071 0.929 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.126 11.278 9.394 15.905 hybrid contribution 2.243 -0.405 -0.906 2.453 sum -3.884 10.873 8.488 14.330 Atomic orbital electron populations 1.21550 0.96533 0.99701 1.00309 1.21364 0.94295 0.98824 0.99690 1.18815 0.91098 0.90979 0.87116 0.98827 1.22192 0.94019 1.36627 1.05885 0.92792 1.25617 1.01633 0.95156 0.95605 1.70007 1.36311 1.38711 1.10247 0.85878 0.81885 0.78140 0.77356 1.19753 1.21126 1.20092 1.60891 1.54572 1.07852 1.07667 1.21371 0.95500 0.88143 0.95977 0.96849 1.21481 0.97009 0.95257 0.99169 1.21125 0.97811 0.94446 0.97695 0.93212 1.21766 0.96023 1.01658 1.00264 1.21542 0.97201 1.00044 0.95378 1.21652 0.97369 0.94434 1.01418 1.21208 0.96570 0.95836 0.95287 0.90798 1.21101 0.94625 0.99382 0.96002 1.21930 0.98152 1.01248 0.99251 1.21803 1.01602 1.01238 0.94803 0.93836 0.92116 0.95460 0.92432 0.95654 0.93146 0.85321 0.95488 0.91831 0.92073 0.91386 0.93924 0.90684 0.91338 0.92737 0.89892 0.93004 0.93390 0.94717 0.91427 0.92186 0.92853 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.15 9.84 71.98 0.71 -4.44 16 2 C -0.10 -5.08 5.44 30.59 0.17 -4.92 16 3 C 0.23 11.53 1.80 44.17 0.08 11.61 16 4 H -0.01 -0.36 7.09 -2.39 -0.02 -0.37 16 5 C -0.55 -29.78 8.34 25.60 0.21 -29.57 16 6 H 0.05 2.88 6.89 -2.91 -0.02 2.86 16 7 C 0.02 1.08 5.30 84.66 0.45 1.53 16 8 N -0.91 -53.27 11.30 21.45 0.24 -53.03 16 9 Si 0.94 44.17 29.54 68.60 2.03 46.19 16 10 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 N -0.68 -28.26 5.35 -473.32 -2.53 -30.80 16 14 C 0.10 3.66 1.51 44.91 0.07 3.73 16 15 H 0.01 0.59 6.08 -2.39 -0.01 0.58 16 16 C -0.09 -3.07 4.68 30.59 0.14 -2.93 16 17 C -0.09 -2.48 2.72 -10.79 -0.03 -2.51 16 18 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 19 C -0.14 -3.19 9.19 71.98 0.66 -2.53 16 20 C -0.10 -2.27 5.20 30.59 0.16 -2.11 16 21 C -0.11 -2.59 4.48 30.59 0.14 -2.46 16 22 C -0.07 -1.99 1.64 -10.79 -0.02 -2.01 16 23 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 24 C -0.09 -2.63 2.55 -10.79 -0.03 -2.65 16 25 C -0.15 -4.62 8.47 71.98 0.61 -4.01 16 26 C -0.14 -2.97 8.98 71.98 0.65 -2.32 16 27 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.06 2.40 7.57 -2.39 -0.02 2.38 16 29 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 3.20 5.99 -2.39 -0.01 3.19 16 31 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.26 14.53 8.31 -92.70 -0.77 13.76 16 33 H 0.33 13.60 5.76 -89.69 -0.52 13.08 16 34 H 0.03 1.06 7.42 -2.39 -0.02 1.05 16 35 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.05 1.39 6.36 -2.38 -0.02 1.38 16 42 H 0.08 1.58 6.48 -2.39 -0.02 1.57 16 43 H 0.05 1.71 6.07 -2.39 -0.01 1.69 16 44 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.03 1.34 5.70 -2.39 -0.01 1.33 16 46 H 0.07 1.82 6.36 -2.39 -0.02 1.80 16 47 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 49 H 0.07 1.28 6.42 -2.39 -0.02 1.26 16 Total: -1.00 -58.60 354.16 4.07 -54.52 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: 0.37 Total: 28.70 kcal Atomic # 6 Polarization: -49.56 SS G_CDS: 3.97 Total: -45.59 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -2.29 Total: -83.83 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -58.60 4.07 -54.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226862004.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.081 kcal (2) G-P(sol) polarization free energy of solvation -58.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds