Wall clock time and date at job start Mon Mar 30 2020 07:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47601 * 2 1 4 4 H 1.09006 * 109.47059 * 54.99478 * 3 2 1 5 5 C 1.50697 * 109.47525 * 174.99816 * 3 2 1 6 6 H 1.08001 * 119.99596 * 119.99788 * 5 3 2 7 7 C 1.37870 * 120.00016 * 300.00137 * 5 3 2 8 8 N 1.31510 * 120.00157 * 180.02562 * 7 5 3 9 9 Si 1.86807 * 120.00202 * 359.97438 * 7 5 3 10 10 H 1.48493 * 109.47253 * 89.99686 * 9 7 5 11 11 H 1.48499 * 109.47386 * 210.00622 * 9 7 5 12 12 H 1.48503 * 109.46626 * 330.00058 * 9 7 5 13 13 N 1.46908 * 109.46924 * 295.00135 * 3 2 1 14 14 C 1.47938 * 110.99531 * 307.41122 * 13 3 2 15 15 C 1.53917 * 113.33250 * 192.18395 * 14 13 3 16 16 C 1.50545 * 112.93890 * 317.75757 * 15 14 13 17 17 C 1.54328 * 108.80427 * 91.73096 * 16 15 14 18 18 H 1.08997 * 109.06741 * 43.34951 * 17 16 15 19 19 C 1.53004 * 108.89669 * 162.15284 * 17 16 15 20 20 C 1.53003 * 109.46962 * 177.17717 * 19 17 16 21 21 C 1.53004 * 109.47050 * 297.17112 * 19 17 16 22 22 C 1.52999 * 109.47670 * 57.17488 * 19 17 16 23 23 C 1.45871 * 111.78582 * 282.68913 * 17 16 15 24 24 C 1.44300 * 110.99797 * 179.97438 * 13 3 2 25 25 H 1.08999 * 109.47306 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47055 * 300.00441 * 1 2 3 27 27 H 1.09001 * 109.47301 * 59.99972 * 1 2 3 28 28 H 1.08999 * 109.47055 * 239.99559 * 2 1 3 29 29 H 1.09003 * 109.46782 * 120.00081 * 2 1 3 30 30 H 0.97001 * 120.00498 * 180.02562 * 8 7 5 31 31 H 1.08997 * 108.71808 * 313.17881 * 14 13 3 32 32 H 1.09003 * 108.71162 * 71.19348 * 14 13 3 33 33 H 1.09001 * 108.78920 * 78.64519 * 15 14 13 34 34 H 1.09000 * 108.79382 * 196.86086 * 15 14 13 35 35 H 1.09001 * 109.57134 * 211.55912 * 16 15 14 36 36 H 1.08994 * 109.56789 * 331.94052 * 16 15 14 37 37 H 1.08995 * 109.47744 * 59.99697 * 20 19 17 38 38 H 1.08996 * 109.47242 * 180.02562 * 20 19 17 39 39 H 1.09003 * 109.46909 * 299.99274 * 20 19 17 40 40 H 1.08997 * 109.46898 * 66.37079 * 21 19 17 41 41 H 1.09001 * 109.47100 * 186.37042 * 21 19 17 42 42 H 1.08996 * 109.47213 * 306.36983 * 21 19 17 43 43 H 1.08995 * 109.46976 * 59.99496 * 22 19 17 44 44 H 1.08996 * 109.47538 * 179.97438 * 22 19 17 45 45 H 1.09000 * 109.46706 * 300.00313 * 22 19 17 46 46 H 1.09005 * 108.84802 * 300.78865 * 23 17 16 47 47 H 1.08996 * 108.84771 * 182.31824 * 23 17 16 48 48 H 1.08999 * 109.69250 * 101.64390 * 24 13 3 49 49 H 1.08993 * 109.69626 * 341.05326 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1472 1.8887 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 5.4539 0.8803 1.3363 9 14 3.0963 0.1099 2.5708 10 1 2.8743 -1.3260 2.2647 11 1 3.7940 0.2360 3.8756 12 1 1.7881 0.8094 2.6395 13 7 1.6515 2.0992 -1.2553 14 6 2.0734 1.2982 -2.4253 15 6 1.9654 2.0615 -3.7576 16 6 0.7006 2.8702 -3.8696 17 6 0.9738 4.2960 -3.3458 18 1 1.9343 4.6386 -3.7304 19 6 -0.1269 5.2298 -3.8535 20 6 0.0921 6.6330 -3.2843 21 6 -0.0824 5.2868 -5.3819 22 6 -1.4907 4.7034 -3.4022 23 6 1.0012 4.3413 -1.8881 24 6 2.1165 3.4648 -1.2899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 5.8770 0.4818 2.1129 31 1 3.1088 0.9890 -2.2825 32 1 1.4494 0.4062 -2.4819 33 1 2.8200 2.7320 -3.8483 34 1 1.9968 1.3435 -4.5771 35 1 0.3884 2.9172 -4.9129 36 1 -0.0839 2.4057 -3.2722 37 1 1.0637 7.0081 -3.6057 38 1 -0.6922 7.2981 -3.6456 39 1 0.0604 6.5923 -2.1955 40 1 -0.3498 4.3120 -5.7897 41 1 -0.7894 6.0361 -5.7382 42 1 0.9235 5.5530 -5.7064 43 1 -1.5223 4.6627 -2.3135 44 1 -2.2747 5.3689 -3.7635 45 1 -1.6466 3.7037 -3.8078 46 1 0.0400 3.9961 -1.5069 47 1 1.1555 5.3725 -1.5707 48 1 3.0096 3.5330 -1.9111 49 1 2.3453 3.8007 -0.2786 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227437538.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:08 Heat of formation + Delta-G solvation = -17.340751 kcal Electronic energy + Delta-G solvation = -22812.043653 eV Core-core repulsion = 19966.254211 eV Total energy + Delta-G solvation = -2845.789442 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.75630 -37.31858 -34.09847 -32.01182 -31.86259 -30.70029 -27.74110 -27.23192 -27.06446 -24.77318 -24.44428 -22.44756 -20.64865 -20.41718 -18.57469 -18.19941 -16.58735 -15.77482 -15.37587 -14.64493 -14.30692 -14.03201 -13.99457 -13.46969 -13.44237 -13.18596 -12.73498 -12.65419 -12.29723 -12.10078 -11.88538 -11.79260 -11.64672 -11.49390 -11.34153 -11.26508 -11.01893 -10.86547 -10.74227 -10.68752 -10.38218 -10.15370 -9.91941 -9.87052 -9.64879 -9.61887 -9.53774 -9.47492 -9.11232 -8.54444 -6.97836 -6.09932 -4.09745 3.26827 3.37969 3.40273 4.39152 4.78010 4.87337 4.95821 5.01133 5.21432 5.27056 5.45854 5.53604 5.64689 5.69647 5.77705 5.80544 5.86317 5.92436 5.93268 5.97327 6.03122 6.04385 6.08631 6.13999 6.21888 6.24386 6.25444 6.31303 6.34968 6.39938 6.52505 6.56085 6.67985 6.70507 6.72252 6.73807 6.80661 6.85702 6.91018 6.97355 7.06042 7.15937 7.35968 7.62681 8.23078 8.39429 8.49257 8.93492 9.54401 11.03138 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.027648 B = 0.005486 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.489232 B = 5102.785144 C = 5251.199784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 C 0.185 3.815 4 H 0.038 0.962 5 C -0.541 4.541 6 H 0.074 0.926 7 C 0.073 3.927 8 N -0.900 5.900 9 Si 0.887 3.113 10 H -0.279 1.279 11 H -0.299 1.299 12 H -0.264 1.264 13 N -0.532 5.532 14 C 0.063 3.937 15 C -0.119 4.119 16 C -0.103 4.103 17 C -0.065 4.065 18 H 0.057 0.943 19 C -0.067 4.067 20 C -0.144 4.144 21 C -0.141 4.141 22 C -0.141 4.141 23 C -0.117 4.117 24 C 0.079 3.921 25 H 0.032 0.968 26 H 0.041 0.959 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.045 0.955 30 H 0.263 0.737 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.047 0.953 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.047 0.953 42 H 0.051 0.949 43 H 0.059 0.941 44 H 0.044 0.956 45 H 0.057 0.943 46 H 0.068 0.932 47 H 0.053 0.947 48 H 0.032 0.968 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.922 6.416 -10.078 16.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.163 4.163 3 C 0.077 3.923 4 H 0.056 0.944 5 C -0.580 4.580 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.227 1.227 12 H -0.188 1.188 13 N -0.256 5.256 14 C -0.065 4.065 15 C -0.157 4.157 16 C -0.140 4.140 17 C -0.084 4.084 18 H 0.076 0.924 19 C -0.067 4.067 20 C -0.201 4.201 21 C -0.198 4.198 22 C -0.198 4.198 23 C -0.155 4.155 24 C -0.050 4.050 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.087 0.913 47 H 0.071 0.929 48 H 0.050 0.950 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.252 6.396 -9.989 17.053 hybrid contribution 0.661 -0.597 0.829 1.217 sum -11.591 5.799 -9.160 15.871 Atomic orbital electron populations 1.21737 0.97416 0.99231 1.01652 1.21985 0.94015 0.99636 1.00648 1.19786 0.94236 0.90248 0.88003 0.94419 1.21672 0.90733 1.38643 1.06904 0.90847 1.24990 0.94693 0.95395 0.97900 1.69918 1.08858 1.45238 1.29737 0.86857 0.80743 0.79792 0.80856 1.20644 1.22702 1.18840 1.61080 1.60621 1.01487 1.02363 1.22262 0.99726 0.95695 0.88824 1.21402 0.98079 0.98958 0.97281 1.21375 0.98318 0.94730 0.99626 1.20124 0.97055 0.94593 0.96610 0.92445 1.20619 0.95938 0.95193 0.94920 1.21962 1.00955 0.95818 1.01379 1.21921 1.01197 1.01309 0.95353 1.21921 0.95550 1.00659 1.01663 1.20762 1.00992 0.98888 0.94847 1.21473 0.94325 0.89117 1.00119 0.94935 0.93948 0.91973 0.92259 0.93682 0.92748 0.93662 0.92358 0.92958 0.92828 0.92920 0.90942 0.92987 0.93401 0.92011 0.92482 0.93386 0.92999 0.92193 0.93704 0.92441 0.91336 0.92860 0.94950 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.80 37.16 0.36 -2.22 16 2 C -0.13 -2.69 4.48 -26.73 -0.12 -2.81 16 3 C 0.18 4.24 1.17 -68.86 -0.08 4.16 16 4 H 0.04 0.92 7.13 -51.93 -0.37 0.55 16 5 C -0.54 -14.67 7.48 -34.44 -0.26 -14.92 16 6 H 0.07 2.19 7.13 -52.49 -0.37 1.82 16 7 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 8 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 9 Si 0.89 21.93 24.41 -169.99 -4.15 17.78 16 10 H -0.28 -6.78 6.83 56.52 0.39 -6.40 16 11 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.26 -6.26 6.53 56.52 0.37 -5.89 16 13 N -0.53 -10.40 3.48 -228.07 -0.79 -11.19 16 14 C 0.06 1.16 4.31 -2.77 -0.01 1.15 16 15 C -0.12 -1.82 5.28 -27.48 -0.14 -1.96 16 16 C -0.10 -1.39 3.85 -27.26 -0.11 -1.49 16 17 C -0.07 -0.86 1.15 -93.30 -0.11 -0.97 16 18 H 0.06 0.81 7.58 -51.93 -0.39 0.41 16 19 C -0.07 -0.74 0.57 -154.50 -0.09 -0.83 16 20 C -0.14 -1.53 7.92 37.16 0.29 -1.24 16 21 C -0.14 -1.42 8.07 37.16 0.30 -1.12 16 22 C -0.14 -1.54 7.81 37.16 0.29 -1.25 16 23 C -0.12 -1.75 4.09 -29.61 -0.12 -1.87 16 24 C 0.08 1.49 4.39 -4.72 -0.02 1.46 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 1.07 7.75 -51.93 -0.40 0.67 16 28 H 0.06 1.26 6.27 -51.93 -0.33 0.93 16 29 H 0.05 1.04 3.22 -51.93 -0.17 0.87 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.05 0.98 6.67 -51.93 -0.35 0.64 16 32 H 0.06 1.05 6.79 -51.93 -0.35 0.70 16 33 H 0.05 0.83 6.66 -51.93 -0.35 0.49 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.63 5.94 -51.93 -0.31 0.33 16 36 H 0.07 1.05 7.09 -51.93 -0.37 0.69 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.68 6.27 -51.93 -0.33 0.36 16 40 H 0.06 0.57 6.44 -51.93 -0.33 0.23 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.70 6.53 -51.93 -0.34 0.36 16 44 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.63 6.76 -51.93 -0.35 0.28 16 46 H 0.07 1.06 6.34 -51.93 -0.33 0.73 16 47 H 0.05 0.75 5.94 -51.93 -0.31 0.44 16 48 H 0.03 0.64 6.75 -51.93 -0.35 0.29 16 49 H 0.07 1.39 7.39 -51.93 -0.38 1.00 16 LS Contribution 336.21 15.07 5.07 5.07 Total: -1.00 -28.08 336.21 -8.05 -36.13 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -9.04 Total: 0.70 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 0.09 Total: -21.96 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: -0.02 Total: -37.72 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.15 Total: 17.78 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.08 -8.05 -36.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227437538.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.788 kcal (2) G-P(sol) polarization free energy of solvation -28.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds