Wall clock time and date at job start Mon Mar 30 2020 07:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47601 * 2 1 4 4 H 1.09006 * 109.47059 * 54.99478 * 3 2 1 5 5 C 1.50697 * 109.47525 * 174.99816 * 3 2 1 6 6 H 1.08001 * 119.99596 * 119.99788 * 5 3 2 7 7 C 1.37870 * 120.00016 * 300.00137 * 5 3 2 8 8 N 1.31510 * 120.00157 * 180.02562 * 7 5 3 9 9 Si 1.86807 * 120.00202 * 359.97438 * 7 5 3 10 10 H 1.48493 * 109.47253 * 89.99686 * 9 7 5 11 11 H 1.48499 * 109.47386 * 210.00622 * 9 7 5 12 12 H 1.48503 * 109.46626 * 330.00058 * 9 7 5 13 13 N 1.46908 * 109.46924 * 295.00135 * 3 2 1 14 14 C 1.47938 * 110.99531 * 307.41122 * 13 3 2 15 15 C 1.53917 * 113.33250 * 192.18395 * 14 13 3 16 16 C 1.50545 * 112.93890 * 317.75757 * 15 14 13 17 17 C 1.54328 * 108.80427 * 91.73096 * 16 15 14 18 18 H 1.08997 * 109.06741 * 43.34951 * 17 16 15 19 19 C 1.53004 * 108.89669 * 162.15284 * 17 16 15 20 20 C 1.53003 * 109.46962 * 177.17717 * 19 17 16 21 21 C 1.53004 * 109.47050 * 297.17112 * 19 17 16 22 22 C 1.52999 * 109.47670 * 57.17488 * 19 17 16 23 23 C 1.45871 * 111.78582 * 282.68913 * 17 16 15 24 24 C 1.44300 * 110.99797 * 179.97438 * 13 3 2 25 25 H 1.08999 * 109.47306 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47055 * 300.00441 * 1 2 3 27 27 H 1.09001 * 109.47301 * 59.99972 * 1 2 3 28 28 H 1.08999 * 109.47055 * 239.99559 * 2 1 3 29 29 H 1.09003 * 109.46782 * 120.00081 * 2 1 3 30 30 H 0.97001 * 120.00498 * 180.02562 * 8 7 5 31 31 H 1.08997 * 108.71808 * 313.17881 * 14 13 3 32 32 H 1.09003 * 108.71162 * 71.19348 * 14 13 3 33 33 H 1.09001 * 108.78920 * 78.64519 * 15 14 13 34 34 H 1.09000 * 108.79382 * 196.86086 * 15 14 13 35 35 H 1.09001 * 109.57134 * 211.55912 * 16 15 14 36 36 H 1.08994 * 109.56789 * 331.94052 * 16 15 14 37 37 H 1.08995 * 109.47744 * 59.99697 * 20 19 17 38 38 H 1.08996 * 109.47242 * 180.02562 * 20 19 17 39 39 H 1.09003 * 109.46909 * 299.99274 * 20 19 17 40 40 H 1.08997 * 109.46898 * 66.37079 * 21 19 17 41 41 H 1.09001 * 109.47100 * 186.37042 * 21 19 17 42 42 H 1.08996 * 109.47213 * 306.36983 * 21 19 17 43 43 H 1.08995 * 109.46976 * 59.99496 * 22 19 17 44 44 H 1.08996 * 109.47538 * 179.97438 * 22 19 17 45 45 H 1.09000 * 109.46706 * 300.00313 * 22 19 17 46 46 H 1.09005 * 108.84802 * 300.78865 * 23 17 16 47 47 H 1.08996 * 108.84771 * 182.31824 * 23 17 16 48 48 H 1.08999 * 109.69250 * 101.64390 * 24 13 3 49 49 H 1.08993 * 109.69626 * 341.05326 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1472 1.8887 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 5.4539 0.8803 1.3363 9 14 3.0963 0.1099 2.5708 10 1 2.8743 -1.3260 2.2647 11 1 3.7940 0.2360 3.8756 12 1 1.7881 0.8094 2.6395 13 7 1.6515 2.0992 -1.2553 14 6 2.0734 1.2982 -2.4253 15 6 1.9654 2.0615 -3.7576 16 6 0.7006 2.8702 -3.8696 17 6 0.9738 4.2960 -3.3458 18 1 1.9343 4.6386 -3.7304 19 6 -0.1269 5.2298 -3.8535 20 6 0.0921 6.6330 -3.2843 21 6 -0.0824 5.2868 -5.3819 22 6 -1.4907 4.7034 -3.4022 23 6 1.0012 4.3413 -1.8881 24 6 2.1165 3.4648 -1.2899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 5.8770 0.4818 2.1129 31 1 3.1088 0.9890 -2.2825 32 1 1.4494 0.4062 -2.4819 33 1 2.8200 2.7320 -3.8483 34 1 1.9968 1.3435 -4.5771 35 1 0.3884 2.9172 -4.9129 36 1 -0.0839 2.4057 -3.2722 37 1 1.0637 7.0081 -3.6057 38 1 -0.6922 7.2981 -3.6456 39 1 0.0604 6.5923 -2.1955 40 1 -0.3498 4.3120 -5.7897 41 1 -0.7894 6.0361 -5.7382 42 1 0.9235 5.5530 -5.7064 43 1 -1.5223 4.6627 -2.3135 44 1 -2.2747 5.3689 -3.7635 45 1 -1.6466 3.7037 -3.8078 46 1 0.0400 3.9961 -1.5069 47 1 1.1555 5.3725 -1.5707 48 1 3.0096 3.5330 -1.9111 49 1 2.3453 3.8007 -0.2786 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227437538.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:08 Heat of formation + Delta-G solvation = -32.941934 kcal Electronic energy + Delta-G solvation = -22812.720171 eV Core-core repulsion = 19966.254211 eV Total energy + Delta-G solvation = -2846.465960 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.99214 -38.78344 -35.58161 -34.05900 -33.27342 -32.03477 -29.23745 -28.33489 -28.05392 -26.28713 -25.77712 -24.18445 -22.07199 -21.81201 -20.28975 -19.23974 -18.55390 -17.42412 -16.64059 -16.31488 -15.55918 -15.50986 -15.11151 -15.08107 -14.57790 -14.54835 -14.28922 -13.97287 -13.77405 -13.62863 -13.31818 -13.04103 -12.85384 -12.71352 -12.61348 -12.52563 -12.35663 -12.29053 -12.00157 -11.92453 -11.91381 -11.72186 -11.44667 -11.34865 -11.16960 -11.14660 -11.00313 -10.75001 -10.71018 -10.61210 -8.73072 -8.32424 -6.35711 1.28272 1.33818 1.44469 2.29644 3.03516 3.33566 3.82210 3.87831 3.98903 4.17333 4.27864 4.38269 4.43161 4.46932 4.47617 4.56451 4.62810 4.65825 4.77754 4.84212 4.89947 4.94708 4.97304 5.00973 5.06543 5.07505 5.08290 5.13615 5.18230 5.21883 5.23579 5.26322 5.31881 5.34046 5.39001 5.46614 5.50995 5.51507 5.59460 5.60891 5.62598 5.64879 5.75864 5.85111 6.19280 6.47883 6.70113 6.77353 7.32794 8.84435 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.027648 B = 0.005486 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.489232 B = 5102.785144 C = 5251.199784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.125 4.125 3 C 0.188 3.812 4 H 0.029 0.971 5 C -0.534 4.534 6 H 0.029 0.971 7 C 0.014 3.986 8 N -0.950 5.950 9 Si 0.949 3.051 10 H -0.268 1.268 11 H -0.302 1.302 12 H -0.245 1.245 13 N -0.517 5.517 14 C 0.066 3.934 15 C -0.113 4.113 16 C -0.096 4.096 17 C -0.065 4.065 18 H 0.047 0.953 19 C -0.062 4.062 20 C -0.144 4.144 21 C -0.139 4.139 22 C -0.139 4.139 23 C -0.101 4.101 24 C 0.079 3.921 25 H 0.056 0.944 26 H 0.044 0.956 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.031 0.969 30 H 0.263 0.737 31 H 0.002 0.998 32 H 0.070 0.930 33 H 0.038 0.962 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.048 0.952 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.048 0.952 43 H 0.050 0.950 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.071 0.929 47 H 0.062 0.938 48 H 0.011 0.989 49 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.315 6.459 -11.124 20.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.163 4.163 3 C 0.079 3.921 4 H 0.047 0.953 5 C -0.573 4.573 6 H 0.047 0.953 7 C -0.184 4.184 8 N -0.591 5.591 9 Si 0.776 3.224 10 H -0.194 1.194 11 H -0.230 1.230 12 H -0.168 1.168 13 N -0.240 5.240 14 C -0.062 4.062 15 C -0.151 4.151 16 C -0.133 4.133 17 C -0.083 4.083 18 H 0.066 0.934 19 C -0.062 4.062 20 C -0.202 4.202 21 C -0.196 4.196 22 C -0.196 4.196 23 C -0.139 4.139 24 C -0.050 4.050 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.020 0.980 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.089 0.911 47 H 0.081 0.919 48 H 0.029 0.971 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -15.670 6.450 -11.058 20.234 hybrid contribution 1.817 -0.551 1.079 2.184 sum -13.853 5.899 -9.978 18.063 Atomic orbital electron populations 1.21645 0.94083 1.01080 1.02254 1.21901 0.96910 0.97579 0.99863 1.19672 0.91075 0.91912 0.89415 0.95329 1.21924 0.93010 1.37016 1.05318 0.95295 1.25838 0.95733 0.96262 1.00536 1.70072 1.10917 1.47235 1.30830 0.85845 0.79630 0.79521 0.77384 1.19398 1.23011 1.16849 1.61209 1.59654 1.01531 1.01605 1.22295 0.97208 0.96599 0.90105 1.21368 0.98859 0.99195 0.95663 1.21335 0.96787 0.94093 1.01066 1.20084 0.97743 0.95391 0.95122 0.93436 1.20560 0.95111 0.94680 0.95818 1.21963 1.01399 0.95855 1.00942 1.21899 1.01486 1.02025 0.94167 1.21904 0.95561 1.01081 1.01075 1.20619 0.98950 0.98227 0.96085 1.21508 0.95379 0.89611 0.98500 0.92482 0.93688 0.91033 0.92553 0.95030 0.92761 0.97965 0.91213 0.94284 0.90756 0.90521 0.91254 0.93265 0.91936 0.92694 0.92036 0.92090 0.93283 0.93108 0.92295 0.92317 0.91060 0.91922 0.97082 0.94282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.39 9.80 71.98 0.71 -3.69 16 2 C -0.12 -5.21 4.48 30.59 0.14 -5.07 16 3 C 0.19 8.69 1.17 44.16 0.05 8.74 16 4 H 0.03 1.39 7.13 -2.38 -0.02 1.38 16 5 C -0.53 -30.31 7.48 25.60 0.19 -30.12 16 6 H 0.03 1.86 7.13 -2.91 -0.02 1.83 16 7 C 0.01 0.81 5.45 84.65 0.46 1.27 16 8 N -0.95 -60.22 13.96 21.44 0.30 -59.92 16 9 Si 0.95 45.70 24.41 68.60 1.67 47.37 16 10 H -0.27 -12.33 6.83 99.48 0.68 -11.65 16 11 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 12 H -0.24 -10.94 6.53 99.48 0.65 -10.29 16 13 N -0.52 -20.37 3.48 -875.48 -3.04 -23.41 16 14 C 0.07 2.45 4.31 86.41 0.37 2.82 16 15 C -0.11 -3.34 5.28 30.11 0.16 -3.18 16 16 C -0.10 -2.34 3.85 30.25 0.12 -2.23 16 17 C -0.06 -1.61 1.15 -12.53 -0.01 -1.62 16 18 H 0.05 1.29 7.58 -2.39 -0.02 1.27 16 19 C -0.06 -1.20 0.57 -52.18 -0.03 -1.23 16 20 C -0.14 -2.74 7.92 71.98 0.57 -2.17 16 21 C -0.14 -2.35 8.07 71.98 0.58 -1.77 16 22 C -0.14 -2.58 7.81 71.98 0.56 -2.02 16 23 C -0.10 -2.94 4.09 28.73 0.12 -2.82 16 24 C 0.08 3.08 4.39 87.11 0.38 3.47 16 25 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.07 2.22 7.75 -2.39 -0.02 2.20 16 28 H 0.06 2.35 6.27 -2.39 -0.01 2.34 16 29 H 0.03 1.40 3.22 -2.39 -0.01 1.40 16 30 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 31 H 0.00 0.09 6.67 -2.39 -0.02 0.07 16 32 H 0.07 2.44 6.79 -2.39 -0.02 2.42 16 33 H 0.04 1.25 6.66 -2.39 -0.02 1.24 16 34 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.08 1.56 5.94 -2.39 -0.01 1.55 16 36 H 0.07 1.80 7.09 -2.39 -0.02 1.78 16 37 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.05 1.11 6.27 -2.39 -0.01 1.09 16 40 H 0.06 0.99 6.44 -2.39 -0.02 0.98 16 41 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.05 1.04 6.53 -2.39 -0.02 1.02 16 44 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.06 1.08 6.76 -2.39 -0.02 1.06 16 46 H 0.07 2.08 6.34 -2.38 -0.02 2.06 16 47 H 0.06 1.72 5.94 -2.39 -0.01 1.70 16 48 H 0.01 0.46 6.75 -2.39 -0.02 0.45 16 49 H 0.04 1.70 7.39 -2.39 -0.02 1.69 16 Total: -1.00 -63.55 336.21 4.10 -59.44 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.81 Total: 16.14 kcal Atomic # 6 Polarization: -43.98 SS G_CDS: 4.36 Total: -39.62 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -2.74 Total: -83.34 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.67 Total: 47.37 kcal Total: -63.55 4.10 -59.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227437538.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.503 kcal (2) G-P(sol) polarization free energy of solvation -63.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds