Wall clock time and date at job start Mon Mar 30 2020 07:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47334 * 2 1 4 4 H 1.09008 * 109.46672 * 305.92338 * 3 2 1 5 5 C 1.50695 * 109.47272 * 185.92353 * 3 2 1 6 6 H 1.08008 * 119.99439 * 239.99876 * 5 3 2 7 7 C 1.37877 * 120.00366 * 59.99433 * 5 3 2 8 8 N 1.31513 * 119.99633 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00080 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47419 * 270.00294 * 9 7 5 11 11 H 1.48499 * 109.47225 * 30.00399 * 9 7 5 12 12 H 1.48494 * 109.47126 * 150.00401 * 9 7 5 13 13 N 1.46900 * 109.47092 * 65.91623 * 3 2 1 14 14 C 1.47948 * 110.99646 * 52.94126 * 13 3 2 15 15 C 1.53922 * 113.32854 * 192.18441 * 14 13 3 16 16 C 1.50536 * 112.94095 * 317.75057 * 15 14 13 17 17 C 1.54530 * 108.86423 * 91.75233 * 16 15 14 18 18 H 1.09002 * 109.04176 * 43.25634 * 17 16 15 19 19 C 1.52997 * 109.03890 * 162.20547 * 17 16 15 20 20 C 1.52997 * 109.47486 * 60.00034 * 19 17 16 21 21 C 1.53000 * 109.47058 * 179.97438 * 19 17 16 22 22 C 1.53005 * 109.47119 * 299.99578 * 19 17 16 23 23 C 1.45880 * 111.66686 * 282.76536 * 17 16 15 24 24 C 1.44298 * 111.00092 * 285.52768 * 13 3 2 25 25 H 1.09001 * 109.47107 * 289.37286 * 1 2 3 26 26 H 1.09004 * 109.47198 * 49.37763 * 1 2 3 27 27 H 1.09004 * 109.46953 * 169.37140 * 1 2 3 28 28 H 1.09003 * 109.47071 * 239.99881 * 2 1 3 29 29 H 1.08998 * 109.46710 * 120.00170 * 2 1 3 30 30 H 0.97003 * 119.99460 * 180.02562 * 8 7 5 31 31 H 1.09000 * 108.71087 * 313.17998 * 14 13 3 32 32 H 1.08997 * 108.71312 * 71.31912 * 14 13 3 33 33 H 1.08999 * 108.78596 * 78.64441 * 15 14 13 34 34 H 1.08999 * 108.78809 * 196.97415 * 15 14 13 35 35 H 1.08998 * 109.57201 * 211.56385 * 16 15 14 36 36 H 1.08999 * 109.57211 * 331.93975 * 16 15 14 37 37 H 1.08995 * 109.46919 * 59.99685 * 20 19 17 38 38 H 1.08998 * 109.47545 * 179.97438 * 20 19 17 39 39 H 1.09001 * 109.46882 * 300.00200 * 20 19 17 40 40 H 1.09006 * 109.47130 * 60.00009 * 21 19 17 41 41 H 1.08996 * 109.47463 * 179.97438 * 21 19 17 42 42 H 1.09004 * 109.47321 * 300.00273 * 21 19 17 43 43 H 1.08999 * 109.46639 * 60.00678 * 22 19 17 44 44 H 1.08998 * 109.47023 * 179.97438 * 22 19 17 45 45 H 1.09001 * 109.46757 * 300.00481 * 22 19 17 46 46 H 1.09002 * 108.84166 * 182.31265 * 23 17 16 47 47 H 1.08995 * 108.84711 * 300.78348 * 23 17 16 48 48 H 1.08994 * 109.69800 * 341.05594 * 24 13 3 49 49 H 1.09001 * 109.69808 * 101.65223 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5927 1.9860 -0.8323 5 6 3.5399 1.4450 -0.1466 6 1 4.1569 1.8854 0.6227 7 6 4.1245 0.8849 -1.2627 8 7 3.3731 0.3490 -2.1996 9 14 5.9836 0.8874 -1.4440 10 1 6.4108 2.1241 -2.1465 11 1 6.6122 0.8397 -0.0995 12 1 6.4059 -0.2994 -2.2303 13 7 1.6705 2.0925 1.2644 14 6 2.1175 1.2895 2.4238 15 6 1.5090 1.7552 3.7588 16 6 1.4830 3.2536 3.9007 17 6 0.1306 3.7822 3.3720 18 1 -0.6695 3.1362 3.7334 19 6 -0.0937 5.1992 3.9036 20 6 1.0386 6.1093 3.4235 21 6 -1.4307 5.7327 3.3851 22 6 -0.1132 5.1729 5.4333 23 6 0.0961 3.8099 1.9138 24 6 0.2636 2.4122 1.2896 25 1 -0.3633 0.3409 0.9695 26 1 -0.3634 0.6691 -0.7800 27 1 -0.3633 -1.0101 -0.1896 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.7844 -0.0453 -2.9846 31 1 1.8391 0.2490 2.2567 32 1 3.2032 1.3530 2.4955 33 1 0.4889 1.3780 3.8301 34 1 2.0955 1.3368 4.5768 35 1 1.5948 3.5229 4.9510 36 1 2.2970 3.6894 3.3215 37 1 1.0524 6.1279 2.3338 38 1 0.8786 7.1189 3.8018 39 1 1.9913 5.7293 3.7924 40 1 -2.2376 5.0844 3.7268 41 1 -1.5907 6.7420 3.7642 42 1 -1.4164 5.7514 2.2953 43 1 0.8396 4.7931 5.8022 44 1 -0.2725 6.1825 5.8120 45 1 -0.9199 4.5245 5.7752 46 1 -0.8582 4.2270 1.5922 47 1 0.8998 4.4527 1.5548 48 1 -0.1310 2.4139 0.2736 49 1 -0.2699 1.6754 1.8902 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227437547.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:10 Heat of formation + Delta-G solvation = -11.872041 kcal Electronic energy + Delta-G solvation = -22777.351608 eV Core-core repulsion = 19931.799307 eV Total energy + Delta-G solvation = -2845.552301 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.78761 -37.38375 -33.92914 -32.16656 -31.39632 -30.18773 -27.61271 -27.30865 -27.13319 -24.61336 -24.44884 -22.63507 -20.66737 -20.10070 -18.53369 -18.14613 -16.27184 -15.62266 -15.08536 -14.59113 -14.54999 -14.15877 -13.79922 -13.64634 -13.27920 -12.93932 -12.72758 -12.50666 -12.20606 -11.95797 -11.83134 -11.63545 -11.47620 -11.27781 -11.19837 -11.04758 -10.85913 -10.81599 -10.71295 -10.62531 -10.36975 -10.23054 -10.02533 -9.88402 -9.76544 -9.57378 -9.48072 -9.27305 -8.78187 -8.28782 -6.81410 -5.95138 -3.98162 3.34116 3.40579 3.44081 4.46403 4.81056 4.89045 4.97800 5.10959 5.27898 5.35635 5.48736 5.55058 5.66242 5.71680 5.77258 5.80133 5.83361 5.87181 5.98076 5.99355 6.10677 6.14682 6.16708 6.19351 6.25661 6.27167 6.32568 6.35729 6.42684 6.47406 6.51665 6.59539 6.62841 6.70449 6.80447 6.85067 6.92062 6.96720 7.05027 7.12582 7.32069 7.64216 7.83390 7.95329 8.30474 8.51341 8.78934 9.09401 9.66842 11.11238 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.024128 B = 0.005437 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.188924 B = 5148.919793 C = 5518.378973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.157 4.157 3 C 0.221 3.779 4 H 0.037 0.963 5 C -0.494 4.494 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.275 1.275 12 H -0.289 1.289 13 N -0.536 5.536 14 C 0.065 3.935 15 C -0.119 4.119 16 C -0.106 4.106 17 C -0.063 4.063 18 H 0.054 0.946 19 C -0.066 4.066 20 C -0.142 4.142 21 C -0.143 4.143 22 C -0.142 4.142 23 C -0.119 4.119 24 C 0.066 3.934 25 H 0.043 0.957 26 H 0.044 0.956 27 H 0.029 0.971 28 H 0.097 0.903 29 H 0.040 0.960 30 H 0.259 0.741 31 H 0.034 0.966 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.044 0.956 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.047 0.953 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.047 0.953 45 H 0.049 0.951 46 H 0.050 0.950 47 H 0.073 0.927 48 H 0.060 0.940 49 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.764 6.691 11.624 15.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.196 4.196 3 C 0.115 3.885 4 H 0.055 0.945 5 C -0.533 4.533 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.200 1.200 12 H -0.215 1.215 13 N -0.260 5.260 14 C -0.062 4.062 15 C -0.157 4.157 16 C -0.144 4.144 17 C -0.082 4.082 18 H 0.073 0.927 19 C -0.066 4.066 20 C -0.199 4.199 21 C -0.201 4.201 22 C -0.199 4.199 23 C -0.157 4.157 24 C -0.063 4.063 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.048 0.952 28 H 0.115 0.885 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.091 0.909 48 H 0.079 0.921 49 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -7.508 7.027 11.477 15.410 hybrid contribution 0.511 -0.908 -0.260 1.074 sum -6.997 6.119 11.217 14.567 Atomic orbital electron populations 1.22179 0.99606 0.99351 1.00122 1.22260 0.91709 1.02815 1.02813 1.19367 0.95446 0.88462 0.85196 0.94493 1.21169 0.91241 1.36176 1.04671 0.92110 1.24925 0.97912 0.95618 0.95918 1.69881 1.34569 1.39589 1.09467 0.86573 0.85949 0.77320 0.77982 1.20817 1.20036 1.21503 1.60985 1.13868 1.47657 1.03491 1.22297 1.00110 0.95190 0.88605 1.21429 1.00163 0.96524 0.97601 1.21443 0.97840 0.95413 0.99664 1.20115 0.97280 0.94334 0.96430 0.92748 1.20604 0.95250 0.95869 0.94911 1.21929 0.98211 0.98036 1.01734 1.21952 0.96557 1.00065 1.01476 1.21947 1.01741 1.00864 0.95357 1.20795 1.01134 0.98969 0.94836 1.21930 0.90647 0.94581 0.99159 0.93784 0.93712 0.95189 0.88491 0.94169 0.93151 0.94770 0.91441 0.93434 0.92836 0.92827 0.90568 0.92034 0.93708 0.92338 0.93130 0.93344 0.92067 0.92224 0.93374 0.93145 0.93162 0.90853 0.92143 0.95121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 8.50 37.16 0.32 -2.78 16 2 C -0.16 -3.67 4.91 -26.73 -0.13 -3.80 16 3 C 0.22 5.42 1.88 -68.87 -0.13 5.29 16 4 H 0.04 1.01 7.60 -51.92 -0.39 0.62 16 5 C -0.49 -13.34 8.11 -34.44 -0.28 -13.62 16 6 H 0.06 1.66 7.19 -52.48 -0.38 1.29 16 7 C 0.06 1.55 5.29 -17.82 -0.09 1.46 16 8 N -0.90 -25.34 11.29 55.43 0.63 -24.72 16 9 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 N -0.54 -11.04 3.90 -228.04 -0.89 -11.93 16 14 C 0.07 1.25 4.82 -2.77 -0.01 1.24 16 15 C -0.12 -1.83 5.27 -27.48 -0.14 -1.98 16 16 C -0.11 -1.51 3.97 -27.16 -0.11 -1.62 16 17 C -0.06 -0.85 1.16 -93.19 -0.11 -0.95 16 18 H 0.05 0.74 7.59 -51.93 -0.39 0.35 16 19 C -0.07 -0.76 0.57 -154.51 -0.09 -0.85 16 20 C -0.14 -1.69 7.81 37.16 0.29 -1.40 16 21 C -0.14 -1.54 8.01 37.16 0.30 -1.24 16 22 C -0.14 -1.47 8.18 37.16 0.30 -1.17 16 23 C -0.12 -1.82 4.10 -29.58 -0.12 -1.94 16 24 C 0.07 1.18 3.58 -4.70 -0.02 1.17 16 25 H 0.04 0.81 5.10 -51.93 -0.26 0.54 16 26 H 0.04 0.89 7.39 -51.93 -0.38 0.51 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.10 2.58 5.93 -51.93 -0.31 2.28 16 29 H 0.04 0.94 5.70 -51.93 -0.30 0.64 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.03 0.69 5.32 -51.93 -0.28 0.42 16 32 H 0.07 1.40 7.25 -51.93 -0.38 1.03 16 33 H 0.05 0.71 6.66 -51.93 -0.35 0.37 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.68 5.70 -51.93 -0.30 0.38 16 36 H 0.08 1.24 7.11 -51.93 -0.37 0.87 16 37 H 0.06 0.79 6.47 -51.93 -0.34 0.45 16 38 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.72 6.83 -51.93 -0.35 0.37 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.68 6.30 -51.93 -0.33 0.36 16 43 H 0.06 0.62 6.06 -51.93 -0.31 0.31 16 44 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.05 0.70 5.98 -51.93 -0.31 0.39 16 47 H 0.07 1.23 6.26 -51.93 -0.33 0.91 16 48 H 0.06 1.15 5.98 -51.93 -0.31 0.84 16 49 H 0.03 0.54 4.98 -51.93 -0.26 0.28 16 LS Contribution 334.92 15.07 5.05 5.05 Total: -1.00 -26.75 334.92 -8.98 -35.73 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -8.71 Total: 1.70 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: -0.03 Total: -22.19 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: -0.26 Total: -36.64 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -26.75 -8.98 -35.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227437547.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.856 kcal (2) G-P(sol) polarization free energy of solvation -26.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds