Wall clock time and date at job start Mon Mar 30 2020 07:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47334 * 2 1 4 4 H 1.09008 * 109.46672 * 305.92338 * 3 2 1 5 5 C 1.50695 * 109.47272 * 185.92353 * 3 2 1 6 6 H 1.08008 * 119.99439 * 239.99876 * 5 3 2 7 7 C 1.37877 * 120.00366 * 59.99433 * 5 3 2 8 8 N 1.31513 * 119.99633 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00080 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47419 * 270.00294 * 9 7 5 11 11 H 1.48499 * 109.47225 * 30.00399 * 9 7 5 12 12 H 1.48494 * 109.47126 * 150.00401 * 9 7 5 13 13 N 1.46900 * 109.47092 * 65.91623 * 3 2 1 14 14 C 1.47948 * 110.99646 * 52.94126 * 13 3 2 15 15 C 1.53922 * 113.32854 * 192.18441 * 14 13 3 16 16 C 1.50536 * 112.94095 * 317.75057 * 15 14 13 17 17 C 1.54530 * 108.86423 * 91.75233 * 16 15 14 18 18 H 1.09002 * 109.04176 * 43.25634 * 17 16 15 19 19 C 1.52997 * 109.03890 * 162.20547 * 17 16 15 20 20 C 1.52997 * 109.47486 * 60.00034 * 19 17 16 21 21 C 1.53000 * 109.47058 * 179.97438 * 19 17 16 22 22 C 1.53005 * 109.47119 * 299.99578 * 19 17 16 23 23 C 1.45880 * 111.66686 * 282.76536 * 17 16 15 24 24 C 1.44298 * 111.00092 * 285.52768 * 13 3 2 25 25 H 1.09001 * 109.47107 * 289.37286 * 1 2 3 26 26 H 1.09004 * 109.47198 * 49.37763 * 1 2 3 27 27 H 1.09004 * 109.46953 * 169.37140 * 1 2 3 28 28 H 1.09003 * 109.47071 * 239.99881 * 2 1 3 29 29 H 1.08998 * 109.46710 * 120.00170 * 2 1 3 30 30 H 0.97003 * 119.99460 * 180.02562 * 8 7 5 31 31 H 1.09000 * 108.71087 * 313.17998 * 14 13 3 32 32 H 1.08997 * 108.71312 * 71.31912 * 14 13 3 33 33 H 1.08999 * 108.78596 * 78.64441 * 15 14 13 34 34 H 1.08999 * 108.78809 * 196.97415 * 15 14 13 35 35 H 1.08998 * 109.57201 * 211.56385 * 16 15 14 36 36 H 1.08999 * 109.57211 * 331.93975 * 16 15 14 37 37 H 1.08995 * 109.46919 * 59.99685 * 20 19 17 38 38 H 1.08998 * 109.47545 * 179.97438 * 20 19 17 39 39 H 1.09001 * 109.46882 * 300.00200 * 20 19 17 40 40 H 1.09006 * 109.47130 * 60.00009 * 21 19 17 41 41 H 1.08996 * 109.47463 * 179.97438 * 21 19 17 42 42 H 1.09004 * 109.47321 * 300.00273 * 21 19 17 43 43 H 1.08999 * 109.46639 * 60.00678 * 22 19 17 44 44 H 1.08998 * 109.47023 * 179.97438 * 22 19 17 45 45 H 1.09001 * 109.46757 * 300.00481 * 22 19 17 46 46 H 1.09002 * 108.84166 * 182.31265 * 23 17 16 47 47 H 1.08995 * 108.84711 * 300.78348 * 23 17 16 48 48 H 1.08994 * 109.69800 * 341.05594 * 24 13 3 49 49 H 1.09001 * 109.69808 * 101.65223 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5927 1.9860 -0.8323 5 6 3.5399 1.4450 -0.1466 6 1 4.1569 1.8854 0.6227 7 6 4.1245 0.8849 -1.2627 8 7 3.3731 0.3490 -2.1996 9 14 5.9836 0.8874 -1.4440 10 1 6.4108 2.1241 -2.1465 11 1 6.6122 0.8397 -0.0995 12 1 6.4059 -0.2994 -2.2303 13 7 1.6705 2.0925 1.2644 14 6 2.1175 1.2895 2.4238 15 6 1.5090 1.7552 3.7588 16 6 1.4830 3.2536 3.9007 17 6 0.1306 3.7822 3.3720 18 1 -0.6695 3.1362 3.7334 19 6 -0.0937 5.1992 3.9036 20 6 1.0386 6.1093 3.4235 21 6 -1.4307 5.7327 3.3851 22 6 -0.1132 5.1729 5.4333 23 6 0.0961 3.8099 1.9138 24 6 0.2636 2.4122 1.2896 25 1 -0.3633 0.3409 0.9695 26 1 -0.3634 0.6691 -0.7800 27 1 -0.3633 -1.0101 -0.1896 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.7844 -0.0453 -2.9846 31 1 1.8391 0.2490 2.2567 32 1 3.2032 1.3530 2.4955 33 1 0.4889 1.3780 3.8301 34 1 2.0955 1.3368 4.5768 35 1 1.5948 3.5229 4.9510 36 1 2.2970 3.6894 3.3215 37 1 1.0524 6.1279 2.3338 38 1 0.8786 7.1189 3.8018 39 1 1.9913 5.7293 3.7924 40 1 -2.2376 5.0844 3.7268 41 1 -1.5907 6.7420 3.7642 42 1 -1.4164 5.7514 2.2953 43 1 0.8396 4.7931 5.8022 44 1 -0.2725 6.1825 5.8120 45 1 -0.9199 4.5245 5.7752 46 1 -0.8582 4.2270 1.5922 47 1 0.8998 4.4527 1.5548 48 1 -0.1310 2.4139 0.2736 49 1 -0.2699 1.6754 1.8902 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227437547.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:09 Heat of formation + Delta-G solvation = -24.993522 kcal Electronic energy + Delta-G solvation = -22777.920598 eV Core-core repulsion = 19931.799307 eV Total energy + Delta-G solvation = -2846.121291 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.05070 -38.83829 -35.48311 -33.94149 -32.79612 -31.78466 -29.19732 -28.43163 -28.08460 -26.18111 -25.83924 -24.37168 -21.91513 -21.75585 -20.13668 -19.18519 -18.23303 -17.24587 -16.43264 -16.31306 -15.92024 -15.45542 -15.11316 -14.74882 -14.65764 -14.42854 -14.13743 -13.86052 -13.57539 -13.49664 -13.11899 -12.85642 -12.80737 -12.72091 -12.56218 -12.52850 -12.39665 -12.22629 -12.14827 -12.09138 -11.80423 -11.75809 -11.65258 -11.20603 -11.19482 -10.98320 -10.77661 -10.71662 -10.63491 -10.37896 -8.49518 -8.06417 -6.16419 1.41443 1.42364 1.52240 2.44660 3.21215 3.47103 3.83801 3.88739 3.98202 4.16729 4.28013 4.38051 4.39576 4.49753 4.57866 4.60161 4.66698 4.71451 4.78831 4.80831 4.90809 4.94796 4.97393 4.98720 5.01834 5.07249 5.15978 5.17254 5.21394 5.23377 5.28935 5.29733 5.35150 5.38429 5.42268 5.48629 5.57856 5.60362 5.62394 5.68382 5.74507 5.82141 5.86506 5.95102 6.34600 6.63661 7.00282 7.03751 7.53041 8.98448 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.024128 B = 0.005437 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.188924 B = 5148.919793 C = 5518.378973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.149 4.149 3 C 0.228 3.772 4 H 0.001 0.999 5 C -0.509 4.509 6 H 0.050 0.950 7 C 0.011 3.989 8 N -0.920 5.920 9 Si 0.953 3.047 10 H -0.279 1.279 11 H -0.271 1.271 12 H -0.285 1.285 13 N -0.541 5.541 14 C 0.069 3.931 15 C -0.111 4.111 16 C -0.102 4.102 17 C -0.061 4.061 18 H 0.063 0.937 19 C -0.063 4.063 20 C -0.141 4.141 21 C -0.142 4.142 22 C -0.139 4.139 23 C -0.109 4.109 24 C 0.066 3.934 25 H 0.062 0.938 26 H 0.038 0.962 27 H 0.044 0.956 28 H 0.063 0.937 29 H 0.038 0.962 30 H 0.259 0.741 31 H 0.023 0.977 32 H 0.043 0.957 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.051 0.949 37 H 0.045 0.955 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.066 0.934 47 H 0.053 0.947 48 H 0.044 0.956 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.683 7.328 13.764 17.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.188 4.188 3 C 0.121 3.879 4 H 0.018 0.982 5 C -0.547 4.547 6 H 0.069 0.931 7 C -0.187 4.187 8 N -0.560 5.560 9 Si 0.780 3.220 10 H -0.205 1.205 11 H -0.195 1.195 12 H -0.211 1.211 13 N -0.265 5.265 14 C -0.059 4.059 15 C -0.149 4.149 16 C -0.139 4.139 17 C -0.079 4.079 18 H 0.081 0.919 19 C -0.063 4.063 20 C -0.198 4.198 21 C -0.199 4.199 22 C -0.196 4.196 23 C -0.146 4.146 24 C -0.062 4.062 25 H 0.080 0.920 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.084 0.916 47 H 0.072 0.928 48 H 0.063 0.937 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.436 7.673 13.631 17.772 hybrid contribution 0.797 -1.084 -0.939 1.641 sum -7.639 6.589 12.691 16.212 Atomic orbital electron populations 1.22034 0.96738 1.00281 1.00967 1.22066 0.94252 1.01550 1.00976 1.19079 0.93976 0.88853 0.86015 0.98159 1.21429 0.92737 1.36053 1.04524 0.93131 1.25637 1.02006 0.95361 0.95686 1.70015 1.36106 1.40125 1.09785 0.85628 0.81067 0.77339 0.77996 1.20476 1.19546 1.21051 1.60898 1.15788 1.47368 1.02447 1.22281 0.99014 0.94528 0.90060 1.21376 1.00644 0.97470 0.95411 1.21405 0.97478 0.94338 1.00691 1.20076 0.96974 0.95974 0.94868 0.91914 1.20564 0.95469 0.94256 0.95974 1.21913 0.98157 0.99045 1.00698 1.21936 0.96134 1.00937 1.00930 1.21913 1.01964 1.01803 0.93928 1.20694 1.01198 0.96554 0.96203 1.21974 0.88901 0.96530 0.98819 0.91974 0.94284 0.93660 0.91852 0.94338 0.93209 0.95932 0.93856 0.92338 0.91074 0.90540 0.93043 0.93642 0.92289 0.93122 0.92410 0.92158 0.92929 0.92326 0.92269 0.92438 0.91584 0.92828 0.93705 0.94060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.66 8.50 71.98 0.61 -5.05 16 2 C -0.15 -7.16 4.91 30.59 0.15 -7.01 16 3 C 0.23 11.57 1.88 44.17 0.08 11.66 16 4 H 0.00 0.03 7.60 -2.38 -0.02 0.01 16 5 C -0.51 -28.43 8.11 25.60 0.21 -28.23 16 6 H 0.05 2.86 7.19 -2.91 -0.02 2.84 16 7 C 0.01 0.62 5.29 84.65 0.45 1.07 16 8 N -0.92 -53.60 11.29 21.45 0.24 -53.36 16 9 Si 0.95 44.66 29.54 68.60 2.03 46.69 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 13 N -0.54 -22.71 3.90 -875.39 -3.42 -26.13 16 14 C 0.07 2.63 4.82 86.41 0.42 3.05 16 15 C -0.11 -3.20 5.27 30.11 0.16 -3.04 16 16 C -0.10 -2.70 3.97 30.32 0.12 -2.58 16 17 C -0.06 -1.48 1.16 -12.46 -0.01 -1.50 16 18 H 0.06 1.49 7.59 -2.39 -0.02 1.47 16 19 C -0.06 -1.28 0.57 -52.18 -0.03 -1.31 16 20 C -0.14 -3.13 7.81 71.98 0.56 -2.57 16 21 C -0.14 -2.65 8.01 71.98 0.58 -2.07 16 22 C -0.14 -2.39 8.18 71.98 0.59 -1.80 16 23 C -0.11 -3.20 4.10 28.75 0.12 -3.08 16 24 C 0.07 2.35 3.58 87.12 0.31 2.67 16 25 H 0.06 2.21 5.10 -2.39 -0.01 2.20 16 26 H 0.04 1.56 7.39 -2.39 -0.02 1.55 16 27 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 28 H 0.06 3.49 5.93 -2.39 -0.01 3.48 16 29 H 0.04 1.83 5.70 -2.39 -0.01 1.82 16 30 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 31 H 0.02 0.92 5.32 -2.39 -0.01 0.90 16 32 H 0.04 1.84 7.25 -2.39 -0.02 1.82 16 33 H 0.06 1.58 6.66 -2.39 -0.02 1.56 16 34 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.08 1.71 5.70 -2.39 -0.01 1.69 16 36 H 0.05 1.64 7.11 -2.39 -0.02 1.63 16 37 H 0.04 1.14 6.47 -2.39 -0.02 1.13 16 38 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 39 H 0.05 1.19 6.83 -2.39 -0.02 1.17 16 40 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.05 1.06 6.30 -2.38 -0.02 1.05 16 43 H 0.06 1.02 6.06 -2.39 -0.01 1.01 16 44 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.07 1.75 5.98 -2.39 -0.01 1.73 16 47 H 0.05 1.81 6.26 -2.39 -0.01 1.80 16 48 H 0.04 1.72 5.98 -2.39 -0.01 1.71 16 49 H 0.04 1.38 4.98 -2.39 -0.01 1.37 16 Total: -1.00 -59.03 334.92 4.07 -54.96 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.91 Total: 17.63 kcal Atomic # 6 Polarization: -44.11 SS G_CDS: 4.31 Total: -39.80 kcal Atomic # 7 Polarization: -76.31 SS G_CDS: -3.17 Total: -79.49 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -59.03 4.07 -54.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227437547.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.971 kcal (2) G-P(sol) polarization free energy of solvation -59.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds