Wall clock time and date at job start Mon Mar 30 2020 07:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08995 * 110.01803 * 53.60587 * 3 2 1 5 5 C 1.54261 * 110.02845 * 292.16537 * 3 2 1 6 6 C 1.54897 * 104.19535 * 217.10405 * 5 3 2 7 7 C 1.54896 * 102.74603 * 37.94567 * 6 5 3 8 8 H 1.08999 * 110.48179 * 203.38379 * 7 6 5 9 9 N 1.46897 * 110.48824 * 80.73389 * 7 6 5 10 10 C 1.46903 * 110.99746 * 90.22242 * 9 7 6 11 11 C 1.53004 * 109.46943 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47045 * 300.00147 * 11 10 9 13 13 C 1.53002 * 109.46834 * 60.00394 * 11 10 9 14 14 C 1.52997 * 109.46955 * 180.02562 * 11 10 9 15 15 C 1.50700 * 109.47034 * 180.02562 * 14 11 10 16 16 H 1.08000 * 120.00072 * 359.97438 * 15 14 11 17 17 C 1.37877 * 119.99895 * 179.97438 * 15 14 11 18 18 N 1.31517 * 120.00131 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 120.00102 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47229 * 89.99921 * 19 17 15 21 21 H 1.48503 * 109.46991 * 209.99544 * 19 17 15 22 22 H 1.48501 * 109.46840 * 329.99509 * 19 17 15 23 23 C 1.53874 * 110.03319 * 174.99954 * 3 2 1 24 24 H 1.08999 * 110.03489 * 238.61838 * 23 3 2 25 25 C 1.53008 * 110.03175 * 359.97438 * 23 3 2 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 31 31 H 1.08998 * 110.49312 * 335.78221 * 5 3 2 32 32 H 1.08994 * 110.49143 * 98.42746 * 5 3 2 33 33 H 1.08996 * 110.75658 * 279.62805 * 6 5 3 34 34 H 1.09004 * 110.91433 * 156.33043 * 6 5 3 35 35 H 1.00897 * 110.99813 * 326.27351 * 9 7 6 36 36 H 1.08999 * 109.47474 * 300.00260 * 10 9 7 37 37 H 1.09006 * 109.46770 * 60.00207 * 10 9 7 38 38 H 1.09004 * 109.46823 * 60.00470 * 12 11 10 39 39 H 1.09003 * 109.46675 * 180.02562 * 12 11 10 40 40 H 1.08998 * 109.47305 * 299.99912 * 12 11 10 41 41 H 1.08999 * 109.47041 * 59.99878 * 13 11 10 42 42 H 1.09000 * 109.46567 * 179.97438 * 13 11 10 43 43 H 1.08999 * 109.47049 * 299.99421 * 13 11 10 44 44 H 1.09006 * 109.47075 * 299.99800 * 14 11 10 45 45 H 1.08998 * 109.47484 * 60.00034 * 14 11 10 46 46 H 0.96994 * 119.99983 * 180.02562 * 18 17 15 47 47 H 1.08996 * 109.47107 * 59.99733 * 25 23 3 48 48 H 1.08999 * 109.47036 * 180.02562 * 25 23 3 49 49 H 1.08997 * 109.46879 * 299.99776 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5915 1.9969 0.8244 5 6 1.7006 2.1229 -1.3422 6 6 2.9290 3.0201 -1.6346 7 6 4.1125 2.1495 -1.1441 8 1 4.9718 2.7752 -0.9027 9 7 4.4712 1.1503 -2.1593 10 6 5.4877 1.6767 -3.0800 11 6 5.8352 0.6097 -4.1200 12 6 6.3815 -0.6325 -3.4134 13 6 4.5777 0.2368 -4.9079 14 6 6.8943 1.1577 -5.0785 15 6 7.2362 0.1070 -6.1034 16 1 6.7472 -0.8555 -6.0737 17 6 8.1731 0.3746 -7.0788 18 7 8.4719 -0.5425 -7.9729 19 14 9.0193 2.0392 -7.1297 20 1 10.2542 1.9921 -6.3063 21 1 9.3726 2.3721 -8.5331 22 1 8.1038 3.0765 -6.5902 23 6 3.5735 1.4595 0.1260 24 1 3.8692 2.0220 1.0116 25 6 4.1081 0.0284 0.2125 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.5773 1.3773 -2.1276 32 1 0.7999 2.7291 -1.2457 33 1 2.8721 3.9495 -1.0681 34 1 3.0162 3.2246 -2.7017 35 1 3.6548 0.8372 -2.6627 36 1 5.0987 2.5620 -3.5830 37 1 6.3837 1.9419 -2.5187 38 1 5.6271 -1.0231 -2.7303 39 1 6.6295 -1.3925 -4.1544 40 1 7.2773 -0.3669 -2.8521 41 1 4.1886 1.1219 -5.4112 42 1 4.8254 -0.5230 -5.6491 43 1 3.8235 -0.1538 -4.2247 44 1 6.5055 2.0429 -5.5820 45 1 7.7901 1.4231 -4.5171 46 1 9.1313 -0.3544 -8.6589 47 1 3.8285 -0.5188 -0.6877 48 1 5.1942 0.0511 0.3019 49 1 3.6823 -0.4663 1.0854 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229697009.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:55 Heat of formation + Delta-G solvation = -37.158080 kcal Electronic energy + Delta-G solvation = -21982.763021 eV Core-core repulsion = 19136.114235 eV Total energy + Delta-G solvation = -2846.648786 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.76350 -37.24570 -34.26601 -32.40906 -31.33604 -31.09910 -27.75956 -26.72852 -26.34093 -25.01646 -24.67224 -22.82884 -21.99976 -20.05020 -18.63028 -17.74530 -16.79157 -16.25154 -15.17825 -14.75913 -14.68606 -14.35052 -13.98476 -13.86508 -13.45061 -13.19107 -13.08653 -12.59767 -12.50535 -12.25785 -12.09547 -11.89158 -11.48689 -11.39179 -11.22105 -11.03532 -10.94206 -10.84550 -10.79634 -10.77974 -10.47482 -10.45770 -10.36046 -10.23891 -10.13904 -9.75252 -9.65967 -9.22501 -8.86601 -8.47673 -8.00433 -5.98047 -3.93927 3.33552 3.41080 3.44624 4.36847 4.49899 4.50108 4.57522 4.77264 5.11945 5.13720 5.23722 5.34930 5.35205 5.42776 5.51498 5.56018 5.59093 5.64770 5.73647 5.74846 5.75853 5.82942 5.89917 5.91632 5.98485 6.00612 6.07349 6.11395 6.23393 6.30513 6.30962 6.37062 6.42533 6.47117 6.62277 6.69888 6.75875 6.83298 7.11576 7.18039 7.24325 7.36689 7.42303 7.50628 7.73896 7.88207 8.62227 9.08129 9.65327 11.15132 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.032034 B = 0.004147 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.853814 B = 6750.765053 C = 6933.910790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.087 4.087 4 H 0.064 0.936 5 C -0.116 4.116 6 C -0.157 4.157 7 C 0.086 3.914 8 H 0.075 0.925 9 N -0.669 5.669 10 C 0.067 3.933 11 C -0.048 4.048 12 C -0.117 4.117 13 C -0.129 4.129 14 C -0.004 4.004 15 C -0.506 4.506 16 H 0.078 0.922 17 C 0.064 3.936 18 N -0.906 5.906 19 Si 0.875 3.125 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.267 1.267 23 C -0.083 4.083 24 H 0.064 0.936 25 C -0.125 4.125 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.339 0.661 36 H 0.021 0.979 37 H 0.064 0.936 38 H 0.045 0.955 39 H 0.058 0.942 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.068 0.932 43 H 0.035 0.965 44 H 0.011 0.989 45 H 0.009 0.991 46 H 0.261 0.739 47 H 0.071 0.929 48 H 0.049 0.951 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.908 4.695 16.807 22.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.106 4.106 4 H 0.083 0.917 5 C -0.154 4.154 6 C -0.196 4.196 7 C -0.025 4.025 8 H 0.093 0.907 9 N -0.301 5.301 10 C -0.062 4.062 11 C -0.048 4.048 12 C -0.174 4.174 13 C -0.187 4.187 14 C -0.042 4.042 15 C -0.544 4.544 16 H 0.096 0.904 17 C -0.136 4.136 18 N -0.546 5.546 19 Si 0.703 3.297 20 H -0.205 1.205 21 H -0.216 1.216 22 H -0.192 1.192 23 C -0.102 4.102 24 H 0.082 0.918 25 C -0.182 4.182 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.159 0.841 36 H 0.039 0.961 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.087 0.913 43 H 0.054 0.946 44 H 0.030 0.970 45 H 0.028 0.972 46 H 0.071 0.929 47 H 0.090 0.910 48 H 0.068 0.932 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -13.331 4.335 17.050 22.073 hybrid contribution 0.049 1.700 -0.730 1.851 sum -13.283 6.036 16.320 21.891 Atomic orbital electron populations 1.21832 0.96656 1.01230 1.01435 1.21757 0.94856 0.96423 1.02520 1.21818 0.95504 0.95942 0.97292 0.91746 1.22410 0.97411 0.98378 0.97166 1.23176 0.96569 0.98771 1.01101 1.22368 0.95868 0.91556 0.92743 0.90723 1.60668 1.15171 1.37111 1.17102 1.22156 0.94468 0.96125 0.93418 1.20405 0.96091 0.94677 0.93666 1.21606 0.99107 0.97525 0.99157 1.21769 0.96124 1.01309 0.99477 1.19624 0.93383 0.96709 0.94488 1.21147 1.22239 1.00629 1.10362 0.90444 1.25017 0.96640 0.96416 0.95532 1.69910 1.33890 1.33833 1.16963 0.86850 0.80254 0.85600 0.76963 1.20460 1.21610 1.19218 1.21805 0.93865 0.97708 0.96822 0.91768 1.21671 1.00361 0.95220 1.00995 0.93079 0.92852 0.93262 0.91712 0.91293 0.91552 0.92231 0.91587 0.91703 0.84071 0.96113 0.91777 0.93616 0.92288 0.94308 0.94263 0.91253 0.94650 0.97047 0.97226 0.92927 0.90969 0.93156 0.94282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.77 37.16 0.36 -0.88 16 2 C -0.12 -1.06 4.11 -26.73 -0.11 -1.17 16 3 C -0.09 -0.80 2.93 -89.50 -0.26 -1.06 16 4 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 5 C -0.12 -1.11 5.22 -25.07 -0.13 -1.24 16 6 C -0.16 -1.65 6.40 -24.73 -0.16 -1.81 16 7 C 0.09 0.99 3.10 -66.05 -0.20 0.78 16 8 H 0.07 0.91 7.83 -51.93 -0.41 0.50 16 9 N -0.67 -8.90 3.74 -104.97 -0.39 -9.29 16 10 C 0.07 1.08 4.51 -3.82 -0.02 1.06 16 11 C -0.05 -0.92 0.60 -154.51 -0.09 -1.01 16 12 C -0.12 -2.22 8.06 37.16 0.30 -1.92 16 13 C -0.13 -2.37 7.89 37.16 0.29 -2.08 16 14 C 0.00 -0.10 3.11 -27.88 -0.09 -0.19 16 15 C -0.51 -14.00 8.20 -34.44 -0.28 -14.28 16 16 H 0.08 2.29 5.92 -52.49 -0.31 1.98 16 17 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 18 N -0.91 -27.89 13.96 55.43 0.77 -27.12 16 19 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 23 C -0.08 -0.85 3.47 -89.50 -0.31 -1.16 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 C -0.13 -1.37 7.37 37.16 0.27 -1.10 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.43 7.51 -51.93 -0.39 0.04 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.57 6.42 -51.93 -0.33 0.24 16 30 H 0.07 0.68 6.91 -51.93 -0.36 0.32 16 31 H 0.07 0.67 7.26 -51.93 -0.38 0.29 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.75 7.98 -51.93 -0.41 0.34 16 35 H 0.34 4.49 5.70 -39.29 -0.22 4.27 16 36 H 0.02 0.34 7.98 -51.93 -0.41 -0.08 16 37 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 38 H 0.04 0.77 7.60 -51.93 -0.39 0.38 16 39 H 0.06 1.26 6.62 -51.93 -0.34 0.91 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 1.44 6.62 -51.93 -0.34 1.10 16 43 H 0.03 0.55 6.57 -51.93 -0.34 0.21 16 44 H 0.01 0.27 7.20 -51.93 -0.37 -0.10 16 45 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 46 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 47 H 0.07 0.86 5.97 -51.93 -0.31 0.55 16 48 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.04 0.38 6.62 -51.93 -0.34 0.04 16 LS Contribution 354.07 15.07 5.34 5.34 Total: -1.00 -28.49 354.07 -8.94 -37.43 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -9.46 Total: 0.68 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: -0.52 Total: -24.28 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.38 Total: -36.41 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.49 -8.94 -37.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229697009.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.271 kcal (2) G-P(sol) polarization free energy of solvation -28.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds