Wall clock time and date at job start Mon Mar 30 2020 07:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08995 * 110.01803 * 53.60587 * 3 2 1 5 5 C 1.54261 * 110.02845 * 292.16537 * 3 2 1 6 6 C 1.54897 * 104.19535 * 217.10405 * 5 3 2 7 7 C 1.54896 * 102.74603 * 37.94567 * 6 5 3 8 8 H 1.08999 * 110.48179 * 203.38379 * 7 6 5 9 9 N 1.46897 * 110.48824 * 80.73389 * 7 6 5 10 10 C 1.46903 * 110.99746 * 90.22242 * 9 7 6 11 11 C 1.53004 * 109.46943 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47045 * 300.00147 * 11 10 9 13 13 C 1.53002 * 109.46834 * 60.00394 * 11 10 9 14 14 C 1.52997 * 109.46955 * 180.02562 * 11 10 9 15 15 C 1.50700 * 109.47034 * 180.02562 * 14 11 10 16 16 H 1.08000 * 120.00072 * 359.97438 * 15 14 11 17 17 C 1.37877 * 119.99895 * 179.97438 * 15 14 11 18 18 N 1.31517 * 120.00131 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 120.00102 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47229 * 89.99921 * 19 17 15 21 21 H 1.48503 * 109.46991 * 209.99544 * 19 17 15 22 22 H 1.48501 * 109.46840 * 329.99509 * 19 17 15 23 23 C 1.53874 * 110.03319 * 174.99954 * 3 2 1 24 24 H 1.08999 * 110.03489 * 238.61838 * 23 3 2 25 25 C 1.53008 * 110.03175 * 359.97438 * 23 3 2 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 31 31 H 1.08998 * 110.49312 * 335.78221 * 5 3 2 32 32 H 1.08994 * 110.49143 * 98.42746 * 5 3 2 33 33 H 1.08996 * 110.75658 * 279.62805 * 6 5 3 34 34 H 1.09004 * 110.91433 * 156.33043 * 6 5 3 35 35 H 1.00897 * 110.99813 * 326.27351 * 9 7 6 36 36 H 1.08999 * 109.47474 * 300.00260 * 10 9 7 37 37 H 1.09006 * 109.46770 * 60.00207 * 10 9 7 38 38 H 1.09004 * 109.46823 * 60.00470 * 12 11 10 39 39 H 1.09003 * 109.46675 * 180.02562 * 12 11 10 40 40 H 1.08998 * 109.47305 * 299.99912 * 12 11 10 41 41 H 1.08999 * 109.47041 * 59.99878 * 13 11 10 42 42 H 1.09000 * 109.46567 * 179.97438 * 13 11 10 43 43 H 1.08999 * 109.47049 * 299.99421 * 13 11 10 44 44 H 1.09006 * 109.47075 * 299.99800 * 14 11 10 45 45 H 1.08998 * 109.47484 * 60.00034 * 14 11 10 46 46 H 0.96994 * 119.99983 * 180.02562 * 18 17 15 47 47 H 1.08996 * 109.47107 * 59.99733 * 25 23 3 48 48 H 1.08999 * 109.47036 * 180.02562 * 25 23 3 49 49 H 1.08997 * 109.46879 * 299.99776 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5915 1.9969 0.8244 5 6 1.7006 2.1229 -1.3422 6 6 2.9290 3.0201 -1.6346 7 6 4.1125 2.1495 -1.1441 8 1 4.9718 2.7752 -0.9027 9 7 4.4712 1.1503 -2.1593 10 6 5.4877 1.6767 -3.0800 11 6 5.8352 0.6097 -4.1200 12 6 6.3815 -0.6325 -3.4134 13 6 4.5777 0.2368 -4.9079 14 6 6.8943 1.1577 -5.0785 15 6 7.2362 0.1070 -6.1034 16 1 6.7472 -0.8555 -6.0737 17 6 8.1731 0.3746 -7.0788 18 7 8.4719 -0.5425 -7.9729 19 14 9.0193 2.0392 -7.1297 20 1 10.2542 1.9921 -6.3063 21 1 9.3726 2.3721 -8.5331 22 1 8.1038 3.0765 -6.5902 23 6 3.5735 1.4595 0.1260 24 1 3.8692 2.0220 1.0116 25 6 4.1081 0.0284 0.2125 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.5773 1.3773 -2.1276 32 1 0.7999 2.7291 -1.2457 33 1 2.8721 3.9495 -1.0681 34 1 3.0162 3.2246 -2.7017 35 1 3.6548 0.8372 -2.6627 36 1 5.0987 2.5620 -3.5830 37 1 6.3837 1.9419 -2.5187 38 1 5.6271 -1.0231 -2.7303 39 1 6.6295 -1.3925 -4.1544 40 1 7.2773 -0.3669 -2.8521 41 1 4.1886 1.1219 -5.4112 42 1 4.8254 -0.5230 -5.6491 43 1 3.8235 -0.1538 -4.2247 44 1 6.5055 2.0429 -5.5820 45 1 7.7901 1.4231 -4.5171 46 1 9.1313 -0.3544 -8.6589 47 1 3.8285 -0.5188 -0.6877 48 1 5.1942 0.0511 0.3019 49 1 3.6823 -0.4663 1.0854 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229697009.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:54 Heat of formation + Delta-G solvation = -51.171271 kcal Electronic energy + Delta-G solvation = -21983.370679 eV Core-core repulsion = 19136.114235 eV Total energy + Delta-G solvation = -2847.256443 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.66661 -38.69249 -35.42988 -34.29048 -32.35497 -32.03922 -29.60322 -27.90584 -27.72359 -26.26115 -25.66905 -23.82325 -23.53598 -20.93427 -19.71275 -19.06376 -18.86340 -17.20270 -16.40902 -16.14750 -15.80032 -15.46775 -15.21469 -15.11108 -14.89928 -14.36921 -14.17748 -14.03778 -13.94406 -13.54593 -13.28397 -12.90515 -12.81910 -12.70231 -12.57585 -12.25940 -12.22784 -12.15916 -12.05586 -11.87344 -11.75774 -11.67944 -11.60441 -11.34343 -11.22616 -11.09891 -10.96765 -10.89905 -10.69903 -10.68419 -9.09648 -8.21591 -6.21634 1.35410 1.36668 1.47801 2.39324 3.13442 3.33597 3.69193 3.76709 3.97614 4.14684 4.22418 4.34081 4.37658 4.43593 4.52500 4.56998 4.62910 4.70889 4.75371 4.84696 4.86777 4.87450 4.89066 4.95456 4.99189 5.06211 5.08273 5.09972 5.16437 5.19968 5.25258 5.29902 5.31214 5.38663 5.39160 5.46397 5.53184 5.55619 5.59122 5.64517 5.65029 5.77833 5.83586 5.85375 6.28793 6.43896 6.64394 6.85737 7.40818 8.94691 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.032034 B = 0.004147 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.853814 B = 6750.765053 C = 6933.910790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.082 4.082 4 H 0.074 0.926 5 C -0.113 4.113 6 C -0.153 4.153 7 C 0.083 3.917 8 H 0.070 0.930 9 N -0.666 5.666 10 C 0.081 3.919 11 C -0.047 4.047 12 C -0.107 4.107 13 C -0.122 4.122 14 C -0.003 4.003 15 C -0.503 4.503 16 H 0.044 0.956 17 C 0.001 3.999 18 N -0.955 5.955 19 Si 0.940 3.060 20 H -0.271 1.271 21 H -0.288 1.288 22 H -0.250 1.250 23 C -0.079 4.079 24 H 0.072 0.928 25 C -0.121 4.121 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.341 0.659 36 H 0.022 0.978 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.025 0.975 40 H 0.036 0.964 41 H 0.041 0.959 42 H 0.035 0.965 43 H 0.064 0.936 44 H 0.011 0.989 45 H 0.010 0.990 46 H 0.262 0.738 47 H 0.061 0.939 48 H 0.035 0.965 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.135 6.525 18.841 25.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.100 4.100 4 H 0.092 0.908 5 C -0.150 4.150 6 C -0.192 4.192 7 C -0.028 4.028 8 H 0.088 0.912 9 N -0.297 5.297 10 C -0.048 4.048 11 C -0.048 4.048 12 C -0.164 4.164 13 C -0.179 4.179 14 C -0.040 4.040 15 C -0.541 4.541 16 H 0.062 0.938 17 C -0.195 4.195 18 N -0.597 5.597 19 Si 0.765 3.235 20 H -0.196 1.196 21 H -0.214 1.214 22 H -0.174 1.174 23 C -0.098 4.098 24 H 0.090 0.910 25 C -0.178 4.178 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.161 0.839 36 H 0.040 0.960 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.044 0.956 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.054 0.946 43 H 0.083 0.917 44 H 0.029 0.971 45 H 0.028 0.972 46 H 0.071 0.929 47 H 0.080 0.920 48 H 0.054 0.946 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.576 6.172 19.107 24.812 hybrid contribution 0.382 1.044 -1.330 1.734 sum -14.194 7.215 17.777 23.865 Atomic orbital electron populations 1.21812 0.95952 1.01501 1.01709 1.21718 0.95461 0.96114 1.02058 1.21781 0.94613 0.96185 0.97423 0.90802 1.22390 0.97403 0.98167 0.97088 1.23125 0.96365 0.99180 1.00513 1.22430 0.96260 0.91428 0.92659 0.91195 1.60620 1.14823 1.37723 1.16582 1.21864 0.95328 0.94751 0.92870 1.20337 0.95110 0.95474 0.93830 1.21495 0.99713 0.96696 0.98495 1.21670 0.96574 1.00485 0.99204 1.19592 0.94790 0.95372 0.94288 1.21435 1.21183 1.00409 1.11042 0.93756 1.25915 0.97786 1.00411 0.95349 1.70064 1.35182 1.36265 1.18154 0.85803 0.79451 0.81104 0.77125 1.19650 1.21419 1.17414 1.21789 0.94585 0.97127 0.96343 0.90950 1.21617 0.99443 0.95730 1.01034 0.92887 0.92956 0.92581 0.91557 0.92378 0.92171 0.91220 0.90551 0.92757 0.83863 0.95985 0.91978 0.91367 0.95560 0.94519 0.93938 0.94601 0.91676 0.97088 0.97199 0.92912 0.91980 0.94587 0.93138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.77 71.98 0.70 -1.40 16 2 C -0.12 -1.80 4.11 30.60 0.13 -1.67 16 3 C -0.08 -1.27 2.93 -10.07 -0.03 -1.30 16 4 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 5 C -0.11 -1.85 5.22 31.67 0.17 -1.68 16 6 C -0.15 -2.81 6.40 31.89 0.20 -2.60 16 7 C 0.08 1.71 3.10 45.99 0.14 1.85 16 8 H 0.07 1.54 7.83 -2.39 -0.02 1.52 16 9 N -0.67 -16.35 3.74 -486.01 -1.82 -18.17 16 10 C 0.08 2.47 4.51 86.30 0.39 2.86 16 11 C -0.05 -1.77 0.60 -52.18 -0.03 -1.80 16 12 C -0.11 -4.05 8.06 71.98 0.58 -3.47 16 13 C -0.12 -4.41 7.89 71.98 0.57 -3.84 16 14 C 0.00 -0.12 3.11 29.85 0.09 -0.03 16 15 C -0.50 -28.50 8.20 25.60 0.21 -28.29 16 16 H 0.04 2.75 5.92 -2.91 -0.02 2.74 16 17 C 0.00 0.06 5.47 84.65 0.46 0.52 16 18 N -0.95 -60.49 13.96 21.45 0.30 -60.19 16 19 Si 0.94 45.18 27.47 68.60 1.88 47.07 16 20 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 22 H -0.25 -11.24 6.54 99.48 0.65 -10.59 16 23 C -0.08 -1.42 3.47 -10.07 -0.03 -1.46 16 24 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 25 C -0.12 -2.40 7.37 71.98 0.53 -1.87 16 26 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.05 0.73 7.51 -2.39 -0.02 0.71 16 28 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.07 1.01 6.42 -2.39 -0.02 0.99 16 30 H 0.06 1.03 6.91 -2.39 -0.02 1.02 16 31 H 0.06 1.07 7.26 -2.39 -0.02 1.05 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.05 1.13 7.98 -2.39 -0.02 1.11 16 35 H 0.34 8.25 5.70 -89.70 -0.51 7.74 16 36 H 0.02 0.67 7.98 -2.39 -0.02 0.65 16 37 H 0.06 1.93 8.08 -2.38 -0.02 1.91 16 38 H 0.07 2.25 7.60 -2.38 -0.02 2.23 16 39 H 0.03 1.14 6.62 -2.39 -0.02 1.12 16 40 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.03 1.52 6.62 -2.39 -0.02 1.50 16 43 H 0.06 1.93 6.57 -2.39 -0.02 1.92 16 44 H 0.01 0.51 7.20 -2.38 -0.02 0.49 16 45 H 0.01 0.45 7.57 -2.39 -0.02 0.44 16 46 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 47 H 0.06 1.36 5.97 -2.39 -0.01 1.34 16 48 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.05 0.88 6.62 -2.39 -0.02 0.86 16 Total: -1.00 -62.06 354.07 4.76 -57.30 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.32 Total: 18.16 kcal Atomic # 6 Polarization: -48.25 SS G_CDS: 4.08 Total: -44.17 kcal Atomic # 7 Polarization: -76.84 SS G_CDS: -1.52 Total: -78.35 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.88 Total: 47.07 kcal Total: -62.06 4.76 -57.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229697009.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.126 kcal (2) G-P(sol) polarization free energy of solvation -62.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds