Wall clock time and date at job start Mon Mar 30 2020 06:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47075 * 2 1 4 4 C 1.52997 * 109.47308 * 120.00104 * 2 1 3 5 5 C 1.53000 * 109.47306 * 174.99669 * 4 2 1 6 6 C 1.53006 * 109.47029 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.47029 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47306 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47096 * 180.02562 * 8 7 6 10 10 N 1.46906 * 109.46923 * 179.97438 * 9 8 7 11 11 C 1.46894 * 110.99880 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47155 * 185.38213 * 11 10 9 13 13 C 1.50708 * 115.54730 * 294.80053 * 12 11 10 14 14 H 1.07994 * 120.00501 * 95.20134 * 13 12 11 15 15 C 1.37881 * 119.99823 * 274.92856 * 13 12 11 16 16 N 1.31521 * 119.99926 * 355.42157 * 15 13 12 17 17 Si 1.86801 * 120.00038 * 175.41588 * 15 13 12 18 18 H 1.48495 * 109.46929 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46745 * 120.00135 * 17 15 13 20 20 H 1.48498 * 109.47103 * 239.99813 * 17 15 13 21 21 C 1.52996 * 117.50305 * 80.46470 * 12 11 10 22 22 C 1.52994 * 117.50444 * 149.12972 * 12 11 10 23 23 H 1.08994 * 109.46850 * 299.99869 * 1 2 3 24 24 H 1.08999 * 109.46965 * 59.99924 * 1 2 3 25 25 H 1.08995 * 109.47040 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47174 * 240.00183 * 2 1 3 27 27 H 1.08994 * 109.47175 * 60.00330 * 3 2 1 28 28 H 1.09000 * 109.46876 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47286 * 299.99880 * 3 2 1 30 30 H 1.09007 * 109.46940 * 54.99700 * 4 2 1 31 31 H 1.08997 * 109.47233 * 295.00051 * 4 2 1 32 32 H 1.08996 * 109.46777 * 60.00432 * 5 4 2 33 33 H 1.08997 * 109.47286 * 300.00349 * 5 4 2 34 34 H 1.09005 * 109.46831 * 60.00819 * 6 5 4 35 35 H 1.08997 * 109.47628 * 300.00454 * 6 5 4 36 36 H 1.09005 * 109.46862 * 59.99951 * 7 6 5 37 37 H 1.08997 * 109.47286 * 300.00663 * 7 6 5 38 38 H 1.08998 * 109.46841 * 59.99929 * 8 7 6 39 39 H 1.09001 * 109.46884 * 300.00024 * 8 7 6 40 40 H 1.08996 * 109.47149 * 60.00332 * 9 8 7 41 41 H 1.09001 * 109.47006 * 299.99622 * 9 8 7 42 42 H 1.00901 * 110.99671 * 303.95463 * 10 9 8 43 43 H 1.08995 * 109.47366 * 65.38019 * 11 10 9 44 44 H 1.09006 * 109.46837 * 305.37455 * 11 10 9 45 45 H 0.96995 * 119.99832 * 185.00406 * 16 15 13 46 46 H 1.08999 * 117.50032 * 215.00249 * 21 12 11 47 47 H 1.09002 * 117.49839 * 0.02981 * 21 12 11 48 48 H 1.09004 * 117.49798 * 359.97366 * 22 12 11 49 49 H 1.09005 * 117.50278 * 144.97026 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.8311 1.1879 6 6 4.0749 -1.5518 2.4375 7 6 5.5998 -1.6611 2.3764 8 6 6.1098 -2.3824 3.6256 9 6 7.6348 -2.4911 3.5649 10 7 8.1245 -3.1831 4.7646 11 6 9.5882 -3.3055 4.7411 12 6 10.0489 -4.1454 5.9341 13 6 9.7992 -3.5390 7.2910 14 1 8.9107 -3.8029 7.8452 15 6 10.7080 -2.6515 7.8274 16 7 11.8351 -2.4030 7.1968 17 14 10.3383 -1.8022 9.4495 18 1 9.0151 -2.2506 9.9527 19 1 11.3881 -2.1498 10.4407 20 1 10.3182 -0.3315 9.2449 21 6 9.9434 -5.6666 5.8100 22 6 11.3142 -4.9874 5.7587 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6054 -1.7198 1.2951 31 1 1.7517 -0.1584 2.1369 32 1 3.9995 0.1674 1.1420 33 1 3.8532 -1.3940 0.3001 34 1 3.6404 -2.5504 2.4837 35 1 3.7866 -0.9886 3.3250 36 1 6.0341 -0.6624 2.3303 37 1 5.8885 -2.2241 1.4889 38 1 5.6755 -3.3811 3.6713 39 1 5.8211 -1.8196 4.5134 40 1 8.0687 -1.4923 3.5195 41 1 7.9238 -3.0536 2.6771 42 1 7.8144 -2.7158 5.6034 43 1 10.0367 -2.3139 4.8000 44 1 9.8974 -3.7898 3.8148 45 1 12.5059 -1.8356 7.6079 46 1 9.6934 -6.2289 6.7097 47 1 9.5461 -6.0692 4.8782 48 1 11.8182 -4.9434 4.7932 49 1 11.9663 -5.1025 6.6246 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232605464.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:01 Heat of formation + Delta-G solvation = -30.725767 kcal Electronic energy + Delta-G solvation = -19857.591971 eV Core-core repulsion = 17011.222111 eV Total energy + Delta-G solvation = -2846.369860 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -37.72957 -37.02273 -35.74865 -33.86230 -31.86795 -31.01028 -27.64277 -27.44534 -25.59723 -24.48438 -22.61945 -21.06133 -20.98986 -20.75204 -20.10119 -18.93405 -16.15121 -15.88232 -15.47320 -14.84990 -14.62620 -14.52454 -14.25882 -13.98500 -13.64062 -13.59656 -12.83402 -12.70052 -12.59642 -12.43900 -12.18791 -11.79755 -11.72494 -11.47305 -11.32859 -11.13386 -10.98531 -10.94492 -10.90726 -10.83469 -10.76157 -10.56442 -10.42137 -10.33622 -10.22319 -10.02365 -9.25901 -8.79449 -8.35679 -8.00081 -7.44250 -5.98352 -4.05489 3.28241 3.37111 3.41252 4.38512 4.42249 4.57762 4.64213 4.80902 4.89658 5.09217 5.16545 5.20950 5.29380 5.30506 5.39698 5.44693 5.46817 5.53422 5.55954 5.64925 5.69249 5.70294 5.83265 5.83696 5.88402 5.95087 6.01961 6.04229 6.11532 6.13524 6.20284 6.25197 6.28312 6.50398 6.53938 6.56034 6.63742 6.89415 6.91482 6.98139 7.25503 7.56267 7.66325 7.92019 8.06086 8.33749 8.54696 8.98581 9.59990 11.08891 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.025795 B = 0.002550 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.239182 B =10975.706181 C =11575.937089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 C -0.150 4.150 4 C -0.116 4.116 5 C -0.121 4.121 6 C -0.119 4.119 7 C -0.117 4.117 8 C -0.116 4.116 9 C 0.058 3.942 10 N -0.683 5.683 11 C 0.106 3.894 12 C 0.045 3.955 13 C -0.490 4.490 14 H 0.060 0.940 15 C 0.067 3.933 16 N -0.881 5.881 17 Si 0.887 3.113 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.201 4.201 22 C -0.156 4.156 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.018 0.982 41 H 0.060 0.940 42 H 0.346 0.654 43 H 0.029 0.971 44 H 0.037 0.963 45 H 0.258 0.742 46 H 0.072 0.928 47 H 0.063 0.937 48 H 0.058 0.942 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.388 4.951 -13.342 22.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.207 4.207 4 C -0.153 4.153 5 C -0.159 4.159 6 C -0.156 4.156 7 C -0.155 4.155 8 C -0.154 4.154 9 C -0.072 4.072 10 N -0.314 5.314 11 C -0.023 4.023 12 C 0.045 3.955 13 C -0.528 4.528 14 H 0.078 0.922 15 C -0.135 4.135 16 N -0.518 5.518 17 Si 0.715 3.285 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.238 4.238 22 C -0.195 4.195 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.036 0.964 41 H 0.078 0.922 42 H 0.164 0.836 43 H 0.047 0.953 44 H 0.056 0.944 45 H 0.068 0.932 46 H 0.090 0.910 47 H 0.082 0.918 48 H 0.076 0.924 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.343 4.490 -13.616 22.502 hybrid contribution 0.328 1.425 1.071 1.812 sum -17.015 5.915 -12.545 21.952 Atomic orbital electron populations 1.21849 0.95480 1.01610 1.01594 1.21140 0.95489 0.96468 0.98642 1.21897 1.01355 0.95951 1.01483 1.21670 0.95802 1.00315 0.97526 1.21668 0.95108 1.00780 0.98321 1.21600 0.95724 1.00556 0.97765 1.21557 0.95015 1.00537 0.98437 1.21561 0.95636 1.00846 0.97341 1.21919 0.94226 0.96051 0.95002 1.60447 1.12344 1.54745 1.03843 1.21433 0.85618 0.98624 0.96626 1.18767 0.96165 0.86830 0.93786 1.20518 1.07075 1.24309 1.00854 0.92160 1.25029 0.95230 0.96275 0.97015 1.70025 1.06678 1.37699 1.37390 0.86620 0.78493 0.79454 0.83965 1.19645 1.21120 1.21120 1.22863 1.02158 0.99093 0.99707 1.22498 0.90708 1.06547 0.99708 0.92764 0.92909 0.92779 0.91380 0.92773 0.92318 0.93049 0.92082 0.92052 0.91895 0.92198 0.92081 0.92143 0.92347 0.92204 0.91374 0.92312 0.96394 0.92160 0.83591 0.95276 0.94405 0.93230 0.90962 0.91806 0.92393 0.90016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.19 37.16 0.34 -0.61 16 2 C -0.10 -0.70 2.92 -90.62 -0.26 -0.97 16 3 C -0.15 -1.04 8.95 37.16 0.33 -0.70 16 4 C -0.12 -0.89 4.68 -26.73 -0.13 -1.02 16 5 C -0.12 -1.03 4.97 -26.73 -0.13 -1.16 16 6 C -0.12 -1.15 5.21 -26.73 -0.14 -1.29 16 7 C -0.12 -1.31 5.21 -26.73 -0.14 -1.45 16 8 C -0.12 -1.57 5.47 -26.73 -0.15 -1.72 16 9 C 0.06 0.95 5.68 -3.82 -0.02 0.93 16 10 N -0.68 -13.74 6.47 -113.78 -0.74 -14.47 16 11 C 0.11 2.43 5.54 -3.83 -0.02 2.41 16 12 C 0.05 1.13 1.65 -155.66 -0.26 0.88 16 13 C -0.49 -13.31 8.33 -34.43 -0.29 -13.59 16 14 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 15 C 0.07 1.84 5.43 -17.82 -0.10 1.74 16 16 N -0.88 -25.10 12.65 55.43 0.70 -24.39 16 17 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 21 C -0.20 -4.63 9.96 -26.70 -0.27 -4.90 16 22 C -0.16 -3.83 9.14 -26.70 -0.24 -4.08 16 23 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 24 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.42 6.57 -51.93 -0.34 0.08 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.54 6.57 -51.93 -0.34 0.20 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.35 7.22 8.30 -39.29 -0.33 6.90 16 43 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.04 0.83 8.08 -51.93 -0.42 0.41 16 45 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 46 H 0.07 1.66 8.14 -51.93 -0.42 1.23 16 47 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 48 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 49 H 0.08 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 387.10 15.07 5.83 5.83 Total: -1.00 -27.64 387.10 -10.96 -38.60 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -10.27 Total: 3.89 kcal Atomic # 6 Polarization: -24.06 SS G_CDS: -1.47 Total: -25.53 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: -0.04 Total: -38.87 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -27.64 -10.96 -38.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232605464.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.875 kcal (2) G-P(sol) polarization free energy of solvation -27.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds