Wall clock time and date at job start Mon Mar 30 2020 06:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47075 * 2 1 4 4 C 1.52997 * 109.47308 * 120.00104 * 2 1 3 5 5 C 1.53000 * 109.47306 * 174.99669 * 4 2 1 6 6 C 1.53006 * 109.47029 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.47029 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47306 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47096 * 180.02562 * 8 7 6 10 10 N 1.46906 * 109.46923 * 179.97438 * 9 8 7 11 11 C 1.46894 * 110.99880 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47155 * 185.38213 * 11 10 9 13 13 C 1.50708 * 115.54730 * 294.80053 * 12 11 10 14 14 H 1.07994 * 120.00501 * 95.20134 * 13 12 11 15 15 C 1.37881 * 119.99823 * 274.92856 * 13 12 11 16 16 N 1.31521 * 119.99926 * 355.42157 * 15 13 12 17 17 Si 1.86801 * 120.00038 * 175.41588 * 15 13 12 18 18 H 1.48495 * 109.46929 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46745 * 120.00135 * 17 15 13 20 20 H 1.48498 * 109.47103 * 239.99813 * 17 15 13 21 21 C 1.52996 * 117.50305 * 80.46470 * 12 11 10 22 22 C 1.52994 * 117.50444 * 149.12972 * 12 11 10 23 23 H 1.08994 * 109.46850 * 299.99869 * 1 2 3 24 24 H 1.08999 * 109.46965 * 59.99924 * 1 2 3 25 25 H 1.08995 * 109.47040 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47174 * 240.00183 * 2 1 3 27 27 H 1.08994 * 109.47175 * 60.00330 * 3 2 1 28 28 H 1.09000 * 109.46876 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47286 * 299.99880 * 3 2 1 30 30 H 1.09007 * 109.46940 * 54.99700 * 4 2 1 31 31 H 1.08997 * 109.47233 * 295.00051 * 4 2 1 32 32 H 1.08996 * 109.46777 * 60.00432 * 5 4 2 33 33 H 1.08997 * 109.47286 * 300.00349 * 5 4 2 34 34 H 1.09005 * 109.46831 * 60.00819 * 6 5 4 35 35 H 1.08997 * 109.47628 * 300.00454 * 6 5 4 36 36 H 1.09005 * 109.46862 * 59.99951 * 7 6 5 37 37 H 1.08997 * 109.47286 * 300.00663 * 7 6 5 38 38 H 1.08998 * 109.46841 * 59.99929 * 8 7 6 39 39 H 1.09001 * 109.46884 * 300.00024 * 8 7 6 40 40 H 1.08996 * 109.47149 * 60.00332 * 9 8 7 41 41 H 1.09001 * 109.47006 * 299.99622 * 9 8 7 42 42 H 1.00901 * 110.99671 * 303.95463 * 10 9 8 43 43 H 1.08995 * 109.47366 * 65.38019 * 11 10 9 44 44 H 1.09006 * 109.46837 * 305.37455 * 11 10 9 45 45 H 0.96995 * 119.99832 * 185.00406 * 16 15 13 46 46 H 1.08999 * 117.50032 * 215.00249 * 21 12 11 47 47 H 1.09002 * 117.49839 * 0.02981 * 21 12 11 48 48 H 1.09004 * 117.49798 * 359.97366 * 22 12 11 49 49 H 1.09005 * 117.50278 * 144.97026 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.8311 1.1879 6 6 4.0749 -1.5518 2.4375 7 6 5.5998 -1.6611 2.3764 8 6 6.1098 -2.3824 3.6256 9 6 7.6348 -2.4911 3.5649 10 7 8.1245 -3.1831 4.7646 11 6 9.5882 -3.3055 4.7411 12 6 10.0489 -4.1454 5.9341 13 6 9.7992 -3.5390 7.2910 14 1 8.9107 -3.8029 7.8452 15 6 10.7080 -2.6515 7.8274 16 7 11.8351 -2.4030 7.1968 17 14 10.3383 -1.8022 9.4495 18 1 9.0151 -2.2506 9.9527 19 1 11.3881 -2.1498 10.4407 20 1 10.3182 -0.3315 9.2449 21 6 9.9434 -5.6666 5.8100 22 6 11.3142 -4.9874 5.7587 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6054 -1.7198 1.2951 31 1 1.7517 -0.1584 2.1369 32 1 3.9995 0.1674 1.1420 33 1 3.8532 -1.3940 0.3001 34 1 3.6404 -2.5504 2.4837 35 1 3.7866 -0.9886 3.3250 36 1 6.0341 -0.6624 2.3303 37 1 5.8885 -2.2241 1.4889 38 1 5.6755 -3.3811 3.6713 39 1 5.8211 -1.8196 4.5134 40 1 8.0687 -1.4923 3.5195 41 1 7.9238 -3.0536 2.6771 42 1 7.8144 -2.7158 5.6034 43 1 10.0367 -2.3139 4.8000 44 1 9.8974 -3.7898 3.8148 45 1 12.5059 -1.8356 7.6079 46 1 9.6934 -6.2289 6.7097 47 1 9.5461 -6.0692 4.8782 48 1 11.8182 -4.9434 4.7932 49 1 11.9663 -5.1025 6.6246 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232605464.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:00 Heat of formation + Delta-G solvation = -42.866392 kcal Electronic energy + Delta-G solvation = -19858.118428 eV Core-core repulsion = 17011.222111 eV Total energy + Delta-G solvation = -2846.896317 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.90415 -38.30503 -36.96818 -35.04661 -33.94500 -32.04485 -28.74110 -28.00158 -27.53230 -25.87880 -23.81450 -22.79150 -22.11628 -21.78160 -20.90247 -20.66978 -17.91123 -17.08603 -16.62747 -16.50394 -15.85974 -15.68425 -15.50148 -15.12293 -14.92175 -14.62742 -14.28838 -13.86122 -13.50427 -13.46714 -13.13186 -13.09668 -12.93228 -12.86385 -12.84295 -12.43935 -12.34244 -12.27904 -12.12953 -11.95620 -11.87778 -11.74083 -11.43688 -11.40134 -11.27511 -11.20190 -10.95675 -10.81279 -10.37262 -9.91803 -9.12238 -8.07621 -6.20193 1.39286 1.42668 1.53419 2.42970 3.19279 3.28312 3.68804 3.87076 3.98275 4.05953 4.08011 4.21594 4.28976 4.35103 4.38559 4.55182 4.61719 4.64169 4.69033 4.73643 4.79570 4.82063 4.85474 4.90634 4.93831 4.98550 5.01208 5.02918 5.07815 5.09268 5.11690 5.16705 5.21413 5.28121 5.31030 5.34792 5.40325 5.47070 5.50727 5.60351 5.60644 5.65418 5.71317 5.81798 6.36953 6.48561 6.65655 6.89702 7.47956 8.99314 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.025795 B = 0.002550 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.239182 B =10975.706181 C =11575.937089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 C -0.150 4.150 4 C -0.113 4.113 5 C -0.117 4.117 6 C -0.115 4.115 7 C -0.111 4.111 8 C -0.107 4.107 9 C 0.058 3.942 10 N -0.682 5.682 11 C 0.119 3.881 12 C 0.020 3.980 13 C -0.500 4.500 14 H 0.053 0.947 15 C 0.021 3.979 16 N -0.910 5.910 17 Si 0.949 3.051 18 H -0.266 1.266 19 H -0.284 1.284 20 H -0.283 1.283 21 C -0.178 4.178 22 C -0.162 4.162 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.013 0.987 41 H 0.066 0.934 42 H 0.339 0.661 43 H -0.002 1.002 44 H 0.047 0.953 45 H 0.258 0.742 46 H 0.071 0.929 47 H 0.085 0.915 48 H 0.069 0.931 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.871 5.051 -13.925 23.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 C -0.207 4.207 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.152 4.152 7 C -0.149 4.149 8 C -0.145 4.145 9 C -0.071 4.071 10 N -0.313 5.313 11 C -0.010 4.010 12 C 0.019 3.981 13 C -0.538 4.538 14 H 0.071 0.929 15 C -0.179 4.179 16 N -0.548 5.548 17 Si 0.775 3.225 18 H -0.190 1.190 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.216 4.216 22 C -0.200 4.200 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.032 0.968 41 H 0.085 0.915 42 H 0.157 0.843 43 H 0.017 0.983 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.090 0.910 47 H 0.103 0.897 48 H 0.087 0.913 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.843 4.583 -14.207 24.040 hybrid contribution 0.785 1.363 1.225 1.994 sum -18.059 5.946 -12.982 23.022 Atomic orbital electron populations 1.21842 0.94965 1.01821 1.01843 1.21141 0.95945 0.96420 0.98247 1.21896 1.01154 0.95937 1.01697 1.21641 0.95237 1.00412 0.97780 1.21621 0.95589 1.00571 0.97686 1.21554 0.94565 1.00796 0.98334 1.21502 0.95982 1.00187 0.97254 1.21486 0.93355 1.01111 0.98541 1.22028 0.96095 0.95453 0.93555 1.60456 1.10415 1.55491 1.04901 1.21182 0.87173 0.96589 0.96077 1.18952 0.96946 0.88294 0.93884 1.20727 1.06719 1.24491 1.01838 0.92885 1.25714 0.95076 0.96890 1.00227 1.70132 1.07443 1.38433 1.38822 0.85640 0.78402 0.78266 0.80155 1.18978 1.20982 1.20889 1.22838 1.00467 0.97623 1.00632 1.22404 0.90898 1.07443 0.99269 0.92820 0.92381 0.92603 0.91383 0.92917 0.92622 0.92506 0.92032 0.92314 0.91934 0.92000 0.91965 0.92371 0.92359 0.91678 0.91499 0.92620 0.96833 0.91525 0.84298 0.98343 0.93423 0.93305 0.91029 0.89691 0.91274 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.19 71.98 0.66 -1.02 16 2 C -0.10 -1.26 2.92 -10.79 -0.03 -1.29 16 3 C -0.15 -1.88 8.95 71.98 0.64 -1.23 16 4 C -0.11 -1.58 4.68 30.59 0.14 -1.44 16 5 C -0.12 -1.79 4.97 30.60 0.15 -1.64 16 6 C -0.11 -2.03 5.21 30.60 0.16 -1.88 16 7 C -0.11 -2.28 5.21 30.59 0.16 -2.13 16 8 C -0.11 -2.75 5.47 30.59 0.17 -2.58 16 9 C 0.06 1.84 5.68 86.30 0.49 2.33 16 10 N -0.68 -26.98 6.47 -513.89 -3.33 -30.30 16 11 C 0.12 5.45 5.54 86.30 0.48 5.93 16 12 C 0.02 0.99 1.65 -52.93 -0.09 0.91 16 13 C -0.50 -27.22 8.33 25.60 0.21 -27.01 16 14 H 0.05 2.90 7.82 -2.91 -0.02 2.88 16 15 C 0.02 1.13 5.43 84.65 0.46 1.59 16 16 N -0.91 -52.43 12.65 21.45 0.27 -52.16 16 17 Si 0.95 43.45 29.54 68.60 2.03 45.48 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 21 C -0.18 -8.00 9.96 30.62 0.30 -7.70 16 22 C -0.16 -7.91 9.14 30.62 0.28 -7.63 16 23 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.72 6.57 -2.39 -0.02 0.71 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.85 8.14 -2.38 -0.02 0.84 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.97 6.57 -2.39 -0.02 0.95 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.34 14.10 8.30 -89.69 -0.74 13.36 16 43 H 0.00 -0.09 8.14 -2.39 -0.02 -0.10 16 44 H 0.05 2.05 8.08 -2.38 -0.02 2.03 16 45 H 0.26 14.21 8.32 -92.71 -0.77 13.44 16 46 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 47 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 48 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 49 H 0.06 3.07 8.14 -2.38 -0.02 3.06 16 Total: -1.00 -57.62 387.10 3.27 -54.35 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: 0.10 Total: 27.42 kcal Atomic # 6 Polarization: -48.98 SS G_CDS: 4.19 Total: -44.78 kcal Atomic # 7 Polarization: -79.41 SS G_CDS: -3.05 Total: -82.46 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -57.62 3.27 -54.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232605464.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.480 kcal (2) G-P(sol) polarization free energy of solvation -57.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds