Wall clock time and date at job start Mon Mar 30 2020 07:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.62716 * 2 1 4 4 C 1.54236 * 109.62757 * 239.61290 * 2 1 3 5 5 C 1.45841 * 112.23833 * 160.40182 * 4 2 1 6 6 C 1.54233 * 112.56645 * 61.70779 * 5 4 2 7 7 C 1.50472 * 108.51975 * 280.04714 * 6 5 4 8 8 H 1.09004 * 108.87010 * 333.36827 * 7 6 5 9 9 N 1.46903 * 108.87924 * 214.92980 * 7 6 5 10 10 C 1.46904 * 110.99953 * 82.01475 * 9 7 6 11 11 C 1.52994 * 109.46719 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47525 * 300.00121 * 11 10 9 13 13 C 1.53001 * 109.47568 * 60.00256 * 11 10 9 14 14 C 1.53006 * 109.46905 * 180.02562 * 11 10 9 15 15 C 1.50703 * 109.47127 * 180.02562 * 14 11 10 16 16 H 1.08006 * 119.99876 * 359.97438 * 15 14 11 17 17 C 1.37874 * 120.00208 * 180.02562 * 15 14 11 18 18 N 1.31520 * 119.99567 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00220 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46965 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47159 * 119.99436 * 19 17 15 22 22 H 1.48493 * 109.47210 * 239.99435 * 19 17 15 23 23 C 1.54062 * 112.50365 * 94.14671 * 7 6 5 24 24 C 1.50474 * 109.62725 * 120.38698 * 2 1 3 25 25 H 1.08998 * 109.47370 * 300.00454 * 1 2 3 26 26 H 1.09002 * 109.47184 * 59.99966 * 1 2 3 27 27 H 1.08996 * 109.47467 * 179.97438 * 1 2 3 28 28 H 1.09003 * 108.90090 * 280.86545 * 4 2 1 29 29 H 1.08998 * 108.90040 * 39.35843 * 4 2 1 30 30 H 1.08999 * 108.78672 * 300.92486 * 5 4 2 31 31 H 1.09001 * 108.76394 * 182.47207 * 5 4 2 32 32 H 1.09001 * 109.63424 * 160.33103 * 6 5 4 33 33 H 1.09004 * 109.79305 * 39.84614 * 6 5 4 34 34 H 1.00907 * 110.99535 * 318.06742 * 9 7 6 35 35 H 1.08997 * 109.47096 * 300.00415 * 10 9 7 36 36 H 1.08998 * 109.46590 * 60.00493 * 10 9 7 37 37 H 1.08998 * 109.46921 * 60.00112 * 12 11 10 38 38 H 1.08997 * 109.47522 * 180.02562 * 12 11 10 39 39 H 1.09005 * 109.47383 * 300.00255 * 12 11 10 40 40 H 1.09006 * 109.46737 * 59.99405 * 13 11 10 41 41 H 1.08997 * 109.47502 * 179.97438 * 13 11 10 42 42 H 1.08998 * 109.46982 * 299.99951 * 13 11 10 43 43 H 1.08999 * 109.46924 * 299.99615 * 14 11 10 44 44 H 1.08991 * 109.47028 * 60.00296 * 14 11 10 45 45 H 0.97007 * 119.99266 * 180.02562 * 18 17 15 46 46 H 1.08994 * 108.81241 * 197.42471 * 23 7 6 47 47 H 1.09004 * 108.81178 * 79.14400 * 23 7 6 48 48 H 1.09008 * 108.87759 * 334.83068 * 24 2 1 49 49 H 1.09004 * 108.87733 * 93.27409 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0481 -0.7349 -1.2532 5 6 3.4313 -0.3912 -1.5622 6 6 4.4057 -0.7868 -0.4340 7 6 4.3378 0.2597 0.6451 8 1 4.0313 1.2061 0.1995 9 7 5.6742 0.4244 1.2323 10 6 6.5051 1.3131 0.4089 11 6 7.8862 1.4594 1.0507 12 6 7.7369 2.0545 2.4523 13 6 8.5514 0.0851 1.1484 14 6 8.7514 2.3855 0.1935 15 6 10.1120 2.5291 0.8253 16 1 10.3370 2.0119 1.7464 17 6 11.0692 3.3216 0.2281 18 7 10.7950 3.9517 -0.8932 19 14 12.7555 3.5002 1.0116 20 1 12.8098 2.6951 2.2582 21 1 13.7943 3.0181 0.0661 22 1 13.0033 4.9286 1.3330 23 6 3.3442 -0.1098 1.7631 24 6 2.0354 -0.7169 1.2226 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.9836 -1.8098 -1.0841 29 1 1.4157 -0.4744 -2.1019 30 1 3.4978 0.6846 -1.7249 31 1 3.7241 -0.9050 -2.4778 32 1 5.4204 -0.8407 -0.8285 33 1 4.1208 -1.7554 -0.0231 34 1 6.1232 -0.4694 1.3657 35 1 6.6118 0.8890 -0.5895 36 1 6.0309 2.2921 0.3390 37 1 7.1204 1.3951 3.0632 38 1 8.7208 2.1591 2.9094 39 1 7.2630 3.0337 2.3828 40 1 8.6578 -0.3389 0.1498 41 1 9.5355 0.1893 1.6053 42 1 7.9349 -0.5744 1.7593 43 1 8.8578 1.9619 -0.8052 44 1 8.2774 3.3645 0.1243 45 1 11.4687 4.5090 -1.3136 46 1 3.1062 0.7884 2.3327 47 1 3.8173 -0.8310 2.4296 48 1 1.2746 -0.6652 2.0016 49 1 2.2094 -1.7632 0.9712 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235266642.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:48 Heat of formation + Delta-G solvation = -45.192535 kcal Electronic energy + Delta-G solvation = -21587.730435 eV Core-core repulsion = 18740.733249 eV Total energy + Delta-G solvation = -2846.997186 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.59221 -37.35064 -34.78601 -32.74204 -32.33744 -30.54920 -27.37799 -26.73206 -26.27962 -25.37547 -23.96992 -22.93136 -21.98624 -20.64158 -19.17337 -17.75094 -16.20215 -15.67624 -15.40065 -14.92306 -14.59848 -14.49912 -14.26703 -13.72199 -13.39846 -13.09386 -12.96240 -12.76817 -12.55159 -12.43921 -12.06135 -11.97372 -11.80887 -11.44190 -11.14922 -10.92725 -10.83132 -10.78091 -10.70186 -10.67473 -10.47405 -10.45160 -10.37722 -10.20798 -10.17622 -10.02479 -9.63690 -8.96650 -8.77651 -8.29534 -7.94563 -5.93940 -3.93759 3.33855 3.41654 3.45318 4.35695 4.46657 4.51656 4.65486 4.82145 5.01884 5.08303 5.10395 5.30200 5.33434 5.41965 5.43938 5.55168 5.58085 5.59336 5.75733 5.78389 5.83887 5.88919 5.89847 6.00906 6.03234 6.07796 6.10502 6.15687 6.22717 6.25993 6.35746 6.37309 6.40861 6.46902 6.56968 6.71217 6.84416 6.87197 7.25386 7.30102 7.31367 7.51261 7.73239 7.80031 7.90108 8.06912 8.51658 9.11991 9.68965 11.17798 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.039128 B = 0.003525 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.430239 B = 7942.130283 C = 8181.892226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 H 0.073 0.927 4 C -0.110 4.110 5 C -0.116 4.116 6 C -0.146 4.146 7 C 0.088 3.912 8 H 0.071 0.929 9 N -0.687 5.687 10 C 0.072 3.928 11 C -0.059 4.059 12 C -0.115 4.115 13 C -0.128 4.128 14 C 0.034 3.966 15 C -0.505 4.505 16 H 0.059 0.941 17 C 0.054 3.946 18 N -0.898 5.898 19 Si 0.887 3.113 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.285 1.285 23 C -0.102 4.102 24 C -0.112 4.112 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.337 0.663 35 H 0.023 0.977 36 H 0.063 0.937 37 H 0.042 0.958 38 H 0.053 0.947 39 H 0.038 0.962 40 H 0.039 0.961 41 H 0.063 0.937 42 H 0.033 0.967 43 H 0.012 0.988 44 H 0.014 0.986 45 H 0.258 0.742 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.058 0.942 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.475 -10.220 1.669 21.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.091 0.909 4 C -0.147 4.147 5 C -0.154 4.154 6 C -0.185 4.185 7 C -0.022 4.022 8 H 0.089 0.911 9 N -0.317 5.317 10 C -0.057 4.057 11 C -0.059 4.059 12 C -0.172 4.172 13 C -0.185 4.185 14 C -0.004 4.004 15 C -0.543 4.543 16 H 0.077 0.923 17 C -0.147 4.147 18 N -0.538 5.538 19 Si 0.715 3.285 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.212 1.212 23 C -0.140 4.140 24 C -0.150 4.150 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.156 0.844 35 H 0.041 0.959 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.082 0.918 42 H 0.052 0.948 43 H 0.030 0.970 44 H 0.033 0.967 45 H 0.067 0.933 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.077 0.923 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.584 -9.596 1.985 21.010 hybrid contribution 1.234 -0.355 -0.573 1.406 sum -17.350 -9.951 1.413 20.051 Atomic orbital electron populations 1.21889 0.95464 1.01446 1.01473 1.20932 0.95011 1.00252 0.94913 0.90853 1.20588 0.96404 1.00146 0.97588 1.20471 0.95020 1.01652 0.98285 1.22129 0.99516 1.00082 0.96779 1.21373 0.90225 0.97867 0.92761 0.91077 1.60666 1.02623 1.17896 1.50545 1.22096 0.94025 0.95885 0.93694 1.20630 0.92360 0.96250 0.96690 1.21590 1.00579 0.99086 0.95994 1.21761 1.00829 0.96008 0.99944 1.19122 0.93624 0.93521 0.94112 1.21290 0.97182 1.27488 1.08374 0.92253 1.25021 0.98581 0.96010 0.95054 1.69987 1.34196 1.31378 1.18234 0.86613 0.84731 0.77760 0.79372 1.19776 1.21220 1.21166 1.21828 0.93764 1.00911 0.97526 1.21417 0.96891 0.99632 0.97083 0.92768 0.92922 0.92941 0.92473 0.92484 0.92118 0.92553 0.91726 0.91746 0.84385 0.95927 0.91843 0.93892 0.92801 0.94266 0.94200 0.91800 0.94820 0.96987 0.96740 0.93263 0.92043 0.92069 0.92335 0.92435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.87 37.16 0.33 -0.78 16 2 C -0.09 -0.82 2.39 -91.24 -0.22 -1.04 16 3 H 0.07 0.73 6.98 -51.93 -0.36 0.37 16 4 C -0.11 -0.98 4.73 -29.47 -0.14 -1.12 16 5 C -0.12 -1.19 5.26 -29.47 -0.16 -1.35 16 6 C -0.15 -1.65 4.93 -27.35 -0.13 -1.78 16 7 C 0.09 1.08 1.99 -68.42 -0.14 0.94 16 8 H 0.07 0.95 6.27 -51.93 -0.33 0.63 16 9 N -0.69 -10.00 5.34 -107.48 -0.57 -10.57 16 10 C 0.07 1.25 4.35 -3.83 -0.02 1.24 16 11 C -0.06 -1.19 0.60 -154.51 -0.09 -1.28 16 12 C -0.12 -2.27 8.06 37.16 0.30 -1.97 16 13 C -0.13 -2.41 7.89 37.16 0.29 -2.11 16 14 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 15 C -0.50 -13.95 7.65 -34.44 -0.26 -14.21 16 16 H 0.06 1.60 5.68 -52.48 -0.30 1.30 16 17 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 19 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 C -0.10 -1.10 5.45 -25.62 -0.14 -1.24 16 24 C -0.11 -1.02 4.89 -27.44 -0.13 -1.15 16 25 H 0.05 0.40 8.10 -51.93 -0.42 -0.02 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.50 7.48 -51.93 -0.39 0.11 16 29 H 0.06 0.48 7.97 -51.93 -0.41 0.07 16 30 H 0.06 0.67 7.47 -51.93 -0.39 0.28 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.82 6.96 -51.93 -0.36 0.46 16 33 H 0.06 0.68 7.00 -51.93 -0.36 0.32 16 34 H 0.34 4.77 6.53 -39.29 -0.26 4.51 16 35 H 0.02 0.40 7.22 -51.93 -0.37 0.03 16 36 H 0.06 1.17 8.04 -51.93 -0.42 0.75 16 37 H 0.04 0.76 7.60 -51.93 -0.39 0.37 16 38 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 42 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 43 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.06 0.68 8.12 -51.93 -0.42 0.25 16 48 H 0.06 0.50 7.68 -51.92 -0.40 0.10 16 49 H 0.06 0.51 6.65 -51.93 -0.35 0.17 16 LS Contribution 355.02 15.07 5.35 5.35 Total: -1.00 -28.56 355.02 -9.70 -38.26 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -9.48 Total: 0.24 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: -0.72 Total: -23.69 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.16 Total: -36.92 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.56 -9.70 -38.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235266642.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.930 kcal (2) G-P(sol) polarization free energy of solvation -28.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds