Wall clock time and date at job start Mon Mar 30 2020 07:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.62716 * 2 1 4 4 C 1.54236 * 109.62757 * 239.61290 * 2 1 3 5 5 C 1.45841 * 112.23833 * 160.40182 * 4 2 1 6 6 C 1.54233 * 112.56645 * 61.70779 * 5 4 2 7 7 C 1.50472 * 108.51975 * 280.04714 * 6 5 4 8 8 H 1.09004 * 108.87010 * 333.36827 * 7 6 5 9 9 N 1.46903 * 108.87924 * 214.92980 * 7 6 5 10 10 C 1.46904 * 110.99953 * 82.01475 * 9 7 6 11 11 C 1.52994 * 109.46719 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47525 * 300.00121 * 11 10 9 13 13 C 1.53001 * 109.47568 * 60.00256 * 11 10 9 14 14 C 1.53006 * 109.46905 * 180.02562 * 11 10 9 15 15 C 1.50703 * 109.47127 * 180.02562 * 14 11 10 16 16 H 1.08006 * 119.99876 * 359.97438 * 15 14 11 17 17 C 1.37874 * 120.00208 * 180.02562 * 15 14 11 18 18 N 1.31520 * 119.99567 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00220 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46965 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47159 * 119.99436 * 19 17 15 22 22 H 1.48493 * 109.47210 * 239.99435 * 19 17 15 23 23 C 1.54062 * 112.50365 * 94.14671 * 7 6 5 24 24 C 1.50474 * 109.62725 * 120.38698 * 2 1 3 25 25 H 1.08998 * 109.47370 * 300.00454 * 1 2 3 26 26 H 1.09002 * 109.47184 * 59.99966 * 1 2 3 27 27 H 1.08996 * 109.47467 * 179.97438 * 1 2 3 28 28 H 1.09003 * 108.90090 * 280.86545 * 4 2 1 29 29 H 1.08998 * 108.90040 * 39.35843 * 4 2 1 30 30 H 1.08999 * 108.78672 * 300.92486 * 5 4 2 31 31 H 1.09001 * 108.76394 * 182.47207 * 5 4 2 32 32 H 1.09001 * 109.63424 * 160.33103 * 6 5 4 33 33 H 1.09004 * 109.79305 * 39.84614 * 6 5 4 34 34 H 1.00907 * 110.99535 * 318.06742 * 9 7 6 35 35 H 1.08997 * 109.47096 * 300.00415 * 10 9 7 36 36 H 1.08998 * 109.46590 * 60.00493 * 10 9 7 37 37 H 1.08998 * 109.46921 * 60.00112 * 12 11 10 38 38 H 1.08997 * 109.47522 * 180.02562 * 12 11 10 39 39 H 1.09005 * 109.47383 * 300.00255 * 12 11 10 40 40 H 1.09006 * 109.46737 * 59.99405 * 13 11 10 41 41 H 1.08997 * 109.47502 * 179.97438 * 13 11 10 42 42 H 1.08998 * 109.46982 * 299.99951 * 13 11 10 43 43 H 1.08999 * 109.46924 * 299.99615 * 14 11 10 44 44 H 1.08991 * 109.47028 * 60.00296 * 14 11 10 45 45 H 0.97007 * 119.99266 * 180.02562 * 18 17 15 46 46 H 1.08994 * 108.81241 * 197.42471 * 23 7 6 47 47 H 1.09004 * 108.81178 * 79.14400 * 23 7 6 48 48 H 1.09008 * 108.87759 * 334.83068 * 24 2 1 49 49 H 1.09004 * 108.87733 * 93.27409 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0481 -0.7349 -1.2532 5 6 3.4313 -0.3912 -1.5622 6 6 4.4057 -0.7868 -0.4340 7 6 4.3378 0.2597 0.6451 8 1 4.0313 1.2061 0.1995 9 7 5.6742 0.4244 1.2323 10 6 6.5051 1.3131 0.4089 11 6 7.8862 1.4594 1.0507 12 6 7.7369 2.0545 2.4523 13 6 8.5514 0.0851 1.1484 14 6 8.7514 2.3855 0.1935 15 6 10.1120 2.5291 0.8253 16 1 10.3370 2.0119 1.7464 17 6 11.0692 3.3216 0.2281 18 7 10.7950 3.9517 -0.8932 19 14 12.7555 3.5002 1.0116 20 1 12.8098 2.6951 2.2582 21 1 13.7943 3.0181 0.0661 22 1 13.0033 4.9286 1.3330 23 6 3.3442 -0.1098 1.7631 24 6 2.0354 -0.7169 1.2226 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.9836 -1.8098 -1.0841 29 1 1.4157 -0.4744 -2.1019 30 1 3.4978 0.6846 -1.7249 31 1 3.7241 -0.9050 -2.4778 32 1 5.4204 -0.8407 -0.8285 33 1 4.1208 -1.7554 -0.0231 34 1 6.1232 -0.4694 1.3657 35 1 6.6118 0.8890 -0.5895 36 1 6.0309 2.2921 0.3390 37 1 7.1204 1.3951 3.0632 38 1 8.7208 2.1591 2.9094 39 1 7.2630 3.0337 2.3828 40 1 8.6578 -0.3389 0.1498 41 1 9.5355 0.1893 1.6053 42 1 7.9349 -0.5744 1.7593 43 1 8.8578 1.9619 -0.8052 44 1 8.2774 3.3645 0.1243 45 1 11.4687 4.5090 -1.3136 46 1 3.1062 0.7884 2.3327 47 1 3.8173 -0.8310 2.4296 48 1 1.2746 -0.6652 2.0016 49 1 2.2094 -1.7632 0.9712 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235266642.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:46 Heat of formation + Delta-G solvation = -59.569181 kcal Electronic energy + Delta-G solvation = -21588.353853 eV Core-core repulsion = 18740.733249 eV Total energy + Delta-G solvation = -2847.620604 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -40.53940 -38.80648 -36.04621 -34.38667 -33.51038 -31.70012 -29.00600 -27.99294 -27.86557 -26.71946 -25.23537 -24.09932 -23.36151 -21.49120 -20.09694 -19.36321 -18.33621 -16.82833 -16.46516 -16.31591 -15.97698 -15.49304 -15.27683 -15.22553 -14.64632 -14.49545 -14.09047 -13.91723 -13.74246 -13.61369 -13.53447 -13.26710 -12.90256 -12.81691 -12.66966 -12.49978 -12.29217 -12.22372 -12.15506 -11.91565 -11.90088 -11.61710 -11.45917 -11.35732 -11.26363 -11.14353 -10.99400 -10.84882 -10.65386 -10.51575 -9.17946 -8.14383 -6.21462 1.39784 1.40664 1.53088 2.43443 3.19505 3.26505 3.65932 3.84748 4.05569 4.11613 4.18772 4.23693 4.27650 4.28336 4.39229 4.47265 4.53478 4.63827 4.74687 4.77991 4.80625 4.88012 4.91808 4.96681 5.04545 5.07161 5.08955 5.16158 5.19421 5.21886 5.22533 5.25221 5.35407 5.43129 5.43206 5.50730 5.51789 5.53194 5.54325 5.58639 5.65788 5.67880 5.87809 5.92821 6.19529 6.38020 6.62178 6.93942 7.45957 8.98277 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.039128 B = 0.003525 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.430239 B = 7942.130283 C = 8181.892226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 H 0.058 0.942 4 C -0.108 4.108 5 C -0.114 4.114 6 C -0.141 4.141 7 C 0.090 3.910 8 H 0.056 0.944 9 N -0.683 5.683 10 C 0.087 3.913 11 C -0.056 4.056 12 C -0.105 4.105 13 C -0.120 4.120 14 C 0.041 3.959 15 C -0.513 4.513 16 H 0.066 0.934 17 C -0.006 4.006 18 N -0.939 5.939 19 Si 0.957 3.043 20 H -0.260 1.260 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.096 4.096 24 C -0.107 4.107 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.343 0.657 35 H 0.015 0.985 36 H 0.049 0.951 37 H 0.068 0.932 38 H 0.038 0.962 39 H 0.027 0.973 40 H 0.035 0.965 41 H 0.046 0.954 42 H 0.067 0.933 43 H -0.018 1.018 44 H -0.018 1.018 45 H 0.259 0.741 46 H 0.053 0.947 47 H 0.064 0.936 48 H 0.068 0.932 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.368 -11.988 3.007 22.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 H 0.076 0.924 4 C -0.145 4.145 5 C -0.152 4.152 6 C -0.180 4.180 7 C -0.019 4.019 8 H 0.075 0.925 9 N -0.314 5.314 10 C -0.043 4.043 11 C -0.057 4.057 12 C -0.163 4.163 13 C -0.178 4.178 14 C 0.003 3.997 15 C -0.551 4.551 16 H 0.084 0.916 17 C -0.202 4.202 18 N -0.580 5.580 19 Si 0.782 3.218 20 H -0.184 1.184 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.135 4.135 24 C -0.145 4.145 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.163 0.837 35 H 0.033 0.967 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.057 0.943 39 H 0.047 0.953 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.086 0.914 43 H 0.001 0.999 44 H 0.000 1.000 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.082 0.918 48 H 0.087 0.913 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.491 -11.381 3.337 22.816 hybrid contribution 1.467 0.214 -1.020 1.799 sum -18.025 -11.167 2.316 21.330 Atomic orbital electron populations 1.21858 0.94297 1.02086 1.01746 1.20919 0.95994 0.99329 0.94886 0.92395 1.20562 0.95375 1.00640 0.97907 1.20452 0.95840 1.00795 0.98089 1.22047 0.98944 1.00321 0.96661 1.21413 0.89159 0.97704 0.93642 0.92533 1.60621 1.03093 1.17773 1.49907 1.21760 0.92932 0.96027 0.93542 1.20508 0.93019 0.95993 0.96144 1.21489 1.00028 0.99093 0.95662 1.21666 1.00359 0.95454 1.00283 1.19000 0.94090 0.92947 0.93650 1.21654 0.97971 1.27013 1.08441 0.91558 1.25939 1.02882 0.95815 0.95580 1.70128 1.35662 1.32365 1.19861 0.85510 0.79596 0.77843 0.78807 1.18401 1.20777 1.20843 1.21771 0.94188 1.00751 0.96744 1.21380 0.96028 0.99730 0.97341 0.92504 0.92743 0.92072 0.91549 0.91835 0.93503 0.92244 0.93316 0.90348 0.83713 0.96657 0.93243 0.91341 0.94288 0.95333 0.94571 0.93460 0.91382 0.99920 0.99996 0.93181 0.92838 0.91761 0.91299 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.87 71.98 0.64 -1.23 16 2 C -0.09 -1.48 2.39 -11.19 -0.03 -1.51 16 3 H 0.06 1.11 6.98 -2.39 -0.02 1.10 16 4 C -0.11 -1.72 4.73 28.82 0.14 -1.58 16 5 C -0.11 -2.23 5.26 28.82 0.15 -2.08 16 6 C -0.14 -3.00 4.93 30.19 0.15 -2.85 16 7 C 0.09 2.13 1.99 44.46 0.09 2.22 16 8 H 0.06 1.51 6.27 -2.38 -0.01 1.50 16 9 N -0.68 -19.06 5.34 -493.95 -2.64 -21.69 16 10 C 0.09 3.07 4.35 86.30 0.38 3.44 16 11 C -0.06 -2.28 0.60 -52.18 -0.03 -2.32 16 12 C -0.11 -4.10 8.06 71.98 0.58 -3.52 16 13 C -0.12 -4.40 7.89 71.98 0.57 -3.84 16 14 C 0.04 2.16 4.04 29.85 0.12 2.28 16 15 C -0.51 -28.80 7.65 25.60 0.20 -28.60 16 16 H 0.07 3.57 5.68 -2.91 -0.02 3.56 16 17 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 18 N -0.94 -58.14 13.29 21.45 0.28 -57.86 16 19 Si 0.96 44.95 29.54 68.60 2.03 46.97 16 20 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 22 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 23 C -0.10 -1.90 5.45 31.31 0.17 -1.73 16 24 C -0.11 -1.68 4.89 30.14 0.15 -1.53 16 25 H 0.06 0.72 8.10 -2.39 -0.02 0.70 16 26 H 0.05 0.69 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.96 7.48 -2.39 -0.02 0.95 16 29 H 0.06 0.95 7.97 -2.39 -0.02 0.93 16 30 H 0.05 1.04 7.47 -2.39 -0.02 1.02 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.05 1.20 6.96 -2.39 -0.02 1.18 16 33 H 0.08 1.46 7.00 -2.39 -0.02 1.44 16 34 H 0.34 8.93 6.53 -89.69 -0.59 8.35 16 35 H 0.02 0.56 7.22 -2.39 -0.02 0.54 16 36 H 0.05 1.88 8.04 -2.39 -0.02 1.86 16 37 H 0.07 2.30 7.60 -2.39 -0.02 2.28 16 38 H 0.04 1.61 6.62 -2.39 -0.02 1.59 16 39 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.05 1.88 6.62 -2.39 -0.02 1.86 16 42 H 0.07 2.01 6.57 -2.39 -0.02 2.00 16 43 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 44 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 45 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 46 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.06 1.25 8.12 -2.38 -0.02 1.23 16 48 H 0.07 0.97 7.68 -2.38 -0.02 0.95 16 49 H 0.06 0.95 6.65 -2.39 -0.02 0.93 16 Total: -1.00 -62.25 355.02 3.70 -58.55 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.30 Total: 16.73 kcal Atomic # 6 Polarization: -46.44 SS G_CDS: 3.73 Total: -42.71 kcal Atomic # 7 Polarization: -77.20 SS G_CDS: -2.35 Total: -79.55 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -62.25 3.70 -58.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235266642.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.014 kcal (2) G-P(sol) polarization free energy of solvation -62.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds