Wall clock time and date at job start Mon Mar 30 2020 07:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 108.87369 * 2 1 4 4 C 1.54234 * 108.89560 * 241.38987 * 2 1 3 5 5 C 1.50471 * 108.51734 * 159.25085 * 4 2 1 6 6 C 1.54073 * 112.49487 * 94.15632 * 5 4 2 7 7 C 1.54064 * 112.81890 * 318.28650 * 6 5 4 8 8 H 1.08995 * 108.87815 * 78.95632 * 7 6 5 9 9 N 1.46895 * 108.87778 * 197.50754 * 7 6 5 10 10 C 1.46906 * 110.99789 * 276.43666 * 9 7 6 11 11 C 1.53002 * 109.47053 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47454 * 300.00316 * 11 10 9 13 13 C 1.52997 * 109.46978 * 60.00394 * 11 10 9 14 14 C 1.52996 * 109.46891 * 179.97438 * 11 10 9 15 15 C 1.50703 * 109.46946 * 180.02562 * 14 11 10 16 16 H 1.07998 * 120.00275 * 0.02562 * 15 14 11 17 17 C 1.37885 * 119.99908 * 180.02562 * 15 14 11 18 18 N 1.31508 * 119.99919 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99891 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46856 * 90.00518 * 19 17 15 21 21 H 1.48503 * 109.46872 * 210.00129 * 19 17 15 22 22 H 1.48501 * 109.47227 * 330.00538 * 19 17 15 23 23 C 1.50475 * 112.41643 * 318.23126 * 7 6 5 24 24 C 1.45545 * 108.89187 * 118.50631 * 2 1 3 25 25 H 1.08996 * 109.47040 * 178.60773 * 1 2 3 26 26 H 1.08999 * 109.46967 * 298.60373 * 1 2 3 27 27 H 1.08999 * 109.47092 * 58.60678 * 1 2 3 28 28 H 1.09008 * 109.62761 * 39.54920 * 4 2 1 29 29 H 1.09001 * 109.79575 * 279.06164 * 4 2 1 30 30 H 1.09003 * 108.87994 * 333.38198 * 5 4 2 31 31 H 1.09005 * 108.80080 * 214.87492 * 5 4 2 32 32 H 1.09000 * 108.81024 * 197.42355 * 6 5 4 33 33 H 1.09005 * 108.72596 * 79.08775 * 6 5 4 34 34 H 1.00902 * 111.00273 * 40.39189 * 9 7 6 35 35 H 1.08992 * 109.47459 * 299.99826 * 10 9 7 36 36 H 1.09004 * 109.47040 * 59.99976 * 10 9 7 37 37 H 1.09002 * 109.47067 * 59.99861 * 12 11 10 38 38 H 1.09000 * 109.47312 * 179.97438 * 12 11 10 39 39 H 1.09004 * 109.46930 * 299.99944 * 12 11 10 40 40 H 1.08998 * 109.47624 * 59.99457 * 13 11 10 41 41 H 1.09000 * 109.47140 * 179.97438 * 13 11 10 42 42 H 1.09002 * 109.47045 * 299.99833 * 13 11 10 43 43 H 1.09001 * 109.47372 * 300.00036 * 14 11 10 44 44 H 1.09004 * 109.47108 * 60.00292 * 14 11 10 45 45 H 0.96997 * 120.00191 * 179.97438 * 18 17 15 46 46 H 1.09004 * 109.63013 * 213.90766 * 23 7 6 47 47 H 1.09001 * 109.63164 * 334.48891 * 23 7 6 48 48 H 1.09004 * 108.89529 * 303.44241 * 24 2 1 49 49 H 1.08998 * 108.90244 * 62.03447 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8826 1.0314 0.0000 4 6 2.0295 -0.6987 -1.2811 5 6 3.4466 -0.2646 -1.5407 6 6 4.4804 -1.2413 -0.9481 7 6 4.0936 -1.7405 0.4572 8 1 3.3422 -2.5240 0.3587 9 7 5.2849 -2.3041 1.1060 10 6 5.4974 -3.6987 0.6962 11 6 6.7446 -4.2498 1.3903 12 6 7.9614 -3.4109 0.9945 13 6 6.5537 -4.1874 2.9071 14 6 6.9655 -5.7025 0.9641 15 6 8.1936 -6.2455 1.6482 16 1 8.7597 -5.6175 2.3202 17 6 8.5946 -7.5442 1.4163 18 7 9.6660 -8.0182 2.0137 19 14 7.6151 -8.6308 0.2546 20 1 8.1445 -8.4838 -1.1251 21 1 7.7354 -10.0477 0.6825 22 1 6.1870 -8.2246 0.2827 23 6 3.5407 -0.6421 1.3244 24 6 2.0013 -0.6572 1.2101 25 1 -0.3633 -1.0273 -0.0250 26 1 -0.3633 0.4920 0.9022 27 1 -0.3633 0.5353 -0.8772 28 1 1.3990 -0.4135 -2.1233 29 1 1.9962 -1.7802 -1.1486 30 1 3.5999 0.7208 -1.1006 31 1 3.6018 -0.1975 -2.6176 32 1 5.4456 -0.7384 -0.8892 33 1 4.5720 -2.1000 -1.6133 34 1 6.1010 -1.7425 0.9141 35 1 4.6305 -4.2963 0.9779 36 1 5.6339 -3.7432 -0.3843 37 1 7.8037 -2.3761 1.2986 38 1 8.8498 -3.8032 1.4894 39 1 8.0974 -3.4554 -0.0861 40 1 5.6869 -4.7850 3.1891 41 1 7.4420 -4.5804 3.4016 42 1 6.3960 -3.1526 3.2111 43 1 6.0987 -6.2999 1.2465 44 1 7.1014 -5.7474 -0.1165 45 1 9.9479 -8.9320 1.8508 46 1 3.8321 -0.8120 2.3609 47 1 3.9252 0.3202 0.9860 48 1 1.5778 -0.1482 2.0760 49 1 1.6581 -1.6917 1.2066 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235286552.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:50 Heat of formation + Delta-G solvation = -41.677155 kcal Electronic energy + Delta-G solvation = -21613.437106 eV Core-core repulsion = 18766.592358 eV Total energy + Delta-G solvation = -2846.844748 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.65555 -37.50920 -34.96855 -32.71612 -32.23820 -30.66511 -27.76005 -27.03838 -26.33320 -25.42401 -23.98647 -22.93424 -21.79137 -20.40006 -19.47576 -17.77022 -16.76067 -15.93705 -15.21348 -15.15087 -14.54237 -14.34063 -14.10924 -13.94714 -13.44401 -13.16328 -12.98118 -12.90301 -12.59562 -12.47462 -12.21189 -12.11750 -11.90777 -11.65978 -11.15555 -11.00599 -10.98674 -10.82250 -10.79860 -10.65050 -10.48429 -10.46724 -10.42912 -10.30770 -10.25397 -9.78313 -9.64036 -9.22694 -8.86567 -8.47668 -8.04637 -5.97992 -3.93851 3.33320 3.41084 3.45017 4.36946 4.41222 4.50175 4.54491 4.76834 4.93781 4.99968 5.12725 5.15593 5.34797 5.35415 5.42475 5.47273 5.54143 5.56479 5.64102 5.69500 5.76685 5.79772 5.85838 5.89142 5.93827 6.00873 6.09118 6.13820 6.15641 6.20148 6.26265 6.32716 6.35572 6.40547 6.47867 6.63307 6.74003 6.83722 7.12165 7.18042 7.23349 7.36746 7.40962 7.50801 7.72159 7.88224 8.62387 9.08240 9.65353 11.15222 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.030601 B = 0.003789 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.770408 B = 7388.668546 C = 7606.185389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.089 4.089 3 H 0.065 0.935 4 C -0.113 4.113 5 C -0.113 4.113 6 C -0.145 4.145 7 C 0.088 3.912 8 H 0.071 0.929 9 N -0.682 5.682 10 C 0.067 3.933 11 C -0.049 4.049 12 C -0.130 4.130 13 C -0.117 4.117 14 C -0.004 4.004 15 C -0.506 4.506 16 H 0.078 0.922 17 C 0.064 3.936 18 N -0.906 5.906 19 Si 0.875 3.125 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.267 1.267 23 C -0.106 4.106 24 C -0.113 4.113 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.338 0.662 35 H 0.063 0.937 36 H 0.021 0.979 37 H 0.035 0.965 38 H 0.069 0.931 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.059 0.941 42 H 0.044 0.956 43 H 0.014 0.986 44 H 0.007 0.993 45 H 0.261 0.739 46 H 0.078 0.922 47 H 0.058 0.942 48 H 0.058 0.942 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.834 17.184 -5.316 23.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.107 4.107 3 H 0.083 0.917 4 C -0.150 4.150 5 C -0.151 4.151 6 C -0.185 4.185 7 C -0.023 4.023 8 H 0.090 0.910 9 N -0.313 5.313 10 C -0.061 4.061 11 C -0.050 4.050 12 C -0.187 4.187 13 C -0.174 4.174 14 C -0.042 4.042 15 C -0.544 4.544 16 H 0.096 0.904 17 C -0.136 4.136 18 N -0.546 5.546 19 Si 0.703 3.297 20 H -0.205 1.205 21 H -0.216 1.216 22 H -0.191 1.191 23 C -0.144 4.144 24 C -0.151 4.151 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.157 0.843 35 H 0.082 0.918 36 H 0.039 0.961 37 H 0.054 0.946 38 H 0.088 0.912 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.032 0.968 44 H 0.025 0.975 45 H 0.071 0.929 46 H 0.096 0.904 47 H 0.077 0.923 48 H 0.077 0.923 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.052 16.839 -4.709 23.736 hybrid contribution -0.071 -0.710 -1.710 1.853 sum -16.124 16.129 -6.420 23.692 Atomic orbital electron populations 1.21952 0.95700 1.01732 1.01367 1.20099 0.95366 0.99913 0.95371 0.91666 1.21409 0.95896 1.00803 0.96937 1.21262 0.94612 0.99209 1.00032 1.22691 0.98694 0.99129 0.97947 1.21436 0.93597 0.96689 0.90531 0.91042 1.60913 1.06095 1.03545 1.60716 1.22149 0.99098 0.88356 0.96541 1.20419 0.92110 0.96653 0.95787 1.21776 0.99458 0.97348 1.00134 1.21601 1.01197 0.99693 0.94915 1.19627 0.97477 0.91324 0.95776 1.21151 1.09035 0.97507 1.26702 0.90426 1.25019 0.94831 0.97966 0.95800 1.69906 1.24621 1.16206 1.43872 0.86852 0.81413 0.79895 0.81530 1.20538 1.21552 1.19141 1.21400 0.94072 0.98033 1.00884 1.20541 0.96085 1.01152 0.97309 0.92759 0.92892 0.92968 0.92180 0.91639 0.92134 0.92712 0.92268 0.92479 0.84271 0.91822 0.96050 0.94588 0.91239 0.94249 0.94296 0.92226 0.93653 0.96772 0.97486 0.92915 0.90380 0.92307 0.92347 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.97 37.16 0.33 -0.77 16 2 C -0.09 -0.73 2.22 -93.49 -0.21 -0.94 16 3 H 0.06 0.53 7.47 -51.93 -0.39 0.14 16 4 C -0.11 -0.97 4.97 -27.35 -0.14 -1.11 16 5 C -0.11 -1.02 5.31 -27.43 -0.15 -1.16 16 6 C -0.15 -1.55 5.13 -25.62 -0.13 -1.69 16 7 C 0.09 1.02 1.98 -68.42 -0.14 0.88 16 8 H 0.07 0.90 6.24 -51.93 -0.32 0.58 16 9 N -0.68 -9.45 5.28 -107.48 -0.57 -10.02 16 10 C 0.07 1.11 4.42 -3.82 -0.02 1.10 16 11 C -0.05 -0.96 0.60 -154.51 -0.09 -1.05 16 12 C -0.13 -2.41 7.89 37.16 0.29 -2.11 16 13 C -0.12 -2.27 8.06 37.16 0.30 -1.97 16 14 C 0.00 -0.10 3.11 -27.88 -0.09 -0.19 16 15 C -0.51 -14.09 8.20 -34.44 -0.28 -14.37 16 16 H 0.08 2.30 5.92 -52.49 -0.31 1.99 16 17 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 18 N -0.91 -27.99 13.96 55.43 0.77 -27.22 16 19 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 23 C -0.11 -1.09 5.30 -27.27 -0.14 -1.24 16 24 C -0.11 -1.03 4.45 -29.53 -0.13 -1.16 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.37 8.11 -51.93 -0.42 -0.05 16 27 H 0.05 0.35 8.12 -51.93 -0.42 -0.07 16 28 H 0.06 0.47 7.97 -51.92 -0.41 0.06 16 29 H 0.06 0.63 6.99 -51.93 -0.36 0.26 16 30 H 0.06 0.53 6.63 -51.93 -0.34 0.18 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.64 7.71 -51.93 -0.40 0.24 16 33 H 0.06 0.67 7.85 -51.93 -0.41 0.26 16 34 H 0.34 4.58 6.25 -39.29 -0.25 4.33 16 35 H 0.06 1.09 8.04 -51.93 -0.42 0.67 16 36 H 0.02 0.35 7.68 -51.93 -0.40 -0.05 16 37 H 0.04 0.57 6.57 -51.93 -0.34 0.22 16 38 H 0.07 1.46 6.62 -51.93 -0.34 1.11 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 1.29 6.61 -51.93 -0.34 0.94 16 42 H 0.04 0.79 7.60 -51.93 -0.39 0.40 16 43 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 44 H 0.01 0.17 7.57 -51.93 -0.39 -0.23 16 45 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 46 H 0.08 0.90 7.95 -51.93 -0.41 0.49 16 47 H 0.06 0.58 6.97 -51.93 -0.36 0.21 16 48 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 49 H 0.06 0.60 7.46 -51.93 -0.39 0.21 16 LS Contribution 352.05 15.07 5.31 5.31 Total: -1.00 -28.89 352.05 -9.33 -38.21 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -9.49 Total: 0.42 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: -0.68 Total: -24.01 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.21 Total: -37.24 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.89 -9.33 -38.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235286552.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.465 kcal (2) G-P(sol) polarization free energy of solvation -28.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds