Wall clock time and date at job start Mon Mar 30 2020 07:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 108.87369 * 2 1 4 4 C 1.54234 * 108.89560 * 241.38987 * 2 1 3 5 5 C 1.50471 * 108.51734 * 159.25085 * 4 2 1 6 6 C 1.54073 * 112.49487 * 94.15632 * 5 4 2 7 7 C 1.54064 * 112.81890 * 318.28650 * 6 5 4 8 8 H 1.08995 * 108.87815 * 78.95632 * 7 6 5 9 9 N 1.46895 * 108.87778 * 197.50754 * 7 6 5 10 10 C 1.46906 * 110.99789 * 276.43666 * 9 7 6 11 11 C 1.53002 * 109.47053 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47454 * 300.00316 * 11 10 9 13 13 C 1.52997 * 109.46978 * 60.00394 * 11 10 9 14 14 C 1.52996 * 109.46891 * 179.97438 * 11 10 9 15 15 C 1.50703 * 109.46946 * 180.02562 * 14 11 10 16 16 H 1.07998 * 120.00275 * 0.02562 * 15 14 11 17 17 C 1.37885 * 119.99908 * 180.02562 * 15 14 11 18 18 N 1.31508 * 119.99919 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99891 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46856 * 90.00518 * 19 17 15 21 21 H 1.48503 * 109.46872 * 210.00129 * 19 17 15 22 22 H 1.48501 * 109.47227 * 330.00538 * 19 17 15 23 23 C 1.50475 * 112.41643 * 318.23126 * 7 6 5 24 24 C 1.45545 * 108.89187 * 118.50631 * 2 1 3 25 25 H 1.08996 * 109.47040 * 178.60773 * 1 2 3 26 26 H 1.08999 * 109.46967 * 298.60373 * 1 2 3 27 27 H 1.08999 * 109.47092 * 58.60678 * 1 2 3 28 28 H 1.09008 * 109.62761 * 39.54920 * 4 2 1 29 29 H 1.09001 * 109.79575 * 279.06164 * 4 2 1 30 30 H 1.09003 * 108.87994 * 333.38198 * 5 4 2 31 31 H 1.09005 * 108.80080 * 214.87492 * 5 4 2 32 32 H 1.09000 * 108.81024 * 197.42355 * 6 5 4 33 33 H 1.09005 * 108.72596 * 79.08775 * 6 5 4 34 34 H 1.00902 * 111.00273 * 40.39189 * 9 7 6 35 35 H 1.08992 * 109.47459 * 299.99826 * 10 9 7 36 36 H 1.09004 * 109.47040 * 59.99976 * 10 9 7 37 37 H 1.09002 * 109.47067 * 59.99861 * 12 11 10 38 38 H 1.09000 * 109.47312 * 179.97438 * 12 11 10 39 39 H 1.09004 * 109.46930 * 299.99944 * 12 11 10 40 40 H 1.08998 * 109.47624 * 59.99457 * 13 11 10 41 41 H 1.09000 * 109.47140 * 179.97438 * 13 11 10 42 42 H 1.09002 * 109.47045 * 299.99833 * 13 11 10 43 43 H 1.09001 * 109.47372 * 300.00036 * 14 11 10 44 44 H 1.09004 * 109.47108 * 60.00292 * 14 11 10 45 45 H 0.96997 * 120.00191 * 179.97438 * 18 17 15 46 46 H 1.09004 * 109.63013 * 213.90766 * 23 7 6 47 47 H 1.09001 * 109.63164 * 334.48891 * 23 7 6 48 48 H 1.09004 * 108.89529 * 303.44241 * 24 2 1 49 49 H 1.08998 * 108.90244 * 62.03447 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8826 1.0314 0.0000 4 6 2.0295 -0.6987 -1.2811 5 6 3.4466 -0.2646 -1.5407 6 6 4.4804 -1.2413 -0.9481 7 6 4.0936 -1.7405 0.4572 8 1 3.3422 -2.5240 0.3587 9 7 5.2849 -2.3041 1.1060 10 6 5.4974 -3.6987 0.6962 11 6 6.7446 -4.2498 1.3903 12 6 7.9614 -3.4109 0.9945 13 6 6.5537 -4.1874 2.9071 14 6 6.9655 -5.7025 0.9641 15 6 8.1936 -6.2455 1.6482 16 1 8.7597 -5.6175 2.3202 17 6 8.5946 -7.5442 1.4163 18 7 9.6660 -8.0182 2.0137 19 14 7.6151 -8.6308 0.2546 20 1 8.1445 -8.4838 -1.1251 21 1 7.7354 -10.0477 0.6825 22 1 6.1870 -8.2246 0.2827 23 6 3.5407 -0.6421 1.3244 24 6 2.0013 -0.6572 1.2101 25 1 -0.3633 -1.0273 -0.0250 26 1 -0.3633 0.4920 0.9022 27 1 -0.3633 0.5353 -0.8772 28 1 1.3990 -0.4135 -2.1233 29 1 1.9962 -1.7802 -1.1486 30 1 3.5999 0.7208 -1.1006 31 1 3.6018 -0.1975 -2.6176 32 1 5.4456 -0.7384 -0.8892 33 1 4.5720 -2.1000 -1.6133 34 1 6.1010 -1.7425 0.9141 35 1 4.6305 -4.2963 0.9779 36 1 5.6339 -3.7432 -0.3843 37 1 7.8037 -2.3761 1.2986 38 1 8.8498 -3.8032 1.4894 39 1 8.0974 -3.4554 -0.0861 40 1 5.6869 -4.7850 3.1891 41 1 7.4420 -4.5804 3.4016 42 1 6.3960 -3.1526 3.2111 43 1 6.0987 -6.2999 1.2465 44 1 7.1014 -5.7474 -0.1165 45 1 9.9479 -8.9320 1.8508 46 1 3.8321 -0.8120 2.3609 47 1 3.9252 0.3202 0.9860 48 1 1.5778 -0.1482 2.0760 49 1 1.6581 -1.6917 1.2066 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235286552.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:49 Heat of formation + Delta-G solvation = -56.859955 kcal Electronic energy + Delta-G solvation = -21614.095482 eV Core-core repulsion = 18766.592358 eV Total energy + Delta-G solvation = -2847.503123 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.51684 -38.89430 -36.12804 -34.42394 -33.35716 -31.76797 -29.55902 -27.99421 -27.87965 -26.63443 -25.12716 -23.84510 -23.39789 -21.13589 -20.33224 -19.36199 -18.87171 -16.90009 -16.45794 -16.04029 -15.92469 -15.54918 -15.34597 -15.21052 -14.86438 -14.30562 -14.29072 -13.91458 -13.88549 -13.72055 -13.44695 -13.17568 -12.90041 -12.84124 -12.68368 -12.58225 -12.38342 -12.21561 -12.08496 -11.86650 -11.78412 -11.57365 -11.38493 -11.33406 -11.25119 -11.18165 -11.05192 -10.93472 -10.73081 -10.70662 -9.17441 -8.22432 -6.22574 1.34248 1.36438 1.47564 2.38705 3.12483 3.32160 3.66174 3.80797 4.06526 4.10564 4.14519 4.22296 4.26470 4.33913 4.38235 4.41748 4.59717 4.62223 4.74256 4.77966 4.82939 4.88824 4.90476 4.91855 5.00395 5.04461 5.11066 5.11568 5.13551 5.18843 5.20248 5.32541 5.33625 5.36814 5.42322 5.44124 5.46167 5.51526 5.53361 5.60351 5.63237 5.65562 5.76523 5.82287 6.24514 6.42457 6.61203 6.84720 7.39878 8.93886 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.030601 B = 0.003789 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.770408 B = 7388.668546 C = 7606.185389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 H 0.071 0.929 4 C -0.112 4.112 5 C -0.109 4.109 6 C -0.142 4.142 7 C 0.091 3.909 8 H 0.062 0.938 9 N -0.682 5.682 10 C 0.082 3.918 11 C -0.049 4.049 12 C -0.123 4.123 13 C -0.107 4.107 14 C -0.003 4.003 15 C -0.503 4.503 16 H 0.045 0.955 17 C 0.001 3.999 18 N -0.955 5.955 19 Si 0.940 3.060 20 H -0.270 1.270 21 H -0.287 1.287 22 H -0.251 1.251 23 C -0.101 4.101 24 C -0.109 4.109 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.341 0.659 35 H 0.059 0.941 36 H 0.023 0.977 37 H 0.066 0.934 38 H 0.035 0.965 39 H 0.043 0.957 40 H 0.035 0.965 41 H 0.027 0.973 42 H 0.067 0.933 43 H 0.011 0.989 44 H 0.010 0.990 45 H 0.262 0.738 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.065 0.935 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.999 18.780 -6.697 26.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.106 4.106 3 H 0.089 0.911 4 C -0.150 4.150 5 C -0.147 4.147 6 C -0.181 4.181 7 C -0.018 4.018 8 H 0.080 0.920 9 N -0.314 5.314 10 C -0.048 4.048 11 C -0.050 4.050 12 C -0.180 4.180 13 C -0.165 4.165 14 C -0.040 4.040 15 C -0.541 4.541 16 H 0.063 0.937 17 C -0.195 4.195 18 N -0.597 5.597 19 Si 0.765 3.235 20 H -0.195 1.195 21 H -0.213 1.213 22 H -0.175 1.175 23 C -0.139 4.139 24 C -0.146 4.146 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.161 0.839 35 H 0.078 0.922 36 H 0.042 0.958 37 H 0.085 0.915 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.046 0.954 42 H 0.086 0.914 43 H 0.029 0.971 44 H 0.028 0.972 45 H 0.071 0.929 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.083 0.917 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.234 18.459 -6.094 26.652 hybrid contribution 0.636 -1.141 -1.217 1.785 sum -17.598 17.318 -7.311 25.750 Atomic orbital electron populations 1.21932 0.95020 1.01665 1.01984 1.20072 0.95934 0.99936 0.94615 0.91080 1.21404 0.95896 1.00101 0.97555 1.21235 0.94237 0.98945 1.00294 1.22632 0.99369 0.99117 0.96977 1.21461 0.92261 0.96784 0.91328 0.91977 1.60877 1.07032 1.02283 1.61179 1.21852 0.96977 0.89817 0.96109 1.20363 0.94169 0.94464 0.95984 1.21680 0.97545 0.98764 1.00007 1.21497 0.99455 1.00760 0.94766 1.19592 0.95125 0.93994 0.95325 1.21434 1.09865 0.97136 1.25700 0.93700 1.25918 0.95965 0.99767 0.97811 1.70058 1.26737 1.16781 1.46075 0.85807 0.80561 0.77753 0.79401 1.19544 1.21340 1.17486 1.21336 0.94897 0.97805 0.99829 1.20506 0.95131 1.00815 0.98192 0.93183 0.92459 0.92215 0.91231 0.92794 0.91379 0.92178 0.92154 0.93622 0.83850 0.92243 0.95840 0.91517 0.94539 0.93837 0.94554 0.95378 0.91433 0.97086 0.97210 0.92872 0.91482 0.91401 0.91669 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.97 71.98 0.65 -1.19 16 2 C -0.09 -1.21 2.22 -12.65 -0.03 -1.24 16 3 H 0.07 0.94 7.47 -2.39 -0.02 0.92 16 4 C -0.11 -1.66 4.97 30.19 0.15 -1.51 16 5 C -0.11 -1.68 5.31 30.14 0.16 -1.52 16 6 C -0.14 -2.71 5.13 31.32 0.16 -2.55 16 7 C 0.09 1.94 1.98 44.46 0.09 2.03 16 8 H 0.06 1.46 6.24 -2.39 -0.01 1.45 16 9 N -0.68 -17.49 5.28 -493.95 -2.61 -20.10 16 10 C 0.08 2.56 4.42 86.30 0.38 2.94 16 11 C -0.05 -1.89 0.60 -52.18 -0.03 -1.92 16 12 C -0.12 -4.46 7.89 71.98 0.57 -3.89 16 13 C -0.11 -4.15 8.06 71.98 0.58 -3.57 16 14 C 0.00 -0.12 3.11 29.85 0.09 -0.03 16 15 C -0.50 -28.68 8.20 25.60 0.21 -28.47 16 16 H 0.04 2.80 5.92 -2.91 -0.02 2.78 16 17 C 0.00 0.06 5.47 84.66 0.46 0.53 16 18 N -0.95 -60.63 13.96 21.45 0.30 -60.33 16 19 Si 0.94 45.31 27.47 68.60 1.88 47.19 16 20 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 22 H -0.25 -11.36 6.54 99.48 0.65 -10.71 16 23 C -0.10 -1.85 5.30 30.24 0.16 -1.69 16 24 C -0.11 -1.75 4.45 28.78 0.13 -1.62 16 25 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.66 8.11 -2.39 -0.02 0.64 16 27 H 0.06 0.65 8.12 -2.39 -0.02 0.63 16 28 H 0.07 0.91 7.97 -2.38 -0.02 0.89 16 29 H 0.05 0.93 6.99 -2.39 -0.02 0.92 16 30 H 0.07 0.96 6.63 -2.39 -0.02 0.95 16 31 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.06 1.15 7.71 -2.39 -0.02 1.13 16 33 H 0.04 0.98 7.85 -2.38 -0.02 0.96 16 34 H 0.34 8.36 6.25 -89.69 -0.56 7.80 16 35 H 0.06 1.92 8.04 -2.39 -0.02 1.91 16 36 H 0.02 0.73 7.68 -2.38 -0.02 0.71 16 37 H 0.07 1.99 6.57 -2.39 -0.02 1.97 16 38 H 0.04 1.55 6.62 -2.39 -0.02 1.54 16 39 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.03 1.23 6.61 -2.39 -0.02 1.21 16 42 H 0.07 2.28 7.60 -2.39 -0.02 2.26 16 43 H 0.01 0.52 7.20 -2.39 -0.02 0.50 16 44 H 0.01 0.45 7.57 -2.38 -0.02 0.43 16 45 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 46 H 0.07 1.40 7.95 -2.38 -0.02 1.38 16 47 H 0.07 1.14 6.97 -2.39 -0.02 1.12 16 48 H 0.06 0.97 8.08 -2.39 -0.02 0.95 16 49 H 0.05 0.92 7.46 -2.39 -0.02 0.91 16 Total: -1.00 -62.81 352.05 3.57 -59.24 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.27 Total: 17.69 kcal Atomic # 6 Polarization: -47.43 SS G_CDS: 3.73 Total: -43.70 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -2.31 Total: -80.42 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.88 Total: 47.19 kcal Total: -62.81 3.57 -59.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235286552.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.381 kcal (2) G-P(sol) polarization free energy of solvation -62.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds