Wall clock time and date at job start Mon Mar 30 2020 07:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 108.85175 * 2 1 4 4 C 1.50476 * 108.87878 * 118.55370 * 2 1 3 5 5 C 1.54239 * 108.52593 * 214.93146 * 4 2 1 6 6 C 1.45545 * 112.40404 * 280.01355 * 5 4 2 7 7 C 1.54238 * 112.40550 * 61.93661 * 6 5 4 8 8 H 1.09002 * 109.63009 * 39.71996 * 7 6 5 9 9 N 1.46906 * 109.62551 * 160.10749 * 7 6 5 10 10 C 1.46903 * 110.99814 * 274.61063 * 9 7 6 11 11 C 1.53000 * 109.46878 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47140 * 299.99950 * 11 10 9 13 13 C 1.53004 * 109.47191 * 60.00086 * 11 10 9 14 14 C 1.53000 * 109.47093 * 179.97438 * 11 10 9 15 15 C 1.50697 * 109.47103 * 179.97438 * 14 11 10 16 16 H 1.07997 * 119.99935 * 0.02562 * 15 14 11 17 17 C 1.37878 * 119.99824 * 180.02562 * 15 14 11 18 18 N 1.31512 * 119.99774 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 120.00167 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.46981 * 89.99798 * 19 17 15 21 21 H 1.48494 * 109.47063 * 209.99952 * 19 17 15 22 22 H 1.48497 * 109.46788 * 329.99817 * 19 17 15 23 23 C 1.50473 * 108.51893 * 280.01101 * 7 6 5 24 24 C 1.54062 * 112.49935 * 94.15413 * 23 7 6 25 25 H 1.08996 * 109.47205 * 301.44443 * 1 2 3 26 26 H 1.08996 * 109.47028 * 61.44459 * 1 2 3 27 27 H 1.08999 * 109.46812 * 181.44316 * 1 2 3 28 28 H 1.08996 * 109.62779 * 95.21989 * 4 2 1 29 29 H 1.09009 * 109.78493 * 334.73399 * 4 2 1 30 30 H 1.08999 * 108.89697 * 159.25855 * 5 4 2 31 31 H 1.08998 * 108.89585 * 40.76729 * 5 4 2 32 32 H 1.08992 * 108.89278 * 301.17893 * 6 5 4 33 33 H 1.09005 * 108.89494 * 182.69094 * 6 5 4 34 34 H 1.00894 * 111.00010 * 38.56535 * 9 7 6 35 35 H 1.09003 * 109.46720 * 300.00006 * 10 9 7 36 36 H 1.08992 * 109.47005 * 59.99778 * 10 9 7 37 37 H 1.09006 * 109.47305 * 59.99806 * 12 11 10 38 38 H 1.08998 * 109.47353 * 180.02562 * 12 11 10 39 39 H 1.09003 * 109.47333 * 300.00233 * 12 11 10 40 40 H 1.08998 * 109.47100 * 60.00033 * 13 11 10 41 41 H 1.09001 * 109.46556 * 180.02562 * 13 11 10 42 42 H 1.08998 * 109.46768 * 299.99524 * 13 11 10 43 43 H 1.08998 * 109.47448 * 300.00120 * 14 11 10 44 44 H 1.09003 * 109.47010 * 59.99763 * 14 11 10 45 45 H 0.97007 * 119.99635 * 180.02562 * 18 17 15 46 46 H 1.09003 * 108.87840 * 214.93348 * 23 7 6 47 47 H 1.08999 * 108.87527 * 333.37457 * 23 7 6 48 48 H 1.09006 * 108.81431 * 197.42361 * 24 23 7 49 49 H 1.09000 * 108.72977 * 79.08410 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8822 1.0316 0.0000 4 6 2.0169 -0.6806 1.2506 5 6 3.3099 0.0188 1.7174 6 6 4.4788 -0.4194 0.9691 7 6 4.3714 -0.0912 -0.5342 8 1 3.9232 0.8940 -0.6627 9 7 5.7098 -0.1073 -1.1395 10 6 6.3762 1.1920 -0.9783 11 6 7.7638 1.1366 -1.6204 12 6 8.5971 0.0483 -0.9408 13 6 7.6241 0.8164 -3.1100 14 6 8.4576 2.4900 -1.4530 15 6 9.8246 2.4352 -2.0849 16 1 10.1644 1.5262 -2.5588 17 6 10.6414 3.5456 -2.0579 18 7 11.8342 3.4980 -2.6098 19 14 10.0539 5.1177 -1.2375 20 1 10.4435 5.1037 0.1954 21 1 10.6753 6.2880 -1.9080 22 1 8.5760 5.2111 -1.3479 23 6 3.5033 -1.1309 -1.1896 24 6 2.0285 -0.6949 -1.2815 25 1 -0.3633 0.5361 0.8767 26 1 -0.3633 0.4912 -0.9026 27 1 -0.3633 -1.0273 0.0259 28 1 2.2237 -1.7297 1.0397 29 1 1.2585 -0.6063 2.0302 30 1 3.4662 -0.1970 2.7744 31 1 3.1939 1.0953 1.5923 32 1 4.5904 -1.4971 1.0880 33 1 5.3628 0.0721 1.3755 34 1 6.2717 -0.8519 -0.7551 35 1 5.7826 1.9673 -1.4629 36 1 6.4752 1.4203 0.0828 37 1 8.1027 -0.9158 -1.0603 38 1 9.5859 0.0091 -1.3979 39 1 8.6966 0.2763 0.1205 40 1 7.0305 1.5918 -3.5941 41 1 8.6128 0.7766 -3.5672 42 1 7.1298 -0.1476 -3.2296 43 1 7.8638 3.2651 -1.9374 44 1 8.5570 2.7185 -0.3919 45 1 12.4091 4.2792 -2.5905 46 1 3.8783 -1.3205 -2.1953 47 1 3.5628 -2.0542 -0.6133 48 1 1.4126 -1.5750 -1.4664 49 1 1.9185 -0.0070 -2.1198 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235554686.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:52 Heat of formation + Delta-G solvation = -42.447235 kcal Electronic energy + Delta-G solvation = -21641.131873 eV Core-core repulsion = 18794.253732 eV Total energy + Delta-G solvation = -2846.878141 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.63885 -37.42598 -34.84503 -32.89582 -32.27906 -30.75455 -27.73147 -26.98892 -26.33486 -25.53383 -23.93190 -22.77244 -21.72208 -20.81042 -19.16642 -17.72140 -16.75438 -15.77045 -15.33653 -15.12930 -14.98692 -14.13317 -14.09418 -13.80739 -13.49166 -13.16231 -13.13894 -12.81342 -12.68039 -12.54513 -12.20518 -12.11803 -11.82143 -11.52626 -11.15200 -11.05557 -10.97789 -10.85778 -10.81310 -10.70474 -10.50016 -10.45838 -10.31824 -10.29863 -10.22805 -9.78357 -9.64051 -9.23303 -8.86750 -8.47622 -8.05176 -5.97988 -3.93859 3.33364 3.41145 3.45058 4.34257 4.48439 4.50191 4.54143 4.72405 4.94058 4.95186 5.13632 5.24410 5.32920 5.35130 5.39343 5.45921 5.49532 5.59595 5.64945 5.72374 5.75021 5.82238 5.89052 5.92239 5.94794 6.03965 6.06674 6.12466 6.16413 6.21771 6.27122 6.31537 6.35742 6.37008 6.47111 6.63246 6.73958 6.83762 7.12243 7.18161 7.23285 7.36783 7.40952 7.50751 7.72608 7.88216 8.62388 9.08244 9.65374 11.15197 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.029741 B = 0.003861 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.238824 B = 7250.196375 C = 7513.862818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 H 0.067 0.933 4 C -0.111 4.111 5 C -0.113 4.113 6 C -0.149 4.149 7 C 0.090 3.910 8 H 0.075 0.925 9 N -0.680 5.680 10 C 0.068 3.932 11 C -0.049 4.049 12 C -0.130 4.130 13 C -0.117 4.117 14 C -0.004 4.004 15 C -0.506 4.506 16 H 0.078 0.922 17 C 0.064 3.936 18 N -0.906 5.906 19 Si 0.875 3.125 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.267 1.267 23 C -0.110 4.110 24 C -0.108 4.108 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.339 0.661 35 H 0.064 0.936 36 H 0.022 0.978 37 H 0.035 0.965 38 H 0.069 0.931 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.059 0.941 42 H 0.044 0.956 43 H 0.014 0.986 44 H 0.007 0.993 45 H 0.261 0.739 46 H 0.074 0.926 47 H 0.054 0.946 48 H 0.057 0.943 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.883 -9.168 6.819 23.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 H 0.086 0.914 4 C -0.149 4.149 5 C -0.151 4.151 6 C -0.188 4.188 7 C -0.020 4.020 8 H 0.094 0.906 9 N -0.310 5.310 10 C -0.061 4.061 11 C -0.050 4.050 12 C -0.187 4.187 13 C -0.174 4.174 14 C -0.042 4.042 15 C -0.544 4.544 16 H 0.096 0.904 17 C -0.136 4.136 18 N -0.546 5.546 19 Si 0.703 3.297 20 H -0.205 1.205 21 H -0.216 1.216 22 H -0.191 1.191 23 C -0.148 4.148 24 C -0.146 4.146 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.158 0.842 35 H 0.082 0.918 36 H 0.040 0.960 37 H 0.054 0.946 38 H 0.088 0.912 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.032 0.968 44 H 0.025 0.975 45 H 0.071 0.929 46 H 0.093 0.907 47 H 0.072 0.928 48 H 0.076 0.924 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.945 -8.916 6.136 23.576 hybrid contribution 0.089 1.019 1.498 1.813 sum -20.857 -7.897 7.633 23.572 Atomic orbital electron populations 1.21948 0.95667 1.01496 1.01443 1.20977 0.95159 1.00176 0.94901 0.91444 1.21418 0.96749 0.99997 0.96731 1.20405 0.94951 1.00434 0.99346 1.21238 0.98563 1.01530 0.97439 1.21309 0.90731 0.99509 0.90450 0.90645 1.60774 1.03185 1.06275 1.60814 1.22139 0.95816 0.90324 0.97772 1.20420 0.91623 0.97381 0.95540 1.21776 1.01079 0.96385 0.99492 1.21603 1.01274 0.99543 0.94994 1.19625 0.96491 0.92059 0.96023 1.21149 0.97812 0.99703 1.35736 0.90422 1.25018 0.94795 0.98561 0.95239 1.69913 1.08933 1.30126 1.45631 0.86851 0.79492 0.83633 0.79715 1.20535 1.21555 1.19137 1.21372 0.93563 0.97928 1.01915 1.21932 0.95778 1.00028 0.96892 0.92912 0.92908 0.92877 0.91700 0.92135 0.92666 0.92301 0.92196 0.92305 0.84210 0.91797 0.95998 0.94568 0.91231 0.94247 0.94284 0.92222 0.93660 0.96762 0.97480 0.92920 0.90736 0.92768 0.92395 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.79 37.16 0.33 -0.78 16 2 C -0.09 -0.81 2.21 -91.33 -0.20 -1.01 16 3 H 0.07 0.64 6.63 -51.93 -0.34 0.30 16 4 C -0.11 -0.94 5.13 -27.34 -0.14 -1.08 16 5 C -0.11 -1.07 5.26 -29.60 -0.16 -1.22 16 6 C -0.15 -1.58 4.62 -29.60 -0.14 -1.72 16 7 C 0.09 1.05 2.13 -68.32 -0.15 0.91 16 8 H 0.08 0.95 6.64 -51.93 -0.34 0.61 16 9 N -0.68 -9.43 5.34 -107.37 -0.57 -10.01 16 10 C 0.07 1.13 4.42 -3.82 -0.02 1.11 16 11 C -0.05 -0.96 0.60 -154.51 -0.09 -1.05 16 12 C -0.13 -2.40 7.89 37.16 0.29 -2.11 16 13 C -0.12 -2.27 8.06 37.16 0.30 -1.97 16 14 C 0.00 -0.10 3.11 -27.88 -0.09 -0.19 16 15 C -0.51 -14.07 8.20 -34.44 -0.28 -14.36 16 16 H 0.08 2.30 5.92 -52.49 -0.31 1.99 16 17 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 18 N -0.91 -27.97 13.96 55.43 0.77 -27.20 16 19 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 23 C -0.11 -1.14 5.05 -27.44 -0.14 -1.27 16 24 C -0.11 -0.99 5.23 -25.62 -0.13 -1.12 16 25 H 0.05 0.37 8.08 -51.93 -0.42 -0.05 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.55 6.98 -51.93 -0.36 0.19 16 29 H 0.06 0.47 7.68 -51.92 -0.40 0.07 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.58 7.47 -51.93 -0.39 0.20 16 32 H 0.06 0.61 7.47 -51.93 -0.39 0.22 16 33 H 0.06 0.70 7.26 -51.93 -0.38 0.33 16 34 H 0.34 4.59 6.53 -39.29 -0.26 4.33 16 35 H 0.06 1.09 8.06 -51.93 -0.42 0.67 16 36 H 0.02 0.36 7.36 -51.93 -0.38 -0.02 16 37 H 0.04 0.57 6.57 -51.93 -0.34 0.23 16 38 H 0.07 1.46 6.62 -51.93 -0.34 1.11 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 1.28 6.62 -51.93 -0.34 0.94 16 42 H 0.04 0.79 7.60 -51.93 -0.39 0.39 16 43 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 44 H 0.01 0.17 7.57 -51.93 -0.39 -0.23 16 45 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.07 0.86 7.95 -51.93 -0.41 0.45 16 47 H 0.05 0.53 6.63 -51.93 -0.34 0.19 16 48 H 0.06 0.48 7.98 -51.93 -0.41 0.07 16 49 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 351.65 15.07 5.30 5.30 Total: -1.00 -28.85 351.65 -9.33 -38.18 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -9.46 Total: 0.52 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: -0.71 Total: -24.09 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.20 Total: -37.20 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.85 -9.33 -38.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235554686.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.263 kcal (2) G-P(sol) polarization free energy of solvation -28.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds