Wall clock time and date at job start Mon Mar 30 2020 07:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 108.85175 * 2 1 4 4 C 1.50476 * 108.87878 * 118.55370 * 2 1 3 5 5 C 1.54239 * 108.52593 * 214.93146 * 4 2 1 6 6 C 1.45545 * 112.40404 * 280.01355 * 5 4 2 7 7 C 1.54238 * 112.40550 * 61.93661 * 6 5 4 8 8 H 1.09002 * 109.63009 * 39.71996 * 7 6 5 9 9 N 1.46906 * 109.62551 * 160.10749 * 7 6 5 10 10 C 1.46903 * 110.99814 * 274.61063 * 9 7 6 11 11 C 1.53000 * 109.46878 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47140 * 299.99950 * 11 10 9 13 13 C 1.53004 * 109.47191 * 60.00086 * 11 10 9 14 14 C 1.53000 * 109.47093 * 179.97438 * 11 10 9 15 15 C 1.50697 * 109.47103 * 179.97438 * 14 11 10 16 16 H 1.07997 * 119.99935 * 0.02562 * 15 14 11 17 17 C 1.37878 * 119.99824 * 180.02562 * 15 14 11 18 18 N 1.31512 * 119.99774 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 120.00167 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.46981 * 89.99798 * 19 17 15 21 21 H 1.48494 * 109.47063 * 209.99952 * 19 17 15 22 22 H 1.48497 * 109.46788 * 329.99817 * 19 17 15 23 23 C 1.50473 * 108.51893 * 280.01101 * 7 6 5 24 24 C 1.54062 * 112.49935 * 94.15413 * 23 7 6 25 25 H 1.08996 * 109.47205 * 301.44443 * 1 2 3 26 26 H 1.08996 * 109.47028 * 61.44459 * 1 2 3 27 27 H 1.08999 * 109.46812 * 181.44316 * 1 2 3 28 28 H 1.08996 * 109.62779 * 95.21989 * 4 2 1 29 29 H 1.09009 * 109.78493 * 334.73399 * 4 2 1 30 30 H 1.08999 * 108.89697 * 159.25855 * 5 4 2 31 31 H 1.08998 * 108.89585 * 40.76729 * 5 4 2 32 32 H 1.08992 * 108.89278 * 301.17893 * 6 5 4 33 33 H 1.09005 * 108.89494 * 182.69094 * 6 5 4 34 34 H 1.00894 * 111.00010 * 38.56535 * 9 7 6 35 35 H 1.09003 * 109.46720 * 300.00006 * 10 9 7 36 36 H 1.08992 * 109.47005 * 59.99778 * 10 9 7 37 37 H 1.09006 * 109.47305 * 59.99806 * 12 11 10 38 38 H 1.08998 * 109.47353 * 180.02562 * 12 11 10 39 39 H 1.09003 * 109.47333 * 300.00233 * 12 11 10 40 40 H 1.08998 * 109.47100 * 60.00033 * 13 11 10 41 41 H 1.09001 * 109.46556 * 180.02562 * 13 11 10 42 42 H 1.08998 * 109.46768 * 299.99524 * 13 11 10 43 43 H 1.08998 * 109.47448 * 300.00120 * 14 11 10 44 44 H 1.09003 * 109.47010 * 59.99763 * 14 11 10 45 45 H 0.97007 * 119.99635 * 180.02562 * 18 17 15 46 46 H 1.09003 * 108.87840 * 214.93348 * 23 7 6 47 47 H 1.08999 * 108.87527 * 333.37457 * 23 7 6 48 48 H 1.09006 * 108.81431 * 197.42361 * 24 23 7 49 49 H 1.09000 * 108.72977 * 79.08410 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8822 1.0316 0.0000 4 6 2.0169 -0.6806 1.2506 5 6 3.3099 0.0188 1.7174 6 6 4.4788 -0.4194 0.9691 7 6 4.3714 -0.0912 -0.5342 8 1 3.9232 0.8940 -0.6627 9 7 5.7098 -0.1073 -1.1395 10 6 6.3762 1.1920 -0.9783 11 6 7.7638 1.1366 -1.6204 12 6 8.5971 0.0483 -0.9408 13 6 7.6241 0.8164 -3.1100 14 6 8.4576 2.4900 -1.4530 15 6 9.8246 2.4352 -2.0849 16 1 10.1644 1.5262 -2.5588 17 6 10.6414 3.5456 -2.0579 18 7 11.8342 3.4980 -2.6098 19 14 10.0539 5.1177 -1.2375 20 1 10.4435 5.1037 0.1954 21 1 10.6753 6.2880 -1.9080 22 1 8.5760 5.2111 -1.3479 23 6 3.5033 -1.1309 -1.1896 24 6 2.0285 -0.6949 -1.2815 25 1 -0.3633 0.5361 0.8767 26 1 -0.3633 0.4912 -0.9026 27 1 -0.3633 -1.0273 0.0259 28 1 2.2237 -1.7297 1.0397 29 1 1.2585 -0.6063 2.0302 30 1 3.4662 -0.1970 2.7744 31 1 3.1939 1.0953 1.5923 32 1 4.5904 -1.4971 1.0880 33 1 5.3628 0.0721 1.3755 34 1 6.2717 -0.8519 -0.7551 35 1 5.7826 1.9673 -1.4629 36 1 6.4752 1.4203 0.0828 37 1 8.1027 -0.9158 -1.0603 38 1 9.5859 0.0091 -1.3979 39 1 8.6966 0.2763 0.1205 40 1 7.0305 1.5918 -3.5941 41 1 8.6128 0.7766 -3.5672 42 1 7.1298 -0.1476 -3.2296 43 1 7.8638 3.2651 -1.9374 44 1 8.5570 2.7185 -0.3919 45 1 12.4091 4.2792 -2.5905 46 1 3.8783 -1.3205 -2.1953 47 1 3.5628 -2.0542 -0.6133 48 1 1.4126 -1.5750 -1.4664 49 1 1.9185 -0.0070 -2.1198 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235554686.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:51 Heat of formation + Delta-G solvation = -57.648719 kcal Electronic energy + Delta-G solvation = -21641.791059 eV Core-core repulsion = 18794.253732 eV Total energy + Delta-G solvation = -2847.537327 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.52418 -38.82654 -35.97722 -34.42613 -33.57571 -31.86919 -29.55819 -27.94744 -27.83688 -26.70696 -25.13554 -23.71720 -23.27033 -21.62971 -20.01817 -19.26196 -18.86895 -16.76907 -16.39194 -16.20472 -15.92455 -15.84965 -15.38325 -15.16621 -14.70673 -14.34967 -14.24619 -13.95079 -13.88445 -13.64980 -13.57099 -13.33057 -12.88997 -12.82020 -12.59755 -12.56292 -12.25552 -12.21101 -12.08394 -11.84915 -11.75325 -11.65954 -11.52482 -11.33956 -11.19951 -11.09071 -11.06570 -10.92043 -10.73729 -10.70411 -9.17534 -8.22244 -6.22387 1.34456 1.36671 1.47775 2.38903 3.12711 3.30329 3.68664 3.76817 4.03979 4.11761 4.16686 4.21256 4.24975 4.33562 4.38688 4.49286 4.56885 4.57973 4.76170 4.77888 4.81125 4.87084 4.91384 4.93530 5.00308 5.05533 5.10971 5.13419 5.18034 5.19132 5.21586 5.29629 5.33345 5.35907 5.42660 5.43988 5.46132 5.49048 5.53589 5.55723 5.63398 5.65580 5.76693 5.82447 6.25168 6.42636 6.61693 6.84934 7.40093 8.94047 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.029741 B = 0.003861 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.238824 B = 7250.196375 C = 7513.862818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 H 0.056 0.944 4 C -0.107 4.107 5 C -0.113 4.113 6 C -0.142 4.142 7 C 0.092 3.908 8 H 0.066 0.934 9 N -0.681 5.681 10 C 0.083 3.917 11 C -0.049 4.049 12 C -0.123 4.123 13 C -0.108 4.108 14 C -0.002 4.002 15 C -0.503 4.503 16 H 0.045 0.955 17 C 0.001 3.999 18 N -0.955 5.955 19 Si 0.940 3.060 20 H -0.270 1.270 21 H -0.287 1.287 22 H -0.251 1.251 23 C -0.105 4.105 24 C -0.105 4.105 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.342 0.658 35 H 0.059 0.941 36 H 0.024 0.976 37 H 0.066 0.934 38 H 0.035 0.965 39 H 0.043 0.957 40 H 0.035 0.965 41 H 0.027 0.973 42 H 0.067 0.933 43 H 0.011 0.989 44 H 0.010 0.990 45 H 0.262 0.738 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.068 0.932 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.536 -9.605 8.268 26.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.074 0.926 4 C -0.144 4.144 5 C -0.151 4.151 6 C -0.181 4.181 7 C -0.017 4.017 8 H 0.084 0.916 9 N -0.312 5.312 10 C -0.047 4.047 11 C -0.050 4.050 12 C -0.180 4.180 13 C -0.165 4.165 14 C -0.040 4.040 15 C -0.541 4.541 16 H 0.063 0.937 17 C -0.195 4.195 18 N -0.597 5.597 19 Si 0.765 3.235 20 H -0.195 1.195 21 H -0.214 1.214 22 H -0.175 1.175 23 C -0.143 4.143 24 C -0.143 4.143 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.162 0.838 35 H 0.078 0.922 36 H 0.042 0.958 37 H 0.085 0.915 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.055 0.945 41 H 0.046 0.954 42 H 0.085 0.915 43 H 0.029 0.971 44 H 0.028 0.972 45 H 0.071 0.929 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.087 0.913 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -23.623 -9.368 7.592 26.523 hybrid contribution 0.925 1.068 1.001 1.732 sum -22.698 -8.301 8.593 25.650 Atomic orbital electron populations 1.21924 0.94694 1.02039 1.01678 1.20954 0.95988 0.99422 0.94749 0.92597 1.21389 0.96374 0.99860 0.96809 1.20393 0.95016 1.00111 0.99611 1.21163 0.98566 1.01870 0.96464 1.21329 0.89458 0.99604 0.91349 0.91575 1.60731 1.03953 1.04985 1.61489 1.21838 0.93781 0.91681 0.97358 1.20363 0.93346 0.95298 0.95963 1.21681 0.99416 0.97742 0.99173 1.21499 0.99517 1.00667 0.94809 1.19590 0.94419 0.94617 0.95403 1.21433 0.99621 0.98363 1.34723 0.93697 1.25917 0.94906 1.02403 0.96233 1.70066 1.10509 1.31294 1.47787 0.85807 0.79759 0.79105 0.78857 1.19536 1.21356 1.17470 1.21308 0.93997 0.97797 1.01154 1.21907 0.95051 1.00376 0.97009 0.92457 0.92960 0.92169 0.91403 0.91135 0.91976 0.93003 0.91400 0.93619 0.83785 0.92222 0.95751 0.91508 0.94538 0.93819 0.94540 0.95370 0.91458 0.97069 0.97186 0.92882 0.91873 0.91869 0.91305 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.79 71.98 0.63 -1.20 16 2 C -0.09 -1.38 2.21 -11.25 -0.02 -1.41 16 3 H 0.06 0.97 6.63 -2.39 -0.02 0.96 16 4 C -0.11 -1.51 5.13 30.20 0.15 -1.35 16 5 C -0.11 -1.87 5.26 28.74 0.15 -1.72 16 6 C -0.14 -2.68 4.62 28.74 0.13 -2.55 16 7 C 0.09 1.96 2.13 44.52 0.09 2.06 16 8 H 0.07 1.56 6.64 -2.39 -0.02 1.54 16 9 N -0.68 -17.45 5.34 -493.62 -2.63 -20.09 16 10 C 0.08 2.58 4.42 86.30 0.38 2.97 16 11 C -0.05 -1.88 0.60 -52.18 -0.03 -1.91 16 12 C -0.12 -4.46 7.89 71.98 0.57 -3.89 16 13 C -0.11 -4.15 8.06 71.98 0.58 -3.57 16 14 C 0.00 -0.11 3.11 29.85 0.09 -0.02 16 15 C -0.50 -28.66 8.20 25.60 0.21 -28.45 16 16 H 0.04 2.80 5.92 -2.91 -0.02 2.78 16 17 C 0.00 0.06 5.47 84.66 0.46 0.53 16 18 N -0.95 -60.60 13.96 21.45 0.30 -60.30 16 19 Si 0.94 45.27 27.47 68.60 1.88 47.15 16 20 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 22 H -0.25 -11.34 6.54 99.48 0.65 -10.69 16 23 C -0.10 -1.93 5.05 30.14 0.15 -1.77 16 24 C -0.11 -1.69 5.23 31.31 0.16 -1.52 16 25 H 0.06 0.67 8.08 -2.39 -0.02 0.65 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.94 6.98 -2.39 -0.02 0.92 16 29 H 0.07 0.87 7.68 -2.38 -0.02 0.86 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 31 H 0.05 0.94 7.47 -2.39 -0.02 0.92 16 32 H 0.07 1.19 7.47 -2.39 -0.02 1.17 16 33 H 0.05 0.99 7.26 -2.38 -0.02 0.98 16 34 H 0.34 8.38 6.53 -89.70 -0.59 7.80 16 35 H 0.06 1.93 8.06 -2.39 -0.02 1.91 16 36 H 0.02 0.75 7.36 -2.39 -0.02 0.74 16 37 H 0.07 1.99 6.57 -2.38 -0.02 1.97 16 38 H 0.04 1.55 6.62 -2.39 -0.02 1.53 16 39 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.03 1.23 6.62 -2.39 -0.02 1.22 16 42 H 0.07 2.27 7.60 -2.39 -0.02 2.25 16 43 H 0.01 0.53 7.20 -2.39 -0.02 0.51 16 44 H 0.01 0.46 7.57 -2.39 -0.02 0.44 16 45 H 0.26 15.65 8.31 -92.70 -0.77 14.88 16 46 H 0.06 1.33 7.95 -2.39 -0.02 1.31 16 47 H 0.06 1.06 6.63 -2.39 -0.02 1.04 16 48 H 0.07 0.97 7.98 -2.38 -0.02 0.95 16 49 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -62.76 351.65 3.51 -59.24 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.24 Total: 17.82 kcal Atomic # 6 Polarization: -47.54 SS G_CDS: 3.72 Total: -43.82 kcal Atomic # 7 Polarization: -78.05 SS G_CDS: -2.34 Total: -80.39 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.88 Total: 47.15 kcal Total: -62.76 3.51 -59.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235554686.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.595 kcal (2) G-P(sol) polarization free energy of solvation -62.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds