Wall clock time and date at job start Mon Mar 30 2020 07:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.62377 * 2 1 4 4 C 1.50469 * 109.63202 * 120.38841 * 2 1 3 5 5 C 1.54070 * 112.49861 * 213.86397 * 4 2 1 6 6 C 1.54071 * 112.81527 * 318.28163 * 5 4 2 7 7 C 1.50469 * 112.49780 * 318.28376 * 6 5 4 8 8 H 1.09000 * 109.62577 * 334.24174 * 7 6 5 9 9 N 1.46905 * 109.62725 * 213.85924 * 7 6 5 10 10 C 1.46901 * 110.99870 * 85.00117 * 9 7 6 11 11 C 1.53004 * 109.46916 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46923 * 299.99733 * 11 10 9 13 13 C 1.52999 * 109.46998 * 59.99872 * 11 10 9 14 14 C 1.52996 * 109.46700 * 179.97438 * 11 10 9 15 15 C 1.50701 * 109.46820 * 179.97438 * 14 11 10 16 16 H 1.08000 * 120.00070 * 0.02562 * 15 14 11 17 17 C 1.37878 * 120.00019 * 179.97438 * 15 14 11 18 18 N 1.31515 * 120.00228 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 120.00068 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46424 * 90.00488 * 19 17 15 21 21 H 1.48498 * 109.46986 * 210.00365 * 19 17 15 22 22 H 1.48503 * 109.47043 * 330.00844 * 19 17 15 23 23 C 1.54235 * 108.52303 * 94.14930 * 7 6 5 24 24 C 1.45549 * 112.40738 * 280.01438 * 23 7 6 25 25 H 1.09005 * 109.47319 * 299.60435 * 1 2 3 26 26 H 1.08997 * 109.47435 * 59.61296 * 1 2 3 27 27 H 1.09010 * 109.46491 * 179.61268 * 1 2 3 28 28 H 1.08999 * 108.87691 * 93.08489 * 4 2 1 29 29 H 1.08998 * 108.87787 * 334.63850 * 4 2 1 30 30 H 1.08995 * 108.81518 * 197.42711 * 5 4 2 31 31 H 1.09001 * 108.72958 * 79.08302 * 5 4 2 32 32 H 1.08995 * 108.87568 * 197.50472 * 6 5 4 33 33 H 1.09001 * 108.79441 * 79.00771 * 6 5 4 34 34 H 1.00901 * 110.99869 * 321.04829 * 9 7 6 35 35 H 1.09004 * 109.47031 * 299.99620 * 10 9 7 36 36 H 1.08995 * 109.47111 * 59.99900 * 10 9 7 37 37 H 1.09002 * 109.47301 * 60.00027 * 12 11 10 38 38 H 1.09001 * 109.47017 * 180.02562 * 12 11 10 39 39 H 1.09005 * 109.47249 * 300.00302 * 12 11 10 40 40 H 1.09001 * 109.46999 * 60.00126 * 13 11 10 41 41 H 1.09001 * 109.46478 * 179.97438 * 13 11 10 42 42 H 1.08993 * 109.47197 * 299.99817 * 13 11 10 43 43 H 1.08993 * 109.47740 * 299.99810 * 14 11 10 44 44 H 1.09005 * 109.47573 * 59.99976 * 14 11 10 45 45 H 0.97002 * 120.00555 * 179.97438 * 18 17 15 46 46 H 1.08998 * 108.89926 * 40.77142 * 23 7 6 47 47 H 1.09003 * 108.89874 * 159.26145 * 23 7 6 48 48 H 1.09000 * 108.89241 * 301.18390 * 24 23 7 49 49 H 1.09002 * 108.89559 * 182.69215 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0355 -0.7169 1.2225 5 6 3.3469 -0.1127 1.7602 6 6 4.3396 0.2530 0.6401 7 6 4.4029 -0.7949 -0.4379 8 1 4.1162 -1.7623 -0.0254 9 7 5.7693 -0.8716 -0.9719 10 6 6.6062 -1.7574 -0.1514 11 6 8.0186 -1.8111 -0.7372 12 6 7.9571 -2.3489 -2.1682 13 6 8.6208 -0.4047 -0.7463 14 6 8.8903 -2.7331 0.1177 15 6 10.2814 -2.7866 -0.4595 16 1 10.5199 -2.2194 -1.3471 17 6 11.2499 -3.5589 0.1460 18 7 10.9596 -4.2493 1.2271 19 14 12.9744 -3.6247 -0.5691 20 1 13.8029 -2.5520 0.0376 21 1 13.5826 -4.9468 -0.2737 22 1 12.9083 -3.4274 -2.0395 23 6 3.4277 -0.3980 -1.5649 24 6 2.0481 -0.7391 -1.2506 25 1 -0.3634 0.5077 0.8935 26 1 -0.3634 0.5198 -0.8865 27 1 -0.3633 -1.0278 -0.0069 28 1 2.2063 -1.7639 0.9720 29 1 1.2763 -0.6623 2.0026 30 1 3.8192 -0.8345 2.4266 31 1 3.1106 0.7871 2.3281 32 1 5.3322 0.3730 1.0740 33 1 4.0332 1.1993 0.1945 34 1 6.1802 0.0469 -1.0469 35 1 6.6504 -1.3739 0.8680 36 1 6.1769 -2.7592 -0.1446 37 1 7.3361 -1.6918 -2.7770 38 1 8.9634 -2.3877 -2.5853 39 1 7.5280 -3.3510 -2.1617 40 1 8.6646 -0.0216 0.2733 41 1 9.6272 -0.4432 -1.1631 42 1 7.9999 0.2525 -1.3550 43 1 8.9341 -2.3497 1.1370 44 1 8.4615 -3.7352 0.1247 45 1 11.6408 -4.7929 1.6530 46 1 3.4968 0.6774 -1.7291 47 1 3.7186 -0.9123 -2.4809 48 1 1.9805 -1.8134 -1.0791 49 1 1.4176 -0.4790 -2.1009 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235580430.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:54 Heat of formation + Delta-G solvation = -45.649473 kcal Electronic energy + Delta-G solvation = -21582.486890 eV Core-core repulsion = 18735.469890 eV Total energy + Delta-G solvation = -2847.017000 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.59321 -37.32615 -34.74902 -32.58397 -32.39141 -30.79245 -27.40481 -26.75839 -26.27930 -25.34836 -23.73157 -23.07945 -21.99844 -20.50983 -19.31463 -17.76003 -16.19883 -15.69008 -15.24304 -14.83902 -14.64282 -14.47514 -14.37787 -13.68097 -13.45504 -13.24870 -13.04507 -12.70610 -12.51244 -12.43207 -11.99296 -11.87975 -11.79244 -11.56008 -11.09358 -10.94483 -10.87659 -10.78809 -10.73511 -10.64865 -10.48257 -10.46245 -10.33113 -10.20182 -10.13451 -10.01704 -9.64000 -8.96786 -8.78492 -8.29190 -7.96639 -5.93723 -3.93681 3.34785 3.41352 3.44477 4.36520 4.48972 4.51897 4.71265 4.75632 4.99114 5.05944 5.14534 5.22848 5.37524 5.42033 5.44720 5.47755 5.57649 5.65473 5.74246 5.79726 5.83095 5.85018 5.95149 5.99148 6.03342 6.10304 6.16844 6.17499 6.19642 6.30179 6.33988 6.39338 6.41563 6.41910 6.56840 6.71139 6.84408 6.87105 7.25216 7.30255 7.31420 7.51462 7.73059 7.80074 7.90080 8.06923 8.51639 9.11835 9.68969 11.17974 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.040723 B = 0.003509 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.411392 B = 7978.402377 C = 8225.576151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 H 0.071 0.929 4 C -0.115 4.115 5 C -0.113 4.113 6 C -0.147 4.147 7 C 0.090 3.910 8 H 0.076 0.924 9 N -0.683 5.683 10 C 0.072 3.928 11 C -0.059 4.059 12 C -0.115 4.115 13 C -0.128 4.128 14 C 0.034 3.966 15 C -0.506 4.506 16 H 0.059 0.941 17 C 0.054 3.946 18 N -0.898 5.898 19 Si 0.887 3.113 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.274 1.274 23 C -0.108 4.108 24 C -0.109 4.109 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.337 0.663 35 H 0.022 0.978 36 H 0.064 0.936 37 H 0.042 0.958 38 H 0.053 0.947 39 H 0.038 0.962 40 H 0.039 0.961 41 H 0.063 0.937 42 H 0.033 0.967 43 H 0.012 0.988 44 H 0.014 0.986 45 H 0.258 0.742 46 H 0.053 0.947 47 H 0.070 0.930 48 H 0.059 0.941 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.868 9.346 -2.233 21.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.089 0.911 4 C -0.152 4.152 5 C -0.151 4.151 6 C -0.186 4.186 7 C -0.020 4.020 8 H 0.094 0.906 9 N -0.313 5.313 10 C -0.057 4.057 11 C -0.059 4.059 12 C -0.173 4.173 13 C -0.186 4.186 14 C -0.003 4.003 15 C -0.544 4.544 16 H 0.077 0.923 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.715 3.285 20 H -0.209 1.209 21 H -0.214 1.214 22 H -0.199 1.199 23 C -0.146 4.146 24 C -0.147 4.147 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.156 0.844 35 H 0.040 0.960 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.082 0.918 42 H 0.052 0.948 43 H 0.030 0.970 44 H 0.033 0.967 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.089 0.911 48 H 0.078 0.922 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.932 8.723 -2.577 21.004 hybrid contribution 1.194 0.427 0.673 1.435 sum -17.738 9.150 -1.904 20.050 Atomic orbital electron populations 1.21894 0.95502 1.01600 1.01308 1.20926 0.94943 0.99985 0.95097 0.91108 1.21423 0.96545 1.00065 0.97171 1.21838 0.95154 1.00505 0.97635 1.22156 0.99313 0.99984 0.97176 1.21280 0.89840 0.98276 0.92648 0.90576 1.60681 1.01597 1.16254 1.52796 1.22100 0.93900 0.96075 0.93632 1.20628 0.92234 0.96271 0.96781 1.21590 1.00685 0.99256 0.95720 1.21763 1.01069 0.95874 0.99858 1.19116 0.93562 0.93594 0.94076 1.21250 0.95126 1.26822 1.11219 0.92307 1.25018 0.98659 0.95843 0.95102 1.69968 1.33755 1.30182 1.19906 0.86671 0.85097 0.77209 0.79492 1.20852 1.21383 1.19906 1.20443 0.93860 1.01053 0.99223 1.20519 0.96546 1.00360 0.97301 0.92954 0.92895 0.92796 0.92042 0.92460 0.92285 0.92657 0.92165 0.92208 0.84403 0.95995 0.91788 0.93882 0.92792 0.94251 0.94207 0.91797 0.94807 0.97000 0.96737 0.93197 0.92812 0.91125 0.92212 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.87 37.16 0.33 -0.77 16 2 C -0.09 -0.79 2.39 -91.24 -0.22 -1.01 16 3 H 0.07 0.65 6.99 -51.93 -0.36 0.28 16 4 C -0.11 -1.06 4.89 -27.44 -0.13 -1.20 16 5 C -0.11 -1.16 5.85 -25.61 -0.15 -1.31 16 6 C -0.15 -1.66 4.72 -27.44 -0.13 -1.79 16 7 C 0.09 1.11 2.14 -68.33 -0.15 0.96 16 8 H 0.08 1.02 6.67 -51.93 -0.35 0.67 16 9 N -0.68 -9.95 5.38 -107.38 -0.58 -10.52 16 10 C 0.07 1.25 4.38 -3.82 -0.02 1.24 16 11 C -0.06 -1.18 0.60 -154.51 -0.09 -1.28 16 12 C -0.12 -2.27 8.06 37.16 0.30 -1.97 16 13 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 14 C 0.03 0.87 4.04 -27.88 -0.11 0.75 16 15 C -0.51 -13.97 7.65 -34.44 -0.26 -14.23 16 16 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 17 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 18 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 19 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 23 C -0.11 -1.16 4.90 -29.60 -0.15 -1.31 16 24 C -0.11 -1.02 4.69 -29.60 -0.14 -1.16 16 25 H 0.05 0.37 8.09 -51.93 -0.42 -0.05 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.40 8.14 -51.92 -0.42 -0.03 16 28 H 0.06 0.61 6.64 -51.93 -0.34 0.27 16 29 H 0.06 0.49 7.67 -51.93 -0.40 0.09 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.77 7.17 -51.93 -0.37 0.39 16 33 H 0.06 0.63 6.63 -51.93 -0.34 0.29 16 34 H 0.34 4.77 6.49 -39.29 -0.25 4.52 16 35 H 0.02 0.39 7.47 -51.93 -0.39 0.00 16 36 H 0.06 1.17 8.06 -51.93 -0.42 0.76 16 37 H 0.04 0.76 7.60 -51.93 -0.39 0.37 16 38 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 42 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 43 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 46 H 0.05 0.56 7.47 -51.93 -0.39 0.17 16 47 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 48 H 0.06 0.59 7.47 -51.93 -0.39 0.20 16 49 H 0.06 0.50 7.97 -51.93 -0.41 0.08 16 LS Contribution 355.51 15.07 5.36 5.36 Total: -1.00 -28.52 355.51 -9.73 -38.24 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -9.50 Total: 0.27 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: -0.72 Total: -23.74 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.16 Total: -36.88 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.52 -9.73 -38.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235580430.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.405 kcal (2) G-P(sol) polarization free energy of solvation -28.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds