Wall clock time and date at job start Mon Mar 30 2020 07:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.62377 * 2 1 4 4 C 1.50469 * 109.63202 * 120.38841 * 2 1 3 5 5 C 1.54070 * 112.49861 * 213.86397 * 4 2 1 6 6 C 1.54071 * 112.81527 * 318.28163 * 5 4 2 7 7 C 1.50469 * 112.49780 * 318.28376 * 6 5 4 8 8 H 1.09000 * 109.62577 * 334.24174 * 7 6 5 9 9 N 1.46905 * 109.62725 * 213.85924 * 7 6 5 10 10 C 1.46901 * 110.99870 * 85.00117 * 9 7 6 11 11 C 1.53004 * 109.46916 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46923 * 299.99733 * 11 10 9 13 13 C 1.52999 * 109.46998 * 59.99872 * 11 10 9 14 14 C 1.52996 * 109.46700 * 179.97438 * 11 10 9 15 15 C 1.50701 * 109.46820 * 179.97438 * 14 11 10 16 16 H 1.08000 * 120.00070 * 0.02562 * 15 14 11 17 17 C 1.37878 * 120.00019 * 179.97438 * 15 14 11 18 18 N 1.31515 * 120.00228 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 120.00068 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46424 * 90.00488 * 19 17 15 21 21 H 1.48498 * 109.46986 * 210.00365 * 19 17 15 22 22 H 1.48503 * 109.47043 * 330.00844 * 19 17 15 23 23 C 1.54235 * 108.52303 * 94.14930 * 7 6 5 24 24 C 1.45549 * 112.40738 * 280.01438 * 23 7 6 25 25 H 1.09005 * 109.47319 * 299.60435 * 1 2 3 26 26 H 1.08997 * 109.47435 * 59.61296 * 1 2 3 27 27 H 1.09010 * 109.46491 * 179.61268 * 1 2 3 28 28 H 1.08999 * 108.87691 * 93.08489 * 4 2 1 29 29 H 1.08998 * 108.87787 * 334.63850 * 4 2 1 30 30 H 1.08995 * 108.81518 * 197.42711 * 5 4 2 31 31 H 1.09001 * 108.72958 * 79.08302 * 5 4 2 32 32 H 1.08995 * 108.87568 * 197.50472 * 6 5 4 33 33 H 1.09001 * 108.79441 * 79.00771 * 6 5 4 34 34 H 1.00901 * 110.99869 * 321.04829 * 9 7 6 35 35 H 1.09004 * 109.47031 * 299.99620 * 10 9 7 36 36 H 1.08995 * 109.47111 * 59.99900 * 10 9 7 37 37 H 1.09002 * 109.47301 * 60.00027 * 12 11 10 38 38 H 1.09001 * 109.47017 * 180.02562 * 12 11 10 39 39 H 1.09005 * 109.47249 * 300.00302 * 12 11 10 40 40 H 1.09001 * 109.46999 * 60.00126 * 13 11 10 41 41 H 1.09001 * 109.46478 * 179.97438 * 13 11 10 42 42 H 1.08993 * 109.47197 * 299.99817 * 13 11 10 43 43 H 1.08993 * 109.47740 * 299.99810 * 14 11 10 44 44 H 1.09005 * 109.47573 * 59.99976 * 14 11 10 45 45 H 0.97002 * 120.00555 * 179.97438 * 18 17 15 46 46 H 1.08998 * 108.89926 * 40.77142 * 23 7 6 47 47 H 1.09003 * 108.89874 * 159.26145 * 23 7 6 48 48 H 1.09000 * 108.89241 * 301.18390 * 24 23 7 49 49 H 1.09002 * 108.89559 * 182.69215 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0355 -0.7169 1.2225 5 6 3.3469 -0.1127 1.7602 6 6 4.3396 0.2530 0.6401 7 6 4.4029 -0.7949 -0.4379 8 1 4.1162 -1.7623 -0.0254 9 7 5.7693 -0.8716 -0.9719 10 6 6.6062 -1.7574 -0.1514 11 6 8.0186 -1.8111 -0.7372 12 6 7.9571 -2.3489 -2.1682 13 6 8.6208 -0.4047 -0.7463 14 6 8.8903 -2.7331 0.1177 15 6 10.2814 -2.7866 -0.4595 16 1 10.5199 -2.2194 -1.3471 17 6 11.2499 -3.5589 0.1460 18 7 10.9596 -4.2493 1.2271 19 14 12.9744 -3.6247 -0.5691 20 1 13.8029 -2.5520 0.0376 21 1 13.5826 -4.9468 -0.2737 22 1 12.9083 -3.4274 -2.0395 23 6 3.4277 -0.3980 -1.5649 24 6 2.0481 -0.7391 -1.2506 25 1 -0.3634 0.5077 0.8935 26 1 -0.3634 0.5198 -0.8865 27 1 -0.3633 -1.0278 -0.0069 28 1 2.2063 -1.7639 0.9720 29 1 1.2763 -0.6623 2.0026 30 1 3.8192 -0.8345 2.4266 31 1 3.1106 0.7871 2.3281 32 1 5.3322 0.3730 1.0740 33 1 4.0332 1.1993 0.1945 34 1 6.1802 0.0469 -1.0469 35 1 6.6504 -1.3739 0.8680 36 1 6.1769 -2.7592 -0.1446 37 1 7.3361 -1.6918 -2.7770 38 1 8.9634 -2.3877 -2.5853 39 1 7.5280 -3.3510 -2.1617 40 1 8.6646 -0.0216 0.2733 41 1 9.6272 -0.4432 -1.1631 42 1 7.9999 0.2525 -1.3550 43 1 8.9341 -2.3497 1.1370 44 1 8.4615 -3.7352 0.1247 45 1 11.6408 -4.7929 1.6530 46 1 3.4968 0.6774 -1.7291 47 1 3.7186 -0.9123 -2.4809 48 1 1.9805 -1.8134 -1.0791 49 1 1.4176 -0.4790 -2.1009 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235580430.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:54 Heat of formation + Delta-G solvation = -59.972010 kcal Electronic energy + Delta-G solvation = -21583.107962 eV Core-core repulsion = 18735.469890 eV Total energy + Delta-G solvation = -2847.638072 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.54161 -38.79460 -35.98919 -34.38877 -33.38795 -31.95555 -29.02155 -28.03954 -27.86611 -26.69774 -25.12786 -23.92654 -23.55568 -21.40552 -20.15070 -19.41647 -18.33292 -16.87320 -16.42920 -16.19519 -15.80304 -15.61866 -15.40366 -15.10297 -14.74265 -14.51625 -14.11234 -13.89543 -13.83623 -13.69606 -13.54975 -13.09119 -12.89905 -12.76291 -12.69438 -12.47506 -12.27955 -12.24174 -12.18552 -11.93879 -11.89055 -11.65019 -11.41182 -11.36766 -11.28977 -11.15110 -10.94419 -10.84677 -10.64560 -10.50810 -9.20048 -8.14106 -6.21337 1.40523 1.41290 1.52083 2.43600 3.19647 3.27395 3.68863 3.83085 3.99800 4.12587 4.20112 4.22774 4.25975 4.33251 4.39761 4.41075 4.56731 4.60510 4.76837 4.77866 4.79105 4.86720 4.95172 4.96083 5.00819 5.08692 5.11857 5.16450 5.18475 5.22206 5.23292 5.28436 5.34092 5.42695 5.47323 5.49715 5.50959 5.52764 5.53955 5.58833 5.65344 5.67896 5.87922 5.92790 6.20206 6.38141 6.62263 6.93887 7.46044 8.98357 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.040723 B = 0.003509 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.411392 B = 7978.402377 C = 8225.576151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 H 0.072 0.928 4 C -0.112 4.112 5 C -0.112 4.112 6 C -0.142 4.142 7 C 0.090 3.910 8 H 0.062 0.938 9 N -0.678 5.678 10 C 0.087 3.913 11 C -0.056 4.056 12 C -0.105 4.105 13 C -0.121 4.121 14 C 0.041 3.959 15 C -0.514 4.514 16 H 0.066 0.934 17 C -0.005 4.005 18 N -0.939 5.939 19 Si 0.957 3.043 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.262 1.262 23 C -0.099 4.099 24 C -0.108 4.108 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.343 0.657 35 H 0.014 0.986 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.038 0.962 39 H 0.028 0.972 40 H 0.035 0.965 41 H 0.047 0.953 42 H 0.068 0.932 43 H -0.018 1.018 44 H -0.018 1.018 45 H 0.260 0.740 46 H 0.063 0.937 47 H 0.061 0.939 48 H 0.052 0.948 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.800 11.076 -3.595 22.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 H 0.090 0.910 4 C -0.150 4.150 5 C -0.151 4.151 6 C -0.181 4.181 7 C -0.020 4.020 8 H 0.080 0.920 9 N -0.309 5.309 10 C -0.043 4.043 11 C -0.056 4.056 12 C -0.163 4.163 13 C -0.178 4.178 14 C 0.003 3.997 15 C -0.552 4.552 16 H 0.085 0.915 17 C -0.202 4.202 18 N -0.580 5.580 19 Si 0.782 3.218 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.187 1.187 23 C -0.137 4.137 24 C -0.146 4.146 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.162 0.838 35 H 0.032 0.968 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.057 0.943 39 H 0.047 0.953 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.000 1.000 44 H 0.000 1.000 45 H 0.068 0.932 46 H 0.082 0.918 47 H 0.079 0.921 48 H 0.071 0.929 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.878 10.471 -3.952 22.812 hybrid contribution 1.432 -0.122 1.127 1.826 sum -18.446 10.348 -2.825 21.338 Atomic orbital electron populations 1.21871 0.94393 1.01823 1.01994 1.20892 0.95843 0.99663 0.94163 0.90956 1.21412 0.96212 0.99451 0.97899 1.21830 0.95335 1.00709 0.97188 1.22077 0.98837 1.00147 0.97064 1.21325 0.88747 0.98120 0.93760 0.91968 1.60635 1.02154 1.16082 1.52069 1.21765 0.92814 0.96220 0.93480 1.20504 0.92883 0.96021 0.96220 1.21489 1.00135 0.99269 0.95376 1.21671 1.00644 0.95281 1.00208 1.18995 0.94143 0.92993 0.93538 1.21625 0.95988 1.26356 1.11227 0.91550 1.25939 1.03176 0.95581 0.95482 1.70114 1.35217 1.31215 1.21477 0.85565 0.79763 0.77248 0.79213 1.20030 1.21246 1.18653 1.20369 0.94036 1.01444 0.97844 1.20499 0.95864 1.00054 0.98193 0.92368 0.92161 0.92824 0.93069 0.91511 0.93635 0.91546 0.93740 0.90826 0.83753 0.96810 0.93127 0.91298 0.94299 0.95294 0.94632 0.93415 0.91363 0.99968 0.99976 0.93168 0.91831 0.92072 0.92938 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.87 71.98 0.64 -1.16 16 2 C -0.09 -1.32 2.39 -11.19 -0.03 -1.34 16 3 H 0.07 1.10 6.99 -2.38 -0.02 1.09 16 4 C -0.11 -1.92 4.89 30.14 0.15 -1.78 16 5 C -0.11 -2.18 5.85 31.32 0.18 -2.00 16 6 C -0.14 -3.02 4.72 30.14 0.14 -2.88 16 7 C 0.09 2.12 2.14 44.51 0.10 2.22 16 8 H 0.06 1.66 6.67 -2.39 -0.02 1.64 16 9 N -0.68 -18.92 5.38 -493.63 -2.66 -21.58 16 10 C 0.09 3.06 4.38 86.30 0.38 3.44 16 11 C -0.06 -2.27 0.60 -52.18 -0.03 -2.30 16 12 C -0.11 -4.09 8.06 71.98 0.58 -3.51 16 13 C -0.12 -4.42 7.89 71.98 0.57 -3.85 16 14 C 0.04 2.17 4.04 29.85 0.12 2.29 16 15 C -0.51 -28.86 7.65 25.60 0.20 -28.66 16 16 H 0.07 3.57 5.68 -2.91 -0.02 3.55 16 17 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 18 N -0.94 -58.18 13.29 21.45 0.28 -57.89 16 19 Si 0.96 44.90 29.54 68.60 2.03 46.93 16 20 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 22 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 23 C -0.10 -1.93 4.90 28.74 0.14 -1.79 16 24 C -0.11 -1.80 4.69 28.74 0.13 -1.67 16 25 H 0.06 0.67 8.09 -2.38 -0.02 0.65 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 28 H 0.05 0.98 6.64 -2.39 -0.02 0.97 16 29 H 0.07 1.02 7.67 -2.39 -0.02 1.00 16 30 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.04 1.09 7.17 -2.39 -0.02 1.07 16 33 H 0.07 1.37 6.63 -2.39 -0.02 1.36 16 34 H 0.34 8.94 6.49 -89.69 -0.58 8.35 16 35 H 0.01 0.51 7.47 -2.39 -0.02 0.49 16 36 H 0.05 1.91 8.06 -2.39 -0.02 1.90 16 37 H 0.07 2.31 7.60 -2.39 -0.02 2.29 16 38 H 0.04 1.60 6.62 -2.39 -0.02 1.59 16 39 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.05 1.89 6.62 -2.39 -0.02 1.88 16 42 H 0.07 2.02 6.57 -2.39 -0.02 2.00 16 43 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 44 H -0.02 -1.07 8.14 -2.38 -0.02 -1.09 16 45 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 46 H 0.06 1.13 7.47 -2.39 -0.02 1.12 16 47 H 0.06 1.33 8.12 -2.39 -0.02 1.31 16 48 H 0.05 0.96 7.47 -2.39 -0.02 0.94 16 49 H 0.07 1.03 7.97 -2.39 -0.02 1.01 16 Total: -1.00 -62.16 355.51 3.68 -58.47 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.30 Total: 16.90 kcal Atomic # 6 Polarization: -46.57 SS G_CDS: 3.73 Total: -42.84 kcal Atomic # 7 Polarization: -77.10 SS G_CDS: -2.37 Total: -79.47 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -62.16 3.68 -58.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235580430.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.498 kcal (2) G-P(sol) polarization free energy of solvation -62.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds