Wall clock time and date at job start Mon Mar 30 2020 08:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47159 * 2 1 4 4 C 1.53005 * 109.47264 * 119.99893 * 2 1 3 5 5 H 1.08996 * 109.46835 * 300.00390 * 4 2 1 6 6 C 1.52996 * 109.47264 * 179.97438 * 4 2 1 7 7 C 1.53004 * 109.47082 * 180.02562 * 6 4 2 8 8 C 1.52993 * 109.47425 * 59.99483 * 7 6 4 9 9 H 1.09001 * 109.47066 * 60.00485 * 8 7 6 10 10 C 1.53005 * 109.47052 * 180.02562 * 8 7 6 11 11 C 1.52996 * 109.47412 * 300.00314 * 8 7 6 12 12 C 1.53002 * 109.46895 * 59.99605 * 4 2 1 13 13 H 1.09000 * 109.47289 * 300.00076 * 12 4 2 14 14 N 1.46903 * 109.47276 * 60.00636 * 12 4 2 15 15 C 1.46893 * 111.00119 * 204.99755 * 14 12 4 16 16 C 1.53000 * 109.47186 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47355 * 179.97438 * 16 15 14 18 18 C 1.50694 * 109.47168 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00563 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46985 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47276 * 299.99832 * 22 20 18 25 25 H 1.48498 * 109.47150 * 60.00043 * 22 20 18 26 26 H 1.08999 * 109.47352 * 60.00076 * 1 2 3 27 27 H 1.09010 * 109.47337 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47513 * 300.00132 * 1 2 3 29 29 H 1.09001 * 109.47145 * 239.99590 * 2 1 3 30 30 H 1.09005 * 109.47376 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46948 * 299.99657 * 3 2 1 32 32 H 1.09001 * 109.47427 * 59.99763 * 3 2 1 33 33 H 1.09001 * 109.47145 * 299.99698 * 6 4 2 34 34 H 1.08995 * 109.47250 * 60.00176 * 6 4 2 35 35 H 1.08998 * 109.47299 * 180.02562 * 7 6 4 36 36 H 1.09001 * 109.46603 * 299.99685 * 7 6 4 37 37 H 1.08996 * 109.46835 * 60.00790 * 10 8 7 38 38 H 1.09006 * 109.46773 * 179.97438 * 10 8 7 39 39 H 1.09000 * 109.47214 * 300.00127 * 10 8 7 40 40 H 1.09001 * 109.47145 * 300.00123 * 11 8 7 41 41 H 1.08997 * 109.47605 * 180.02562 * 11 8 7 42 42 H 1.00908 * 110.99499 * 328.94851 * 14 12 4 43 43 H 1.09002 * 109.47091 * 59.99841 * 15 14 12 44 44 H 1.08992 * 109.47497 * 299.99732 * 15 14 12 45 45 H 1.09002 * 109.46807 * 60.00192 * 16 15 14 46 46 H 1.08998 * 109.47285 * 299.99794 * 16 15 14 47 47 H 1.09007 * 109.46922 * 59.99890 * 17 16 15 48 48 H 1.09003 * 109.46836 * 300.00646 * 17 16 15 49 49 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -0.2074 2.1392 6 6 3.5700 -0.7218 1.2490 7 6 4.0800 -1.4436 2.4979 8 6 3.5694 -2.8858 2.4978 9 1 3.9324 -3.3996 1.6076 10 6 4.0789 -3.6074 3.7471 11 6 2.0394 -2.8853 2.4981 12 6 1.5299 -2.1637 1.2493 13 1 0.4399 -2.1637 1.2493 14 7 2.0196 -2.8564 0.0499 15 6 1.1359 -3.9729 -0.3108 16 6 1.6770 -4.6678 -1.5620 17 6 0.7569 -5.8312 -1.9374 18 6 1.2902 -6.5160 -3.1694 19 1 2.1950 -6.1576 -3.6375 20 6 0.6228 -7.6002 -3.6989 21 7 -0.4788 -8.0369 -3.1285 22 14 1.2835 -8.4485 -5.2264 23 1 0.3906 -9.5778 -5.5907 24 1 1.3367 -7.4771 -6.3483 25 1 2.6487 -8.9655 -4.9541 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9562 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.9329 -1.2360 0.3590 34 1 3.9337 0.3057 1.2487 35 1 5.1700 -1.4436 2.4980 36 1 3.7170 -0.9298 3.3881 37 1 3.7155 -3.0935 4.6370 38 1 3.7147 -4.6348 3.7472 39 1 5.1689 -3.6078 3.7473 40 1 1.6765 -2.3714 3.3882 41 1 1.6757 -3.9127 2.4984 42 1 2.1239 -2.2140 -0.7213 43 1 0.1340 -3.5933 -0.5111 44 1 1.0965 -4.6858 0.5127 45 1 2.6790 -5.0474 -1.3621 46 1 1.7160 -3.9548 -2.3854 47 1 -0.2453 -5.4520 -2.1371 48 1 0.7182 -6.5441 -1.1138 49 1 -0.9484 -8.7994 -3.5013 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247007885.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:02 Heat of formation + Delta-G solvation = -68.879030 kcal Electronic energy + Delta-G solvation = -21586.711908 eV Core-core repulsion = 18738.687599 eV Total energy + Delta-G solvation = -2848.024309 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.87635 -36.94921 -36.49438 -35.13324 -33.03581 -31.85893 -30.22176 -28.00933 -27.65184 -26.94550 -24.37209 -22.95684 -22.75330 -21.83505 -20.59218 -19.78907 -18.48610 -17.15701 -16.60355 -16.52882 -15.67966 -15.62106 -15.33216 -14.91462 -14.73610 -14.45731 -14.13719 -13.91735 -13.75491 -13.47386 -13.36601 -13.08752 -12.97548 -12.95245 -12.75707 -12.67207 -12.47574 -12.25614 -12.17333 -11.85926 -11.83783 -11.77143 -11.54474 -11.43977 -11.36341 -11.20693 -11.02859 -10.80253 -10.56077 -10.55013 -9.19174 -8.20257 -6.31581 1.39355 1.42886 1.50801 2.40853 3.12660 3.30169 3.73652 3.75037 3.94677 4.10876 4.20026 4.22100 4.27872 4.37806 4.44021 4.55529 4.58338 4.70021 4.72158 4.75649 4.78699 4.82710 4.87953 4.95201 4.97183 4.99673 5.03897 5.06186 5.08260 5.11230 5.17542 5.19348 5.26150 5.28486 5.38554 5.41368 5.48540 5.51676 5.54406 5.59871 5.62859 5.74918 5.80572 5.85341 6.17801 6.29746 6.59972 6.85072 7.37642 8.91586 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.019599 B = 0.004016 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.300662 B = 6969.814487 C = 7736.427222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.142 4.142 4 C -0.073 4.073 5 H 0.081 0.919 6 C -0.107 4.107 7 C -0.105 4.105 8 C -0.083 4.083 9 H 0.061 0.939 10 C -0.145 4.145 11 C -0.100 4.100 12 C 0.088 3.912 13 H 0.034 0.966 14 N -0.675 5.675 15 C 0.076 3.924 16 C -0.089 4.089 17 C 0.027 3.973 18 C -0.544 4.544 19 H 0.059 0.941 20 C -0.001 4.001 21 N -0.934 5.934 22 Si 0.966 3.034 23 H -0.282 1.282 24 H -0.266 1.266 25 H -0.267 1.267 26 H 0.055 0.945 27 H 0.038 0.962 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.041 0.959 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.039 0.961 42 H 0.340 0.660 43 H 0.015 0.985 44 H 0.055 0.945 45 H 0.051 0.949 46 H 0.048 0.952 47 H -0.011 1.011 48 H -0.011 1.011 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.087 19.111 12.219 23.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.115 4.115 3 C -0.199 4.199 4 C -0.091 4.091 5 H 0.099 0.901 6 C -0.144 4.144 7 C -0.142 4.142 8 C -0.101 4.101 9 H 0.080 0.920 10 C -0.203 4.203 11 C -0.138 4.138 12 C -0.021 4.021 13 H 0.052 0.948 14 N -0.309 5.309 15 C -0.053 4.053 16 C -0.127 4.127 17 C -0.011 4.011 18 C -0.582 4.582 19 H 0.077 0.923 20 C -0.198 4.198 21 N -0.575 5.575 22 Si 0.790 3.210 23 H -0.207 1.207 24 H -0.191 1.191 25 H -0.192 1.192 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.058 0.942 42 H 0.161 0.839 43 H 0.034 0.966 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.007 0.993 48 H 0.007 0.993 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.394 18.599 12.561 23.630 hybrid contribution -1.033 -0.622 -1.185 1.690 sum 6.361 17.977 11.377 22.205 Atomic orbital electron populations 1.21894 0.95690 1.00941 1.02132 1.21182 0.95353 0.97199 0.97757 1.21825 1.01493 0.94606 1.01955 1.21287 0.96391 0.93124 0.98320 0.90068 1.21526 0.94044 1.00379 0.98456 1.21503 1.00054 0.94615 0.98032 1.20950 0.94544 0.96539 0.98094 0.92031 1.21828 1.00940 0.99723 0.97767 1.21551 0.96378 0.99271 0.96587 1.21593 0.96245 0.93482 0.90792 0.94764 1.60570 1.50215 1.12443 1.07643 1.21796 0.93135 0.93410 0.96980 1.21342 0.98939 0.96729 0.95721 1.18954 0.94153 0.93124 0.94871 1.21665 1.10092 1.14180 1.12232 0.92274 1.25999 0.95124 0.97860 1.00847 1.70099 1.18631 1.26454 1.42276 0.85491 0.78402 0.77971 0.79135 1.20725 1.19087 1.19183 0.92571 0.94308 0.91847 0.92158 0.91775 0.92734 0.92107 0.92438 0.90827 0.91967 0.91695 0.92169 0.93981 0.92447 0.91167 0.94201 0.83906 0.96641 0.92650 0.93030 0.93346 0.99311 0.99295 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.84 71.98 0.64 -2.23 16 2 C -0.10 -1.74 2.27 -10.80 -0.02 -1.77 16 3 C -0.14 -2.05 8.84 71.98 0.64 -1.41 16 4 C -0.07 -1.34 1.55 -10.79 -0.02 -1.36 16 5 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 6 C -0.11 -1.90 4.69 30.59 0.14 -1.76 16 7 C -0.10 -1.86 5.20 30.59 0.16 -1.70 16 8 C -0.08 -1.82 2.56 -10.80 -0.03 -1.85 16 9 H 0.06 1.69 7.60 -2.39 -0.02 1.67 16 10 C -0.15 -2.87 9.19 71.98 0.66 -2.21 16 11 C -0.10 -2.34 4.81 30.58 0.15 -2.19 16 12 C 0.09 2.11 1.94 44.90 0.09 2.20 16 13 H 0.03 0.89 6.09 -2.39 -0.01 0.88 16 14 N -0.68 -19.26 4.82 -491.65 -2.37 -21.63 16 15 C 0.08 2.74 5.48 86.30 0.47 3.21 16 16 C -0.09 -3.85 5.41 30.59 0.17 -3.68 16 17 C 0.03 1.46 4.97 29.85 0.15 1.61 16 18 C -0.54 -31.96 9.11 25.60 0.23 -31.73 16 19 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 20 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 21 N -0.93 -58.20 13.29 21.45 0.28 -57.91 16 22 Si 0.97 45.14 29.54 68.60 2.03 47.16 16 23 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.04 0.88 6.43 -2.38 -0.02 0.87 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.06 1.25 6.21 -2.39 -0.01 1.23 16 30 H 0.06 0.86 6.43 -2.38 -0.02 0.85 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 1.22 7.48 -2.39 -0.02 1.20 16 34 H 0.07 1.09 6.43 -2.39 -0.02 1.07 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.04 1.09 7.45 -2.39 -0.02 1.07 16 42 H 0.34 9.30 6.01 -89.69 -0.54 8.76 16 43 H 0.02 0.57 8.06 -2.39 -0.02 0.55 16 44 H 0.05 2.10 7.43 -2.39 -0.02 2.08 16 45 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 46 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 47 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 48 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 49 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -63.26 363.10 4.16 -59.10 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.33 Total: 17.72 kcal Atomic # 6 Polarization: -48.34 SS G_CDS: 3.89 Total: -44.45 kcal Atomic # 7 Polarization: -77.45 SS G_CDS: -2.08 Total: -79.54 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -63.26 4.16 -59.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247007885.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.775 kcal (2) G-P(sol) polarization free energy of solvation -63.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds