Wall clock time and date at job start Mon Mar 30 2020 07:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46934 * 2 1 4 4 H 1.09006 * 109.46680 * 175.56744 * 3 2 1 5 5 C 1.50698 * 109.47382 * 55.56996 * 3 2 1 6 6 H 1.07994 * 120.00053 * 243.50150 * 5 3 2 7 7 C 1.37878 * 119.99763 * 63.49659 * 5 3 2 8 8 N 1.31511 * 120.00458 * 8.94903 * 7 5 3 9 9 Si 1.86800 * 119.99779 * 188.67095 * 7 5 3 10 10 H 1.48504 * 109.47241 * 60.00149 * 9 7 5 11 11 H 1.48503 * 109.47421 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47139 * 300.00372 * 9 7 5 13 13 N 1.46898 * 109.47302 * 295.56721 * 3 2 1 14 14 C 1.46904 * 110.99882 * 272.97110 * 13 3 2 15 15 H 1.08998 * 109.47393 * 39.39252 * 14 13 3 16 16 C 1.53004 * 109.46727 * 279.38799 * 14 13 3 17 17 C 1.53006 * 109.46574 * 179.97438 * 16 14 13 18 18 H 1.08993 * 109.47148 * 300.00117 * 17 16 14 19 19 C 1.53006 * 109.46621 * 180.02562 * 17 16 14 20 20 C 1.52997 * 109.47106 * 60.00599 * 17 16 14 21 21 C 1.53003 * 109.47012 * 299.99744 * 20 17 16 22 22 C 1.52996 * 109.47132 * 59.99812 * 21 20 17 23 23 H 1.09006 * 109.47089 * 60.00438 * 22 21 20 24 24 C 1.53003 * 109.47132 * 179.97438 * 22 21 20 25 25 C 1.53001 * 109.46883 * 295.83907 * 24 22 21 26 26 C 1.52999 * 109.46895 * 55.83514 * 24 22 21 27 27 H 1.08999 * 109.47598 * 185.73080 * 1 2 3 28 28 H 1.09001 * 109.47259 * 305.72842 * 1 2 3 29 29 H 1.08997 * 109.47559 * 65.72965 * 1 2 3 30 30 H 1.09001 * 109.46847 * 240.00266 * 2 1 3 31 31 H 1.08995 * 109.47392 * 119.99812 * 2 1 3 32 32 H 0.97003 * 119.99855 * 2.75788 * 8 7 5 33 33 H 1.00898 * 110.99856 * 36.92185 * 13 3 2 34 34 H 1.08993 * 109.47478 * 299.99883 * 16 14 13 35 35 H 1.08997 * 109.47024 * 60.00909 * 16 14 13 36 36 H 1.08995 * 109.47388 * 59.99961 * 19 17 16 37 37 H 1.09000 * 109.46762 * 180.02562 * 19 17 16 38 38 H 1.09006 * 109.46940 * 300.00001 * 19 17 16 39 39 H 1.08998 * 109.47088 * 59.99574 * 20 17 16 40 40 H 1.09000 * 109.47250 * 179.97438 * 20 17 16 41 41 H 1.08995 * 109.46674 * 180.02562 * 21 20 17 42 42 H 1.09002 * 109.46337 * 299.99845 * 21 20 17 43 43 H 1.08994 * 109.47124 * 175.83561 * 24 22 21 44 44 H 1.08999 * 109.47269 * 65.89154 * 25 24 22 45 45 H 1.09001 * 109.46706 * 185.88645 * 25 24 22 46 46 H 1.08994 * 109.47077 * 305.88712 * 25 24 22 47 47 H 1.08995 * 109.47656 * 300.00329 * 26 24 22 48 48 H 1.09001 * 109.46821 * 60.00335 * 26 24 22 49 49 H 1.08998 * 109.47304 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1271 1.4435 0.0794 5 6 1.4500 2.1839 1.1719 6 1 0.7930 3.0244 1.0038 7 6 1.7490 1.7891 2.4586 8 7 2.6804 0.8850 2.6695 9 14 0.8364 2.5442 3.9031 10 1 -0.6163 2.2660 3.7709 11 1 1.3404 1.9552 5.1697 12 1 1.0599 4.0122 3.9171 13 7 1.6396 2.1035 -1.2493 14 6 2.6290 1.8687 -2.3095 15 1 2.9892 0.8417 -2.2496 16 6 3.8042 2.8325 -2.1328 17 6 4.8350 2.5875 -3.2366 18 1 5.1950 1.5606 -3.1761 19 6 6.0104 3.5509 -3.0595 20 6 4.1852 2.8207 -4.6020 21 6 3.0100 1.8570 -4.7787 22 6 1.9793 2.1019 -3.6749 23 1 1.6192 3.1289 -3.7354 24 6 0.8038 1.1386 -3.8520 25 6 0.0905 1.4417 -5.1712 26 6 1.3223 -0.3007 -3.8715 27 1 -0.3634 -1.0225 0.1026 28 1 -0.3634 0.6001 0.8343 29 1 -0.3634 0.4224 -0.9368 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.1848 0.5251 1.9231 33 1 0.7210 1.8030 -1.5391 34 1 3.4441 3.8595 -2.1928 35 1 4.2674 2.6660 -1.1603 36 1 6.4732 3.3845 -2.0868 37 1 6.7446 3.3767 -3.8461 38 1 5.6506 4.5781 -3.1197 39 1 3.8252 3.8477 -4.6624 40 1 4.9197 2.6466 -5.3884 41 1 2.5474 2.0228 -5.7516 42 1 3.3702 0.8300 -4.7183 43 1 0.1052 1.2620 -3.0245 44 1 0.7568 1.2179 -6.0043 45 1 -0.8067 0.8275 -5.2486 46 1 -0.1868 2.4953 -5.2006 47 1 2.0210 -0.4240 -4.6990 48 1 1.8305 -0.5165 -2.9317 49 1 0.4849 -0.9869 -3.9972 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251333299.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:21 Heat of formation + Delta-G solvation = -60.840656 kcal Electronic energy + Delta-G solvation = -22772.828203 eV Core-core repulsion = 19925.152464 eV Total energy + Delta-G solvation = -2847.675739 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.95981 -37.92615 -36.56083 -34.42694 -32.67489 -31.63543 -29.56942 -28.08654 -27.53218 -26.82945 -25.48582 -23.65994 -22.63823 -21.17052 -20.90923 -19.77792 -18.66783 -16.99293 -16.22302 -15.93344 -15.85192 -15.52521 -15.51231 -15.06200 -14.69015 -14.58169 -14.25428 -13.90287 -13.85154 -13.60006 -13.25233 -13.10061 -13.02194 -12.79405 -12.63660 -12.53477 -12.40826 -12.09840 -11.99753 -11.97485 -11.88717 -11.78180 -11.72072 -11.60144 -11.49579 -11.19991 -10.92978 -10.69735 -10.54967 -10.30819 -8.93304 -8.49605 -6.17598 1.53595 1.60658 1.79554 2.60155 3.26130 3.46702 3.73084 3.76857 3.91356 4.04391 4.16799 4.20972 4.31362 4.35027 4.41866 4.44970 4.48408 4.55149 4.62128 4.67214 4.75395 4.76226 4.84136 4.84370 4.90060 4.97700 5.00150 5.04545 5.08839 5.12275 5.14252 5.20315 5.22606 5.27631 5.29295 5.37835 5.41047 5.42202 5.45662 5.52175 5.55945 5.58344 5.65789 6.07569 6.24977 6.60524 6.86043 6.90295 7.57667 8.85435 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.018276 B = 0.006443 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.700627 B = 4344.626875 C = 5314.367700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.139 4.139 3 C 0.215 3.785 4 H -0.014 1.014 5 C -0.574 4.574 6 H 0.042 0.958 7 C -0.028 4.028 8 N -0.939 5.939 9 Si 1.105 2.895 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.681 5.681 14 C 0.095 3.905 15 H 0.018 0.982 16 C -0.095 4.095 17 C -0.088 4.088 18 H 0.058 0.942 19 C -0.142 4.142 20 C -0.106 4.106 21 C -0.109 4.109 22 C -0.071 4.071 23 H 0.067 0.933 24 C -0.096 4.096 25 C -0.138 4.138 26 C -0.147 4.147 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.035 0.965 31 H 0.034 0.966 32 H 0.255 0.745 33 H 0.333 0.667 34 H 0.054 0.946 35 H 0.020 0.980 36 H 0.039 0.961 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.062 0.938 43 H 0.051 0.949 44 H 0.069 0.931 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.071 0.929 48 H 0.031 0.969 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.557 0.948 -17.910 17.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.179 4.179 3 C 0.106 3.894 4 H 0.004 0.996 5 C -0.613 4.613 6 H 0.060 0.940 7 C -0.226 4.226 8 N -0.578 5.578 9 Si 0.928 3.072 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.314 5.314 14 C -0.015 4.015 15 H 0.035 0.965 16 C -0.133 4.133 17 C -0.107 4.107 18 H 0.076 0.924 19 C -0.199 4.199 20 C -0.144 4.144 21 C -0.146 4.146 22 C -0.090 4.090 23 H 0.085 0.915 24 C -0.114 4.114 25 C -0.195 4.195 26 C -0.204 4.204 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.155 0.845 34 H 0.073 0.927 35 H 0.039 0.961 36 H 0.058 0.942 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.090 0.910 48 H 0.050 0.950 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.458 1.524 -16.090 16.168 hybrid contribution 0.294 -1.036 -1.032 1.491 sum -0.164 0.488 -17.122 17.129 Atomic orbital electron populations 1.21480 0.95080 1.00063 1.01221 1.22043 0.97499 0.99998 0.98390 1.19008 0.92743 0.89180 0.88518 0.99594 1.22106 1.30576 1.16208 0.92367 0.93955 1.26937 0.96796 0.96025 1.02854 1.70916 1.21927 1.30164 1.34784 0.83081 0.75556 0.75515 0.73001 1.19588 1.21357 1.20328 1.60700 1.04918 1.62564 1.03239 1.21502 0.92839 0.95712 0.91421 0.96460 1.21511 0.95427 0.99340 0.97015 1.21116 0.95025 0.99373 0.95225 0.92397 1.21785 0.97562 0.99227 1.01366 1.21563 0.97470 0.99781 0.95560 1.21641 0.95188 0.99650 0.98169 1.21219 0.95393 0.99286 0.93092 0.91472 1.21150 0.96485 0.95063 0.98741 1.21792 1.00144 1.01562 0.95984 1.21933 1.01228 0.96003 1.01248 0.93387 0.93365 0.92946 0.94614 0.94763 0.93493 0.84488 0.92713 0.96110 0.94181 0.90846 0.92530 0.91876 0.90186 0.89658 0.91905 0.93041 0.91241 0.92373 0.92573 0.91014 0.94973 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.05 9.40 71.98 0.68 -4.38 16 2 C -0.14 -6.55 5.45 30.59 0.17 -6.39 16 3 C 0.21 10.91 1.76 44.17 0.08 10.99 16 4 H -0.01 -0.80 6.18 -2.38 -0.01 -0.81 16 5 C -0.57 -32.46 7.22 25.60 0.18 -32.27 16 6 H 0.04 2.45 7.83 -2.91 -0.02 2.42 16 7 C -0.03 -1.63 5.23 84.66 0.44 -1.19 16 8 N -0.94 -57.74 12.93 21.45 0.28 -57.46 16 9 Si 1.11 51.51 29.91 68.60 2.05 53.56 16 10 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 11 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 12 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 13 N -0.68 -29.12 6.04 -473.30 -2.86 -31.98 16 14 C 0.10 3.38 1.56 44.91 0.07 3.45 16 15 H 0.02 0.68 5.66 -2.39 -0.01 0.66 16 16 C -0.09 -3.38 4.64 30.60 0.14 -3.24 16 17 C -0.09 -2.38 2.72 -10.79 -0.03 -2.41 16 18 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 19 C -0.14 -3.41 9.19 71.98 0.66 -2.75 16 20 C -0.11 -2.25 5.21 30.59 0.16 -2.10 16 21 C -0.11 -2.31 4.48 30.59 0.14 -2.18 16 22 C -0.07 -1.92 1.66 -10.79 -0.02 -1.93 16 23 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 24 C -0.10 -2.38 2.54 -10.79 -0.03 -2.40 16 25 C -0.14 -2.61 8.78 71.98 0.63 -1.97 16 26 C -0.15 -3.59 8.47 71.98 0.61 -2.98 16 27 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.05 2.24 6.87 -2.39 -0.02 2.23 16 29 H 0.05 1.94 6.32 -2.39 -0.02 1.93 16 30 H 0.04 1.54 6.14 -2.39 -0.01 1.52 16 31 H 0.03 1.81 6.33 -2.39 -0.02 1.79 16 32 H 0.25 15.94 6.06 -92.71 -0.56 15.38 16 33 H 0.33 13.41 4.05 -89.70 -0.36 13.05 16 34 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.02 0.88 7.13 -2.39 -0.02 0.86 16 36 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.08 1.45 6.67 -2.39 -0.02 1.44 16 42 H 0.06 1.36 6.36 -2.39 -0.02 1.34 16 43 H 0.05 1.50 5.76 -2.39 -0.01 1.48 16 44 H 0.07 1.11 6.84 -2.39 -0.02 1.09 16 45 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.07 1.50 6.36 -2.39 -0.02 1.48 16 48 H 0.03 0.95 5.20 -2.39 -0.01 0.94 16 49 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -63.39 345.97 4.10 -59.29 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: 0.74 Total: 28.34 kcal Atomic # 6 Polarization: -55.63 SS G_CDS: 3.89 Total: -51.74 kcal Atomic # 7 Polarization: -86.87 SS G_CDS: -2.58 Total: -89.45 kcal Atomic # 14 Polarization: 51.51 SS G_CDS: 2.05 Total: 53.56 kcal Total: -63.39 4.10 -59.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251333299.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.547 kcal (2) G-P(sol) polarization free energy of solvation -63.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds