Wall clock time and date at job start Mon Mar 30 2020 07:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47490 * 2 1 4 4 C 1.53013 * 109.46931 * 119.99802 * 2 1 3 5 5 N 1.46898 * 109.47026 * 61.10715 * 4 2 1 6 6 C 1.46897 * 111.00101 * 77.56964 * 5 4 2 7 7 C 1.50699 * 109.47094 * 285.13558 * 6 5 4 8 8 H 1.07999 * 120.00152 * 354.37527 * 7 6 5 9 9 C 1.37880 * 119.99870 * 174.38256 * 7 6 5 10 10 N 1.31511 * 119.99789 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 119.99801 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47195 * 59.99874 * 11 9 7 13 13 H 1.48503 * 109.46941 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.47193 * 299.99631 * 11 9 7 15 15 C 1.46903 * 110.99765 * 201.52843 * 5 4 2 16 16 H 1.08996 * 109.47107 * 54.99412 * 15 5 4 17 17 C 1.53006 * 109.46715 * 294.99759 * 15 5 4 18 18 C 1.53001 * 109.47000 * 180.02562 * 17 15 5 19 19 C 1.52999 * 109.47118 * 60.00083 * 18 17 15 20 20 H 1.09003 * 109.47454 * 59.99738 * 19 18 17 21 21 C 1.53001 * 109.47118 * 180.02562 * 19 18 17 22 22 C 1.53006 * 109.47117 * 299.99845 * 19 18 17 23 23 H 1.09003 * 109.46871 * 300.00250 * 22 19 18 24 24 C 1.52999 * 109.47117 * 179.97438 * 22 19 18 25 25 C 1.52999 * 109.47109 * 175.00023 * 15 5 4 26 26 H 1.08996 * 109.47432 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46996 * 300.00488 * 1 2 3 28 28 H 1.08999 * 109.46912 * 59.99960 * 1 2 3 29 29 H 1.09000 * 109.47538 * 239.99289 * 2 1 3 30 30 H 1.09005 * 109.47175 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46993 * 299.99553 * 3 2 1 32 32 H 1.08995 * 109.47233 * 59.99887 * 3 2 1 33 33 H 1.09003 * 109.46744 * 301.10657 * 4 2 1 34 34 H 1.08996 * 109.46710 * 181.10820 * 4 2 1 35 35 H 1.08993 * 109.46898 * 45.13709 * 6 5 4 36 36 H 1.09000 * 109.46774 * 165.13563 * 6 5 4 37 37 H 0.97006 * 119.99709 * 180.02562 * 10 9 7 38 38 H 1.09003 * 109.46871 * 300.00018 * 17 15 5 39 39 H 1.08998 * 109.46961 * 60.00181 * 17 15 5 40 40 H 1.08998 * 109.46947 * 179.97438 * 18 17 15 41 41 H 1.08996 * 109.46812 * 299.99647 * 18 17 15 42 42 H 1.08998 * 109.46692 * 60.00094 * 21 19 18 43 43 H 1.09004 * 109.47075 * 179.97438 * 21 19 18 44 44 H 1.08998 * 109.46947 * 299.99769 * 21 19 18 45 45 H 1.08999 * 109.47095 * 60.00271 * 24 22 19 46 46 H 1.08998 * 109.47023 * 179.97438 * 24 22 19 47 47 H 1.08997 * 109.47131 * 299.99645 * 24 22 19 48 48 H 1.08998 * 109.47023 * 299.99368 * 25 15 5 49 49 H 1.09003 * 109.47454 * 59.99383 * 25 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2494 5 7 1.5722 -2.1137 1.2361 6 6 2.3725 -2.9291 0.3127 7 6 1.9823 -2.6091 -1.1072 8 1 1.1556 -1.9422 -1.3029 9 6 2.6807 -3.1677 -2.1567 10 7 3.6876 -3.9794 -1.9184 11 14 2.1966 -2.7715 -3.9168 12 1 2.3146 -1.3090 -4.1454 13 1 3.0970 -3.4925 -4.8520 14 1 0.7937 -3.1977 -4.1522 15 6 1.5838 -2.6859 2.5891 16 1 0.9992 -2.0526 3.2563 17 6 3.0252 -2.7672 3.0960 18 6 3.0374 -3.3637 4.5049 19 6 2.4291 -4.7671 4.4698 20 1 3.0138 -5.4000 3.8022 21 6 2.4407 -5.3633 5.8789 22 6 0.9877 -4.6858 3.9629 23 1 0.4030 -4.0529 4.6305 24 6 0.3797 -6.0893 3.9273 25 6 0.9754 -4.0892 2.5546 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8901 32 1 1.6767 1.9563 0.8899 33 1 1.6604 -0.2189 2.1392 34 1 3.1297 -0.7041 1.2593 35 1 3.4302 -2.7092 0.4573 36 1 2.1907 -3.9856 0.5102 37 1 4.1792 -4.3721 -2.6567 38 1 3.6098 -3.4005 2.4286 39 1 3.4586 -1.7674 3.1205 40 1 4.0642 -3.4220 4.8658 41 1 2.4527 -2.7308 5.1724 42 1 1.8556 -4.7303 6.5460 43 1 2.0069 -6.3630 5.8540 44 1 3.4674 -5.4212 6.2404 45 1 0.3884 -6.5146 4.9308 46 1 -0.6472 -6.0313 3.5666 47 1 0.9645 -6.7218 3.2594 48 1 -0.0514 -4.0313 2.1935 49 1 1.5600 -4.7225 1.8872 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251949009.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:31 Heat of formation + Delta-G solvation = -34.197361 kcal Electronic energy + Delta-G solvation = -22450.824201 eV Core-core repulsion = 19604.303801 eV Total energy + Delta-G solvation = -2846.520399 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.37437 -36.88944 -33.98441 -32.64001 -31.83568 -30.36833 -27.24712 -26.99459 -26.41027 -25.03373 -23.78005 -22.08034 -21.50038 -19.69957 -19.14641 -18.58148 -16.43440 -15.04252 -14.66273 -14.60378 -14.35878 -14.21624 -13.90154 -13.74568 -13.29099 -13.01340 -12.58916 -12.45465 -12.12546 -12.03109 -11.84574 -11.69146 -11.61190 -11.44121 -11.29727 -11.10129 -10.97995 -10.75711 -10.71914 -10.47421 -10.38936 -10.28890 -10.16127 -9.90355 -9.86204 -9.64317 -9.52834 -9.25159 -8.88509 -8.29725 -7.06447 -5.96356 -3.94232 3.35653 3.40074 3.42922 4.46145 4.81578 4.90723 5.00307 5.23166 5.36479 5.39391 5.46811 5.64179 5.67375 5.71655 5.76461 5.78149 5.83040 5.86072 5.94363 6.02137 6.03885 6.08403 6.14705 6.15479 6.20289 6.28272 6.30056 6.32541 6.38693 6.47021 6.48390 6.56774 6.63276 6.64697 6.66559 6.75703 6.88523 6.89745 6.97081 7.22621 7.37837 7.47896 7.51067 7.93643 8.24186 8.34036 8.67808 9.12539 9.66999 11.13831 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.017151 B = 0.006226 C = 0.005229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.186998 B = 4496.014644 C = 5353.093005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.112 4.112 3 C -0.143 4.143 4 C 0.082 3.918 5 N -0.530 5.530 6 C 0.189 3.811 7 C -0.503 4.503 8 H 0.075 0.925 9 C 0.054 3.946 10 N -0.899 5.899 11 Si 0.889 3.111 12 H -0.277 1.277 13 H -0.290 1.290 14 H -0.277 1.277 15 C 0.091 3.909 16 H 0.062 0.938 17 C -0.152 4.152 18 C -0.106 4.106 19 C -0.088 4.088 20 H 0.069 0.931 21 C -0.147 4.147 22 C -0.083 4.083 23 H 0.063 0.937 24 C -0.147 4.147 25 C -0.106 4.106 26 H 0.071 0.929 27 H 0.032 0.968 28 H 0.033 0.967 29 H 0.116 0.884 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.040 0.960 33 H 0.043 0.957 34 H 0.023 0.977 35 H -0.005 1.005 36 H 0.030 0.970 37 H 0.259 0.741 38 H 0.069 0.931 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.050 0.950 43 H 0.055 0.945 44 H 0.049 0.951 45 H 0.051 0.949 46 H 0.052 0.948 47 H 0.054 0.946 48 H 0.065 0.935 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.491 1.504 12.061 12.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.131 4.131 3 C -0.201 4.201 4 C -0.047 4.047 5 N -0.253 5.253 6 C 0.064 3.936 7 C -0.542 4.542 8 H 0.093 0.907 9 C -0.147 4.147 10 N -0.539 5.539 11 Si 0.717 3.283 12 H -0.203 1.203 13 H -0.215 1.215 14 H -0.202 1.202 15 C -0.018 4.018 16 H 0.080 0.920 17 C -0.191 4.191 18 C -0.144 4.144 19 C -0.106 4.106 20 H 0.088 0.912 21 C -0.204 4.204 22 C -0.102 4.102 23 H 0.081 0.919 24 C -0.204 4.204 25 C -0.143 4.143 26 H 0.090 0.910 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.134 0.866 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.041 0.959 35 H 0.013 0.987 36 H 0.048 0.952 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.084 0.916 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.849 1.394 11.780 12.471 hybrid contribution 0.806 0.214 -0.709 1.094 sum -3.043 1.608 11.072 11.595 Atomic orbital electron populations 1.21621 0.95912 1.02311 0.98652 1.21575 0.95814 0.93941 1.01749 1.21831 1.00411 0.97601 1.00248 1.21850 0.96487 0.89816 0.96523 1.62287 1.55673 1.01685 1.05622 1.19832 0.90486 0.92732 0.90506 1.21389 1.15325 1.27241 0.90196 0.90706 1.24985 0.95244 0.95479 0.98979 1.69951 1.20774 1.31560 1.31633 0.86703 0.78383 0.78456 0.84769 1.20261 1.21539 1.20234 1.21624 0.93548 0.95474 0.91178 0.92023 1.22277 0.99847 1.00624 0.96399 1.21507 0.99811 0.95819 0.97308 1.21170 0.96479 0.96635 0.96325 0.91230 1.21887 1.01085 1.00656 0.96779 1.21120 0.95311 0.96345 0.97425 0.91869 1.21869 1.00619 0.96817 1.01107 1.21662 1.01626 0.95795 0.95262 0.91000 0.94891 0.94761 0.86595 0.93481 0.93465 0.94098 0.93878 0.95864 0.98683 0.95208 0.93099 0.91201 0.92730 0.92822 0.92642 0.93090 0.92620 0.93222 0.92983 0.92911 0.92698 0.91650 0.90925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 8.57 37.15 0.32 -1.96 16 2 C -0.11 -2.15 2.42 -90.62 -0.22 -2.37 16 3 C -0.14 -2.32 9.19 37.16 0.34 -1.98 16 4 C 0.08 1.58 3.54 -3.82 -0.01 1.56 16 5 N -0.53 -10.91 3.71 -228.08 -0.85 -11.76 16 6 C 0.19 4.69 3.56 -4.98 -0.02 4.68 16 7 C -0.50 -13.46 7.17 -34.44 -0.25 -13.71 16 8 H 0.08 1.96 5.04 -52.49 -0.26 1.70 16 9 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 10 N -0.90 -26.29 13.29 55.43 0.74 -25.56 16 11 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 C 0.09 1.60 2.18 -67.71 -0.15 1.45 16 16 H 0.06 1.03 7.94 -51.93 -0.41 0.62 16 17 C -0.15 -2.55 4.60 -26.73 -0.12 -2.68 16 18 C -0.11 -1.46 5.20 -26.73 -0.14 -1.60 16 19 C -0.09 -1.15 2.25 -90.62 -0.20 -1.36 16 20 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 21 C -0.15 -1.59 8.84 37.16 0.33 -1.27 16 22 C -0.08 -1.12 2.25 -90.64 -0.20 -1.33 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 C -0.15 -1.80 8.84 37.16 0.33 -1.47 16 25 C -0.11 -1.78 4.34 -26.76 -0.12 -1.89 16 26 H 0.07 1.42 7.19 -51.93 -0.37 1.05 16 27 H 0.03 0.53 8.14 -51.92 -0.42 0.10 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.12 2.64 4.75 -51.93 -0.25 2.39 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.04 0.76 7.78 -51.93 -0.40 0.35 16 34 H 0.02 0.48 7.17 -51.93 -0.37 0.11 16 35 H 0.00 -0.13 7.00 -51.93 -0.36 -0.49 16 36 H 0.03 0.79 5.61 -51.93 -0.29 0.50 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.07 1.36 6.83 -51.93 -0.35 1.00 16 39 H 0.05 0.92 7.04 -51.93 -0.37 0.56 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.05 0.57 6.43 -51.93 -0.33 0.23 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.05 0.55 6.43 -51.93 -0.33 0.22 16 46 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 49 H 0.07 1.41 6.08 -51.93 -0.32 1.09 16 LS Contribution 353.87 15.07 5.33 5.33 Total: -1.00 -27.30 353.87 -9.50 -36.80 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -9.49 Total: 1.30 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: -0.21 Total: -22.51 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: -0.11 Total: -37.31 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.30 -9.50 -36.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251949009.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.602 kcal (2) G-P(sol) polarization free energy of solvation -27.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds