Wall clock time and date at job start Mon Mar 30 2020 07:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47490 * 2 1 4 4 C 1.53013 * 109.46931 * 119.99802 * 2 1 3 5 5 N 1.46898 * 109.47026 * 61.10715 * 4 2 1 6 6 C 1.46897 * 111.00101 * 77.56964 * 5 4 2 7 7 C 1.50699 * 109.47094 * 285.13558 * 6 5 4 8 8 H 1.07999 * 120.00152 * 354.37527 * 7 6 5 9 9 C 1.37880 * 119.99870 * 174.38256 * 7 6 5 10 10 N 1.31511 * 119.99789 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 119.99801 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47195 * 59.99874 * 11 9 7 13 13 H 1.48503 * 109.46941 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.47193 * 299.99631 * 11 9 7 15 15 C 1.46903 * 110.99765 * 201.52843 * 5 4 2 16 16 H 1.08996 * 109.47107 * 54.99412 * 15 5 4 17 17 C 1.53006 * 109.46715 * 294.99759 * 15 5 4 18 18 C 1.53001 * 109.47000 * 180.02562 * 17 15 5 19 19 C 1.52999 * 109.47118 * 60.00083 * 18 17 15 20 20 H 1.09003 * 109.47454 * 59.99738 * 19 18 17 21 21 C 1.53001 * 109.47118 * 180.02562 * 19 18 17 22 22 C 1.53006 * 109.47117 * 299.99845 * 19 18 17 23 23 H 1.09003 * 109.46871 * 300.00250 * 22 19 18 24 24 C 1.52999 * 109.47117 * 179.97438 * 22 19 18 25 25 C 1.52999 * 109.47109 * 175.00023 * 15 5 4 26 26 H 1.08996 * 109.47432 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46996 * 300.00488 * 1 2 3 28 28 H 1.08999 * 109.46912 * 59.99960 * 1 2 3 29 29 H 1.09000 * 109.47538 * 239.99289 * 2 1 3 30 30 H 1.09005 * 109.47175 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46993 * 299.99553 * 3 2 1 32 32 H 1.08995 * 109.47233 * 59.99887 * 3 2 1 33 33 H 1.09003 * 109.46744 * 301.10657 * 4 2 1 34 34 H 1.08996 * 109.46710 * 181.10820 * 4 2 1 35 35 H 1.08993 * 109.46898 * 45.13709 * 6 5 4 36 36 H 1.09000 * 109.46774 * 165.13563 * 6 5 4 37 37 H 0.97006 * 119.99709 * 180.02562 * 10 9 7 38 38 H 1.09003 * 109.46871 * 300.00018 * 17 15 5 39 39 H 1.08998 * 109.46961 * 60.00181 * 17 15 5 40 40 H 1.08998 * 109.46947 * 179.97438 * 18 17 15 41 41 H 1.08996 * 109.46812 * 299.99647 * 18 17 15 42 42 H 1.08998 * 109.46692 * 60.00094 * 21 19 18 43 43 H 1.09004 * 109.47075 * 179.97438 * 21 19 18 44 44 H 1.08998 * 109.46947 * 299.99769 * 21 19 18 45 45 H 1.08999 * 109.47095 * 60.00271 * 24 22 19 46 46 H 1.08998 * 109.47023 * 179.97438 * 24 22 19 47 47 H 1.08997 * 109.47131 * 299.99645 * 24 22 19 48 48 H 1.08998 * 109.47023 * 299.99368 * 25 15 5 49 49 H 1.09003 * 109.47454 * 59.99383 * 25 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2494 5 7 1.5722 -2.1137 1.2361 6 6 2.3725 -2.9291 0.3127 7 6 1.9823 -2.6091 -1.1072 8 1 1.1556 -1.9422 -1.3029 9 6 2.6807 -3.1677 -2.1567 10 7 3.6876 -3.9794 -1.9184 11 14 2.1966 -2.7715 -3.9168 12 1 2.3146 -1.3090 -4.1454 13 1 3.0970 -3.4925 -4.8520 14 1 0.7937 -3.1977 -4.1522 15 6 1.5838 -2.6859 2.5891 16 1 0.9992 -2.0526 3.2563 17 6 3.0252 -2.7672 3.0960 18 6 3.0374 -3.3637 4.5049 19 6 2.4291 -4.7671 4.4698 20 1 3.0138 -5.4000 3.8022 21 6 2.4407 -5.3633 5.8789 22 6 0.9877 -4.6858 3.9629 23 1 0.4030 -4.0529 4.6305 24 6 0.3797 -6.0893 3.9273 25 6 0.9754 -4.0892 2.5546 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8901 32 1 1.6767 1.9563 0.8899 33 1 1.6604 -0.2189 2.1392 34 1 3.1297 -0.7041 1.2593 35 1 3.4302 -2.7092 0.4573 36 1 2.1907 -3.9856 0.5102 37 1 4.1792 -4.3721 -2.6567 38 1 3.6098 -3.4005 2.4286 39 1 3.4586 -1.7674 3.1205 40 1 4.0642 -3.4220 4.8658 41 1 2.4527 -2.7308 5.1724 42 1 1.8556 -4.7303 6.5460 43 1 2.0069 -6.3630 5.8540 44 1 3.4674 -5.4212 6.2404 45 1 0.3884 -6.5146 4.9308 46 1 -0.6472 -6.0313 3.5666 47 1 0.9645 -6.7218 3.2594 48 1 -0.0514 -4.0313 2.1935 49 1 1.5600 -4.7225 1.8872 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251949009.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:30 Heat of formation + Delta-G solvation = -47.542581 kcal Electronic energy + Delta-G solvation = -22451.402893 eV Core-core repulsion = 19604.303801 eV Total energy + Delta-G solvation = -2847.099092 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.75916 -38.34036 -35.42331 -34.68718 -33.04147 -31.77997 -29.20122 -28.19112 -27.79187 -26.31006 -25.45573 -23.76466 -22.71083 -20.97227 -20.55459 -20.17671 -18.44448 -16.69401 -16.38677 -16.06969 -15.79563 -15.58068 -15.19525 -14.99216 -14.69602 -14.47114 -14.14669 -13.92899 -13.73144 -13.52111 -13.04618 -12.94332 -12.86883 -12.73727 -12.65048 -12.62496 -12.58097 -12.38206 -12.20746 -12.09505 -11.79337 -11.68846 -11.48775 -11.39986 -11.29557 -11.23771 -10.94554 -10.76397 -10.73810 -10.40743 -8.80878 -8.11007 -6.15577 1.40790 1.42831 1.49917 2.43481 3.20154 3.33694 3.74256 3.84194 4.03173 4.13866 4.21228 4.23861 4.35888 4.45392 4.54281 4.57151 4.61356 4.63452 4.72681 4.75475 4.82656 4.84290 4.92870 4.94566 4.98231 5.04167 5.10803 5.14229 5.14980 5.17209 5.19154 5.24355 5.26258 5.28852 5.35519 5.39471 5.44539 5.51916 5.55694 5.58109 5.67648 5.72377 5.82988 5.90890 6.22971 6.53421 6.81775 7.00042 7.50100 8.98876 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.017151 B = 0.006226 C = 0.005229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.186998 B = 4496.014644 C = 5353.093005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.115 4.115 3 C -0.136 4.136 4 C 0.084 3.916 5 N -0.533 5.533 6 C 0.214 3.786 7 C -0.506 4.506 8 H 0.080 0.920 9 C -0.001 4.001 10 N -0.939 5.939 11 Si 0.953 3.047 12 H -0.267 1.267 13 H -0.289 1.289 14 H -0.269 1.269 15 C 0.088 3.912 16 H 0.085 0.915 17 C -0.145 4.145 18 C -0.099 4.099 19 C -0.088 4.088 20 H 0.044 0.956 21 C -0.140 4.140 22 C -0.076 4.076 23 H 0.083 0.917 24 C -0.144 4.144 25 C -0.100 4.100 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.040 0.960 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.002 0.998 35 H -0.043 1.043 36 H 0.005 0.995 37 H 0.258 0.742 38 H 0.029 0.971 39 H 0.051 0.949 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.076 0.924 46 H 0.055 0.945 47 H 0.038 0.962 48 H 0.058 0.942 49 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.175 2.929 13.865 15.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.134 4.134 3 C -0.194 4.194 4 C -0.044 4.044 5 N -0.255 5.255 6 C 0.087 3.913 7 C -0.544 4.544 8 H 0.098 0.902 9 C -0.198 4.198 10 N -0.580 5.580 11 Si 0.778 3.222 12 H -0.192 1.192 13 H -0.215 1.215 14 H -0.194 1.194 15 C -0.021 4.021 16 H 0.103 0.897 17 C -0.184 4.184 18 C -0.137 4.137 19 C -0.106 4.106 20 H 0.062 0.938 21 C -0.197 4.197 22 C -0.095 4.095 23 H 0.101 0.899 24 C -0.202 4.202 25 C -0.138 4.138 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.021 0.979 35 H -0.025 1.025 36 H 0.023 0.977 37 H 0.067 0.933 38 H 0.047 0.953 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.094 0.906 46 H 0.074 0.926 47 H 0.058 0.942 48 H 0.076 0.924 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.549 2.831 13.598 14.957 hybrid contribution 1.331 -0.210 -1.236 1.829 sum -4.217 2.621 12.362 13.322 Atomic orbital electron populations 1.21516 0.94603 1.01204 1.00318 1.21491 0.96903 0.95446 0.99551 1.21749 1.00075 0.95605 1.01941 1.21885 0.95352 0.89136 0.98019 1.62243 1.54306 1.02079 1.06867 1.19376 0.88735 0.91989 0.91157 1.21755 1.15006 1.26495 0.91159 0.90171 1.25820 0.95291 0.95465 1.03257 1.70102 1.22193 1.33054 1.32693 0.85678 0.78175 0.78598 0.79713 1.19219 1.21500 1.19426 1.21780 0.94397 0.96089 0.89813 0.89682 1.22155 0.98515 0.99857 0.97863 1.21482 1.00933 0.96224 0.95108 1.21151 0.95685 0.96087 0.97702 0.93775 1.21825 1.01969 1.01130 0.94790 1.21087 0.96048 0.97207 0.95135 0.89904 1.21852 1.00313 0.95776 1.02217 1.21591 1.00147 0.95003 0.97057 0.93447 0.92584 0.93688 0.90730 0.94033 0.92414 0.91719 0.91100 0.97937 1.02504 0.97706 0.93276 0.95259 0.93005 0.92001 0.90420 0.91547 0.91832 0.92616 0.90558 0.92598 0.94247 0.92368 0.94744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.04 8.57 71.98 0.62 -3.42 16 2 C -0.12 -4.33 2.42 -10.79 -0.03 -4.36 16 3 C -0.14 -4.13 9.19 71.98 0.66 -3.47 16 4 C 0.08 3.24 3.54 86.31 0.31 3.55 16 5 N -0.53 -22.50 3.71 -875.51 -3.25 -25.75 16 6 C 0.21 11.27 3.56 85.56 0.30 11.58 16 7 C -0.51 -28.17 7.17 25.60 0.18 -27.99 16 8 H 0.08 4.31 5.04 -2.91 -0.01 4.30 16 9 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 10 N -0.94 -57.52 13.29 21.45 0.28 -57.24 16 11 Si 0.95 44.93 29.54 68.60 2.03 46.96 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 13 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 14 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 15 C 0.09 3.09 2.18 44.92 0.10 3.19 16 16 H 0.09 2.65 7.94 -2.39 -0.02 2.63 16 17 C -0.14 -4.97 4.60 30.60 0.14 -4.82 16 18 C -0.10 -2.59 5.20 30.59 0.16 -2.43 16 19 C -0.09 -2.21 2.25 -10.79 -0.02 -2.24 16 20 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 21 C -0.14 -2.63 8.84 71.98 0.64 -2.00 16 22 C -0.08 -1.96 2.25 -10.81 -0.02 -1.98 16 23 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 24 C -0.14 -3.36 8.84 71.98 0.64 -2.72 16 25 C -0.10 -3.45 4.34 30.58 0.13 -3.31 16 26 H 0.05 1.83 7.19 -2.39 -0.02 1.81 16 27 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 28 H 0.04 1.40 8.14 -2.39 -0.02 1.39 16 29 H 0.07 3.45 4.75 -2.39 -0.01 3.44 16 30 H 0.04 1.28 8.14 -2.38 -0.02 1.27 16 31 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.07 2.33 7.78 -2.39 -0.02 2.31 16 34 H 0.00 0.10 7.17 -2.39 -0.02 0.08 16 35 H -0.04 -2.54 7.00 -2.39 -0.02 -2.56 16 36 H 0.01 0.29 5.61 -2.39 -0.01 0.27 16 37 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 38 H 0.03 1.22 6.83 -2.39 -0.02 1.20 16 39 H 0.05 1.77 7.04 -2.39 -0.02 1.75 16 40 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 43 H 0.06 1.10 6.43 -2.38 -0.02 1.09 16 44 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.08 1.41 6.43 -2.39 -0.02 1.40 16 46 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.06 2.04 8.14 -2.39 -0.02 2.03 16 49 H 0.03 1.44 6.08 -2.39 -0.01 1.42 16 Total: -1.00 -62.40 353.87 4.20 -58.20 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.87 Total: 17.89 kcal Atomic # 6 Polarization: -44.32 SS G_CDS: 4.26 Total: -40.05 kcal Atomic # 7 Polarization: -80.03 SS G_CDS: -2.96 Total: -82.99 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -62.40 4.20 -58.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251949009.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.659 kcal (2) G-P(sol) polarization free energy of solvation -62.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds