Wall clock time and date at job start Mon Mar 30 2020 07:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47207 * 2 1 4 4 H 1.08994 * 110.53585 * 52.38314 * 3 2 1 5 5 C 1.54895 * 110.48450 * 289.77679 * 3 2 1 6 6 C 1.54883 * 102.74630 * 203.38111 * 5 3 2 7 7 C 1.54266 * 104.20144 * 37.93866 * 6 5 3 8 8 H 1.08993 * 110.06942 * 95.69702 * 7 6 5 9 9 N 1.46901 * 110.03322 * 217.10693 * 7 6 5 10 10 C 1.46894 * 111.00228 * 282.07388 * 9 7 6 11 11 C 1.52998 * 109.47205 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47469 * 59.99888 * 11 10 9 13 13 C 1.53000 * 109.47093 * 299.99839 * 11 10 9 14 14 C 1.53004 * 109.47334 * 180.02562 * 11 10 9 15 15 C 1.50698 * 109.47210 * 179.97438 * 14 11 10 16 16 H 1.07998 * 119.99730 * 359.97438 * 15 14 11 17 17 C 1.37871 * 119.99771 * 179.97438 * 15 14 11 18 18 N 1.31522 * 120.00414 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99918 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.47001 * 60.00078 * 19 17 15 21 21 H 1.48494 * 109.47131 * 299.99707 * 19 17 15 22 22 H 1.48501 * 109.46922 * 180.02562 * 19 17 15 23 23 C 1.53878 * 106.59402 * 336.39285 * 7 6 5 24 24 H 1.08998 * 110.03006 * 119.28793 * 23 7 6 25 25 C 1.53002 * 110.02911 * 240.71287 * 23 7 6 26 26 H 1.09002 * 109.47414 * 300.00379 * 1 2 3 27 27 H 1.09009 * 109.47048 * 60.00350 * 1 2 3 28 28 H 1.08995 * 109.47332 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47183 * 240.00087 * 2 1 3 30 30 H 1.08999 * 109.47064 * 119.99636 * 2 1 3 31 31 H 1.09007 * 110.75118 * 321.68993 * 5 3 2 32 32 H 1.09004 * 110.75909 * 84.87619 * 5 3 2 33 33 H 1.09005 * 110.48699 * 279.26034 * 6 5 3 34 34 H 1.09006 * 110.48861 * 156.62162 * 6 5 3 35 35 H 1.00906 * 110.99818 * 158.12010 * 9 7 6 36 36 H 1.09002 * 109.46983 * 60.00277 * 10 9 7 37 37 H 1.08997 * 109.47325 * 300.00388 * 10 9 7 38 38 H 1.08995 * 109.47193 * 180.02562 * 12 11 10 39 39 H 1.09002 * 109.47048 * 300.00558 * 12 11 10 40 40 H 1.09007 * 109.46620 * 59.99999 * 12 11 10 41 41 H 1.09002 * 109.47332 * 300.00153 * 13 11 10 42 42 H 1.09004 * 109.47184 * 60.00014 * 13 11 10 43 43 H 1.08995 * 109.47404 * 180.02562 * 13 11 10 44 44 H 1.09000 * 109.47381 * 59.99231 * 14 11 10 45 45 H 1.09007 * 109.46849 * 300.00058 * 14 11 10 46 46 H 0.97001 * 119.99380 * 359.97438 * 18 17 15 47 47 H 1.08997 * 109.47144 * 53.60725 * 25 23 7 48 48 H 1.08998 * 109.46980 * 173.60546 * 25 23 7 49 49 H 1.09004 * 109.47005 * 293.60313 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5801 2.0107 0.8085 5 6 1.7578 2.1173 -1.3654 6 6 2.8152 3.2480 -1.4129 7 6 4.0702 2.6197 -0.7724 8 1 4.7305 2.2303 -1.5472 9 7 4.7785 3.6219 0.0350 10 6 5.5582 4.5292 -0.8174 11 6 6.2805 5.5559 0.0573 12 6 7.2194 4.8318 1.0242 13 6 5.2517 6.3619 0.8529 14 6 7.0921 6.5014 -0.8306 15 6 7.8030 7.5131 0.0309 16 1 7.6871 7.4848 1.1043 17 6 8.6013 8.4747 -0.5513 18 7 8.7428 8.5088 -1.8584 19 14 9.4820 9.7292 0.5166 20 1 10.3930 9.0272 1.4558 21 1 8.4827 10.5113 1.2877 22 1 10.2698 10.6467 -0.3453 23 6 3.5772 1.4717 0.1259 24 1 3.9977 0.5251 -0.2135 25 6 3.9791 1.7335 1.5788 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.9090 1.4124 -2.1831 32 1 0.7482 2.5272 -1.3925 33 1 2.4806 4.1079 -0.8325 34 1 3.0177 3.5380 -2.4440 35 1 5.3666 3.1799 0.7256 36 1 4.8893 5.0449 -1.5065 37 1 6.2914 3.9552 -1.3839 38 1 7.7336 5.5633 1.6476 39 1 6.6408 4.1585 1.6567 40 1 7.9523 4.2577 0.4573 41 1 4.5827 6.8778 0.1641 42 1 4.6731 5.6886 1.4854 43 1 5.7661 7.0936 1.4757 44 1 6.4229 7.0173 -1.5192 45 1 7.8251 5.9275 -1.3978 46 1 8.2858 7.8571 -2.4128 47 1 3.6292 2.7208 1.8803 48 1 3.5300 0.9768 2.2220 49 1 5.0645 1.6895 1.6691 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253029675.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:57 Heat of formation + Delta-G solvation = -45.663694 kcal Electronic energy + Delta-G solvation = -21610.721564 eV Core-core repulsion = 18763.703947 eV Total energy + Delta-G solvation = -2847.017617 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.55404 -37.26893 -34.49213 -32.65813 -31.51335 -31.08391 -26.96728 -26.43445 -26.31264 -25.31371 -24.48643 -22.58335 -22.27631 -20.23989 -18.93770 -18.15650 -16.36789 -15.67476 -15.61888 -15.28489 -14.69114 -14.20438 -13.81804 -13.69266 -13.51829 -13.29678 -13.11861 -12.64656 -12.50091 -12.22945 -11.86098 -11.81266 -11.66406 -11.39683 -11.29163 -11.05163 -10.90483 -10.85909 -10.70012 -10.63763 -10.56843 -10.52935 -10.51870 -10.37700 -10.08090 -9.88353 -9.74426 -9.22539 -8.35961 -8.25147 -8.03809 -6.26906 -3.94348 3.47197 3.49174 3.67453 4.42433 4.43138 4.52416 4.60808 4.70140 5.00546 5.15086 5.18307 5.32514 5.41672 5.41930 5.47972 5.48858 5.54232 5.64413 5.68227 5.70611 5.77574 5.79405 5.83251 5.86652 5.93277 6.00883 6.05542 6.14731 6.16898 6.20769 6.24754 6.29592 6.42915 6.44640 6.48970 6.61889 6.74615 6.79396 7.14993 7.18016 7.23739 7.44438 7.47223 7.62209 7.75539 8.33266 8.55796 8.97995 9.76277 11.13037 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.044372 B = 0.003507 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.873257 B = 7981.917155 C = 8218.821782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.083 4.083 4 H 0.077 0.923 5 C -0.118 4.118 6 C -0.114 4.114 7 C 0.084 3.916 8 H 0.036 0.964 9 N -0.680 5.680 10 C 0.068 3.932 11 C -0.051 4.051 12 C -0.128 4.128 13 C -0.114 4.114 14 C 0.021 3.979 15 C -0.587 4.587 16 H 0.052 0.948 17 C 0.011 3.989 18 N -0.918 5.918 19 Si 1.065 2.935 20 H -0.289 1.289 21 H -0.289 1.289 22 H -0.284 1.284 23 C -0.090 4.090 24 H 0.066 0.934 25 C -0.143 4.143 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.341 0.659 36 H 0.064 0.936 37 H 0.019 0.981 38 H 0.065 0.935 39 H 0.033 0.967 40 H 0.038 0.962 41 H 0.037 0.963 42 H 0.043 0.957 43 H 0.054 0.946 44 H 0.005 0.995 45 H 0.002 0.998 46 H 0.267 0.733 47 H 0.074 0.926 48 H 0.048 0.952 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.951 -16.499 4.073 21.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.102 4.102 4 H 0.095 0.905 5 C -0.156 4.156 6 C -0.152 4.152 7 C -0.026 4.026 8 H 0.054 0.946 9 N -0.314 5.314 10 C -0.061 4.061 11 C -0.052 4.052 12 C -0.185 4.185 13 C -0.171 4.171 14 C -0.017 4.017 15 C -0.625 4.625 16 H 0.071 0.929 17 C -0.192 4.192 18 N -0.555 5.555 19 Si 0.894 3.106 20 H -0.216 1.216 21 H -0.215 1.215 22 H -0.209 1.209 23 C -0.109 4.109 24 H 0.084 0.916 25 C -0.201 4.201 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.163 0.837 36 H 0.082 0.918 37 H 0.037 0.963 38 H 0.084 0.916 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.023 0.977 45 H 0.020 0.980 46 H 0.078 0.922 47 H 0.093 0.907 48 H 0.067 0.933 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.450 -14.773 4.072 20.389 hybrid contribution -0.193 -1.917 -0.383 1.965 sum -13.643 -16.690 3.689 21.870 Atomic orbital electron populations 1.21777 0.96028 1.01217 1.01885 1.21575 0.95725 0.96452 1.01643 1.22043 0.94688 0.95484 0.97969 0.90483 1.22528 0.98754 0.97527 0.96781 1.22401 0.94348 0.98370 1.00066 1.22122 0.95240 0.91249 0.93995 0.94648 1.60906 1.33773 1.20270 1.16466 1.22126 0.94708 0.94195 0.95071 1.20473 0.94746 0.94331 0.95601 1.21755 0.98365 0.99455 0.98916 1.21575 0.97459 0.98799 0.99268 1.19244 0.93962 0.93735 0.94722 1.22024 1.30842 1.15312 0.94309 0.92938 1.25783 0.96494 0.99182 0.97730 1.70780 1.42865 1.37434 1.04397 0.83595 0.76223 0.76000 0.74784 1.21589 1.21531 1.20945 1.21878 0.95471 0.97509 0.95993 0.91565 1.21782 1.00582 1.02558 0.95169 0.92818 0.92652 0.93140 0.92200 0.92236 0.91942 0.91785 0.90314 0.92396 0.83703 0.91784 0.96309 0.91625 0.94763 0.94309 0.94368 0.93774 0.92677 0.97705 0.97988 0.92235 0.90675 0.93290 0.93129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.79 37.16 0.36 -0.75 16 2 C -0.12 -0.95 5.28 -26.73 -0.14 -1.09 16 3 C -0.08 -0.79 2.39 -88.96 -0.21 -1.00 16 4 H 0.08 0.78 7.85 -51.93 -0.41 0.37 16 5 C -0.12 -1.16 5.67 -24.74 -0.14 -1.30 16 6 C -0.11 -1.38 5.99 -25.08 -0.15 -1.53 16 7 C 0.08 1.07 3.21 -66.59 -0.21 0.85 16 8 H 0.04 0.48 7.97 -51.93 -0.41 0.07 16 9 N -0.68 -9.89 4.46 -105.55 -0.47 -10.36 16 10 C 0.07 1.20 4.47 -3.83 -0.02 1.18 16 11 C -0.05 -1.04 0.60 -154.51 -0.09 -1.13 16 12 C -0.13 -2.44 7.89 37.16 0.29 -2.14 16 13 C -0.11 -2.26 8.06 37.16 0.30 -1.96 16 14 C 0.02 0.53 3.35 -27.88 -0.09 0.44 16 15 C -0.59 -16.39 7.65 -34.44 -0.26 -16.66 16 16 H 0.05 1.44 5.68 -52.49 -0.30 1.14 16 17 C 0.01 0.32 5.46 -17.82 -0.10 0.23 16 18 N -0.92 -28.47 13.65 55.43 0.76 -27.72 16 19 Si 1.07 25.61 29.90 -169.99 -5.08 20.52 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 C -0.09 -0.95 3.07 -89.50 -0.27 -1.22 16 24 H 0.07 0.68 7.84 -51.93 -0.41 0.27 16 25 C -0.14 -1.50 7.77 37.16 0.29 -1.21 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.41 7.55 -51.92 -0.39 0.01 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.48 8.02 -51.93 -0.42 0.07 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.59 7.97 -51.93 -0.41 0.17 16 32 H 0.06 0.59 8.05 -51.93 -0.42 0.17 16 33 H 0.08 1.06 8.05 -51.93 -0.42 0.64 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.34 4.81 4.18 -39.29 -0.16 4.65 16 36 H 0.06 1.18 7.77 -51.93 -0.40 0.77 16 37 H 0.02 0.34 8.09 -51.93 -0.42 -0.08 16 38 H 0.06 1.37 6.62 -51.93 -0.34 1.02 16 39 H 0.03 0.55 6.57 -51.93 -0.34 0.21 16 40 H 0.04 0.74 8.14 -51.92 -0.42 0.31 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.04 0.78 7.60 -51.93 -0.39 0.39 16 43 H 0.05 1.18 6.61 -51.93 -0.34 0.83 16 44 H 0.00 0.13 8.01 -51.93 -0.42 -0.29 16 45 H 0.00 0.05 8.01 -51.92 -0.42 -0.36 16 46 H 0.27 8.29 7.22 -40.82 -0.29 8.00 16 47 H 0.07 0.88 7.49 -51.93 -0.39 0.49 16 48 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.05 0.53 7.03 -51.93 -0.36 0.17 16 LS Contribution 361.20 15.07 5.44 5.44 Total: -1.00 -29.28 361.20 -9.44 -38.72 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -9.63 Total: 0.69 kcal Atomic # 6 Polarization: -26.84 SS G_CDS: -0.45 Total: -27.29 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.29 Total: -38.08 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -5.08 Total: 20.52 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.28 -9.44 -38.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253029675.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.945 kcal (2) G-P(sol) polarization free energy of solvation -29.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds