Wall clock time and date at job start Mon Mar 30 2020 07:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47207 * 2 1 4 4 H 1.08994 * 110.53585 * 52.38314 * 3 2 1 5 5 C 1.54895 * 110.48450 * 289.77679 * 3 2 1 6 6 C 1.54883 * 102.74630 * 203.38111 * 5 3 2 7 7 C 1.54266 * 104.20144 * 37.93866 * 6 5 3 8 8 H 1.08993 * 110.06942 * 95.69702 * 7 6 5 9 9 N 1.46901 * 110.03322 * 217.10693 * 7 6 5 10 10 C 1.46894 * 111.00228 * 282.07388 * 9 7 6 11 11 C 1.52998 * 109.47205 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47469 * 59.99888 * 11 10 9 13 13 C 1.53000 * 109.47093 * 299.99839 * 11 10 9 14 14 C 1.53004 * 109.47334 * 180.02562 * 11 10 9 15 15 C 1.50698 * 109.47210 * 179.97438 * 14 11 10 16 16 H 1.07998 * 119.99730 * 359.97438 * 15 14 11 17 17 C 1.37871 * 119.99771 * 179.97438 * 15 14 11 18 18 N 1.31522 * 120.00414 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99918 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.47001 * 60.00078 * 19 17 15 21 21 H 1.48494 * 109.47131 * 299.99707 * 19 17 15 22 22 H 1.48501 * 109.46922 * 180.02562 * 19 17 15 23 23 C 1.53878 * 106.59402 * 336.39285 * 7 6 5 24 24 H 1.08998 * 110.03006 * 119.28793 * 23 7 6 25 25 C 1.53002 * 110.02911 * 240.71287 * 23 7 6 26 26 H 1.09002 * 109.47414 * 300.00379 * 1 2 3 27 27 H 1.09009 * 109.47048 * 60.00350 * 1 2 3 28 28 H 1.08995 * 109.47332 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47183 * 240.00087 * 2 1 3 30 30 H 1.08999 * 109.47064 * 119.99636 * 2 1 3 31 31 H 1.09007 * 110.75118 * 321.68993 * 5 3 2 32 32 H 1.09004 * 110.75909 * 84.87619 * 5 3 2 33 33 H 1.09005 * 110.48699 * 279.26034 * 6 5 3 34 34 H 1.09006 * 110.48861 * 156.62162 * 6 5 3 35 35 H 1.00906 * 110.99818 * 158.12010 * 9 7 6 36 36 H 1.09002 * 109.46983 * 60.00277 * 10 9 7 37 37 H 1.08997 * 109.47325 * 300.00388 * 10 9 7 38 38 H 1.08995 * 109.47193 * 180.02562 * 12 11 10 39 39 H 1.09002 * 109.47048 * 300.00558 * 12 11 10 40 40 H 1.09007 * 109.46620 * 59.99999 * 12 11 10 41 41 H 1.09002 * 109.47332 * 300.00153 * 13 11 10 42 42 H 1.09004 * 109.47184 * 60.00014 * 13 11 10 43 43 H 1.08995 * 109.47404 * 180.02562 * 13 11 10 44 44 H 1.09000 * 109.47381 * 59.99231 * 14 11 10 45 45 H 1.09007 * 109.46849 * 300.00058 * 14 11 10 46 46 H 0.97001 * 119.99380 * 359.97438 * 18 17 15 47 47 H 1.08997 * 109.47144 * 53.60725 * 25 23 7 48 48 H 1.08998 * 109.46980 * 173.60546 * 25 23 7 49 49 H 1.09004 * 109.47005 * 293.60313 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5801 2.0107 0.8085 5 6 1.7578 2.1173 -1.3654 6 6 2.8152 3.2480 -1.4129 7 6 4.0702 2.6197 -0.7724 8 1 4.7305 2.2303 -1.5472 9 7 4.7785 3.6219 0.0350 10 6 5.5582 4.5292 -0.8174 11 6 6.2805 5.5559 0.0573 12 6 7.2194 4.8318 1.0242 13 6 5.2517 6.3619 0.8529 14 6 7.0921 6.5014 -0.8306 15 6 7.8030 7.5131 0.0309 16 1 7.6871 7.4848 1.1043 17 6 8.6013 8.4747 -0.5513 18 7 8.7428 8.5088 -1.8584 19 14 9.4820 9.7292 0.5166 20 1 10.3930 9.0272 1.4558 21 1 8.4827 10.5113 1.2877 22 1 10.2698 10.6467 -0.3453 23 6 3.5772 1.4717 0.1259 24 1 3.9977 0.5251 -0.2135 25 6 3.9791 1.7335 1.5788 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.9090 1.4124 -2.1831 32 1 0.7482 2.5272 -1.3925 33 1 2.4806 4.1079 -0.8325 34 1 3.0177 3.5380 -2.4440 35 1 5.3666 3.1799 0.7256 36 1 4.8893 5.0449 -1.5065 37 1 6.2914 3.9552 -1.3839 38 1 7.7336 5.5633 1.6476 39 1 6.6408 4.1585 1.6567 40 1 7.9523 4.2577 0.4573 41 1 4.5827 6.8778 0.1641 42 1 4.6731 5.6886 1.4854 43 1 5.7661 7.0936 1.4757 44 1 6.4229 7.0173 -1.5192 45 1 7.8251 5.9275 -1.3978 46 1 8.2858 7.8571 -2.4128 47 1 3.6292 2.7208 1.8803 48 1 3.5300 0.9768 2.2220 49 1 5.0645 1.6895 1.6691 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253029675.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:56 Heat of formation + Delta-G solvation = -59.868357 kcal Electronic energy + Delta-G solvation = -21611.337525 eV Core-core repulsion = 18763.703947 eV Total energy + Delta-G solvation = -2847.633577 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.55666 -38.79651 -35.77012 -34.45234 -32.50734 -32.12500 -28.66661 -27.98910 -27.74154 -26.36216 -25.86930 -24.29391 -23.20160 -21.04739 -19.98039 -19.84270 -18.45101 -16.94014 -16.66833 -16.24443 -15.79386 -15.57989 -15.45180 -15.18943 -14.83041 -14.33041 -14.24179 -13.99276 -13.63383 -13.51991 -13.27529 -13.07827 -12.90764 -12.66161 -12.58846 -12.55285 -12.34066 -12.23295 -11.98342 -11.95870 -11.75406 -11.71372 -11.52649 -11.45330 -11.37039 -11.22355 -11.14718 -11.03064 -10.49384 -10.41615 -9.29109 -8.60885 -6.28774 1.52465 1.61179 1.79312 2.59380 3.22297 3.25857 3.58757 3.67196 3.90347 4.04522 4.11728 4.25668 4.33465 4.35873 4.41632 4.54100 4.57092 4.59926 4.63853 4.69334 4.73201 4.75300 4.81662 4.87422 4.96741 5.01972 5.03427 5.05020 5.10022 5.10168 5.17134 5.21606 5.25511 5.30808 5.35796 5.37943 5.39677 5.43763 5.48875 5.52344 5.59298 5.66499 5.71443 6.07448 6.20757 6.27462 6.55507 6.66436 7.51472 8.79167 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.044372 B = 0.003507 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.873257 B = 7981.917155 C = 8218.821782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.078 4.078 4 H 0.073 0.927 5 C -0.111 4.111 6 C -0.115 4.115 7 C 0.080 3.920 8 H 0.027 0.973 9 N -0.672 5.672 10 C 0.082 3.918 11 C -0.049 4.049 12 C -0.120 4.120 13 C -0.103 4.103 14 C 0.025 3.975 15 C -0.589 4.589 16 H 0.059 0.941 17 C -0.047 4.047 18 N -0.947 5.947 19 Si 1.113 2.887 20 H -0.269 1.269 21 H -0.270 1.270 22 H -0.288 1.288 23 C -0.085 4.085 24 H 0.074 0.926 25 C -0.141 4.141 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.346 0.654 36 H 0.052 0.948 37 H 0.010 0.990 38 H 0.047 0.953 39 H 0.069 0.931 40 H 0.033 0.967 41 H 0.027 0.973 42 H 0.070 0.930 43 H 0.037 0.963 44 H -0.023 1.023 45 H -0.023 1.023 46 H 0.252 0.748 47 H 0.062 0.938 48 H 0.064 0.936 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.936 -17.967 5.957 24.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.096 4.096 4 H 0.091 0.909 5 C -0.149 4.149 6 C -0.153 4.153 7 C -0.030 4.030 8 H 0.045 0.955 9 N -0.307 5.307 10 C -0.048 4.048 11 C -0.049 4.049 12 C -0.178 4.178 13 C -0.161 4.161 14 C -0.013 4.013 15 C -0.627 4.627 16 H 0.077 0.923 17 C -0.243 4.243 18 N -0.585 5.585 19 Si 0.935 3.065 20 H -0.194 1.194 21 H -0.195 1.195 22 H -0.214 1.214 23 C -0.104 4.104 24 H 0.093 0.907 25 C -0.199 4.199 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.169 0.831 36 H 0.071 0.929 37 H 0.028 0.972 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.052 0.948 41 H 0.046 0.954 42 H 0.089 0.911 43 H 0.056 0.944 44 H -0.004 1.004 45 H -0.005 1.005 46 H 0.061 0.939 47 H 0.081 0.919 48 H 0.083 0.917 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.457 -16.270 5.969 22.569 hybrid contribution 0.073 -1.500 -1.006 1.808 sum -14.383 -17.770 4.963 23.394 Atomic orbital electron populations 1.21771 0.95442 1.01790 1.01858 1.21541 0.96203 0.95259 1.02015 1.21999 0.93801 0.96444 0.97396 0.90892 1.22499 0.98293 0.96720 0.97406 1.22381 0.94980 0.98767 0.99216 1.22234 0.94989 0.91566 0.94181 0.95466 1.60876 1.32953 1.20720 1.16124 1.21811 0.94296 0.94026 0.94625 1.20377 0.94844 0.94257 0.95449 1.21667 0.98214 0.99334 0.98558 1.21470 0.97021 0.98682 0.98896 1.19175 0.93396 0.94066 0.94648 1.22391 1.30157 1.15288 0.94883 0.92280 1.27349 0.97390 1.01477 0.98043 1.70921 1.44240 1.37865 1.05495 0.82982 0.75890 0.73993 0.73621 1.19368 1.19478 1.21381 1.21865 0.96229 0.96651 0.95640 0.90711 1.21749 1.00623 1.02385 0.95123 0.92829 0.92730 0.92309 0.91976 0.91725 0.91244 0.91004 0.91753 0.93239 0.83129 0.92941 0.97214 0.93397 0.91246 0.94758 0.95411 0.91110 0.94351 1.00425 1.00475 0.93905 0.91876 0.91717 0.93175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.79 71.98 0.70 -1.14 16 2 C -0.11 -1.52 5.28 30.60 0.16 -1.36 16 3 C -0.08 -1.29 2.39 -9.72 -0.02 -1.32 16 4 H 0.07 1.31 7.85 -2.39 -0.02 1.29 16 5 C -0.11 -2.00 5.67 31.88 0.18 -1.81 16 6 C -0.12 -2.71 5.99 31.67 0.19 -2.53 16 7 C 0.08 1.94 3.21 45.64 0.15 2.08 16 8 H 0.03 0.72 7.97 -2.39 -0.02 0.70 16 9 N -0.67 -18.74 4.46 -487.85 -2.18 -20.91 16 10 C 0.08 2.91 4.47 86.30 0.39 3.29 16 11 C -0.05 -1.99 0.60 -52.18 -0.03 -2.02 16 12 C -0.12 -4.47 7.89 71.98 0.57 -3.90 16 13 C -0.10 -4.04 8.06 71.98 0.58 -3.46 16 14 C 0.02 1.30 3.35 29.85 0.10 1.40 16 15 C -0.59 -33.41 7.65 25.60 0.20 -33.21 16 16 H 0.06 3.23 5.68 -2.91 -0.02 3.21 16 17 C -0.05 -2.74 5.46 84.65 0.46 -2.28 16 18 N -0.95 -60.40 13.65 21.45 0.29 -60.11 16 19 Si 1.11 51.28 29.90 68.60 2.05 53.33 16 20 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 21 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 22 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 23 C -0.09 -1.60 3.07 -10.07 -0.03 -1.63 16 24 H 0.07 1.32 7.84 -2.39 -0.02 1.30 16 25 C -0.14 -2.57 7.77 71.98 0.56 -2.01 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.64 16 27 H 0.05 0.67 7.55 -2.38 -0.02 0.65 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.83 8.02 -2.38 -0.02 0.81 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 1.16 7.97 -2.38 -0.02 1.15 16 32 H 0.07 1.19 8.05 -2.39 -0.02 1.17 16 33 H 0.06 1.70 8.05 -2.38 -0.02 1.69 16 34 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.35 9.03 4.18 -89.69 -0.38 8.66 16 36 H 0.05 1.98 7.77 -2.39 -0.02 1.96 16 37 H 0.01 0.36 8.09 -2.39 -0.02 0.34 16 38 H 0.05 1.94 6.62 -2.39 -0.02 1.92 16 39 H 0.07 2.07 6.57 -2.39 -0.02 2.06 16 40 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.07 2.37 7.60 -2.39 -0.02 2.36 16 43 H 0.04 1.60 6.61 -2.39 -0.02 1.59 16 44 H -0.02 -1.30 8.01 -2.39 -0.02 -1.32 16 45 H -0.02 -1.32 8.01 -2.38 -0.02 -1.34 16 46 H 0.25 16.37 7.22 -92.71 -0.67 15.70 16 47 H 0.06 1.32 7.49 -2.39 -0.02 1.30 16 48 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.05 0.91 7.03 -2.38 -0.02 0.90 16 Total: -1.00 -64.07 361.20 4.91 -59.16 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.60 Total: 18.44 kcal Atomic # 6 Polarization: -54.04 SS G_CDS: 4.15 Total: -49.89 kcal Atomic # 7 Polarization: -79.14 SS G_CDS: -1.89 Total: -81.03 kcal Atomic # 14 Polarization: 51.28 SS G_CDS: 2.05 Total: 53.33 kcal Total: -64.07 4.91 -59.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253029675.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.713 kcal (2) G-P(sol) polarization free energy of solvation -64.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds