Wall clock time and date at job start Mon Mar 30 2020 06:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46774 * 2 1 4 4 C 1.52990 * 109.47344 * 240.00042 * 2 1 3 5 5 C 1.53001 * 109.47018 * 119.99855 * 2 1 3 6 6 C 1.52995 * 109.46849 * 65.82758 * 5 2 1 7 7 H 1.08995 * 110.78583 * 49.38121 * 6 5 2 8 8 C 1.54600 * 110.72824 * 286.12697 * 6 5 2 9 9 C 1.53988 * 105.13884 * 219.68745 * 8 6 5 10 10 N 1.48059 * 107.14705 * 358.91622 * 9 8 6 11 11 C 1.46904 * 111.16471 * 145.63303 * 10 9 8 12 12 C 1.53001 * 109.46947 * 52.60690 * 11 10 9 13 13 C 1.53000 * 109.47052 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47390 * 179.97438 * 13 12 11 15 15 C 1.50694 * 109.47316 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00218 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99864 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99983 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00480 * 359.97438 * 17 15 14 20 20 H 1.48509 * 109.47001 * 90.00115 * 19 17 15 21 21 H 1.48498 * 109.47572 * 210.00388 * 19 17 15 22 22 H 1.48506 * 109.46831 * 330.01080 * 19 17 15 23 23 C 1.48537 * 105.73696 * 25.07881 * 10 9 8 24 24 H 1.09001 * 109.47157 * 290.19899 * 1 2 3 25 25 H 1.09000 * 109.46905 * 50.20821 * 1 2 3 26 26 H 1.08999 * 109.46753 * 170.20266 * 1 2 3 27 27 H 1.08998 * 109.46918 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47227 * 300.00065 * 3 2 1 29 29 H 1.09006 * 109.47021 * 59.99639 * 3 2 1 30 30 H 1.08998 * 109.47400 * 299.99900 * 4 2 1 31 31 H 1.09004 * 109.47598 * 59.99830 * 4 2 1 32 32 H 1.09007 * 109.47323 * 179.97438 * 4 2 1 33 33 H 1.08998 * 109.47337 * 305.82864 * 5 2 1 34 34 H 1.09000 * 109.47135 * 185.82742 * 5 2 1 35 35 H 1.09001 * 110.30046 * 338.60413 * 8 6 5 36 36 H 1.08999 * 110.30547 * 100.67116 * 8 6 5 37 37 H 1.09010 * 109.91597 * 118.12900 * 9 8 6 38 38 H 1.09001 * 109.91632 * 239.22283 * 9 8 6 39 39 H 1.08994 * 109.47181 * 172.60477 * 11 10 9 40 40 H 1.09003 * 109.46791 * 292.60354 * 11 10 9 41 41 H 1.09006 * 109.46662 * 299.99752 * 12 11 10 42 42 H 1.08991 * 109.47260 * 60.00208 * 12 11 10 43 43 H 1.09006 * 109.46985 * 300.00066 * 13 12 11 44 44 H 1.09003 * 109.46988 * 59.99479 * 13 12 11 45 45 H 1.09009 * 109.46709 * 300.00113 * 14 13 12 46 46 H 1.08999 * 109.47053 * 59.99490 * 14 13 12 47 47 H 0.97007 * 120.00325 * 179.97438 * 18 17 15 48 48 H 1.08994 * 110.67046 * 202.50190 * 23 10 9 49 49 H 1.09007 * 110.66585 * 79.54241 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 2.0400 -0.7212 1.2493 6 6 1.6531 -2.1997 1.1782 7 1 1.9268 -2.6252 0.2127 8 6 0.1421 -2.3835 1.4485 9 6 0.0399 -3.6528 2.3144 10 7 1.4156 -4.1687 2.4967 11 6 1.5822 -4.7779 3.8231 12 6 0.4817 -5.8166 4.0490 13 6 0.6548 -6.4506 5.4307 14 6 -0.4460 -7.4888 5.6570 15 6 -0.2759 -8.1128 7.0180 16 1 0.5364 -7.8005 7.6576 17 6 -1.1566 -9.0832 7.4464 18 7 -1.0079 -9.6282 8.6341 19 14 -2.5613 -9.6239 6.3401 20 1 -2.1141 -10.7568 5.4903 21 1 -3.7112 -10.0552 7.1749 22 1 -2.9750 -8.4897 5.4753 23 6 2.3110 -2.9948 2.3339 24 1 -0.3633 0.3548 0.9645 25 1 -0.3633 0.6577 -0.7896 26 1 -0.3633 -1.0127 -0.1749 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6765 1.9564 0.8900 30 1 1.6768 -1.7488 -1.2492 31 1 1.6768 -0.2074 -2.1392 32 1 3.1301 -0.7208 -1.2494 33 1 1.5940 -0.2712 2.1362 34 1 3.1250 -0.6318 1.3030 35 1 -0.2527 -1.5235 1.9896 36 1 -0.3963 -2.5193 0.5105 37 1 -0.3930 -3.4068 3.2842 38 1 -0.5768 -4.3972 1.8108 39 1 2.5567 -5.2628 3.8804 40 1 1.5153 -4.0051 4.5888 41 1 -0.4928 -5.3316 3.9917 42 1 0.5487 -6.5893 3.2833 43 1 1.6294 -6.9354 5.4884 44 1 0.5877 -5.6775 6.1962 45 1 -1.4204 -7.0035 5.5993 46 1 -0.3793 -8.2618 4.8914 47 1 -1.6278 -10.3107 8.9357 48 1 3.3164 -3.3131 2.0584 49 1 2.3341 -2.3990 3.2464 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307768567.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:48 Heat of formation + Delta-G solvation = -35.273859 kcal Electronic energy + Delta-G solvation = -20729.967978 eV Core-core repulsion = 17883.400899 eV Total energy + Delta-G solvation = -2846.567080 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.86620 -37.59823 -34.94681 -32.86087 -31.47874 -29.78290 -28.66457 -27.63399 -27.46742 -25.83738 -24.19806 -22.14908 -20.77092 -20.19410 -19.63532 -18.88374 -16.60742 -16.52016 -15.65737 -15.20543 -14.86961 -14.38737 -14.25794 -14.20475 -13.97410 -13.36528 -13.12343 -12.82992 -12.78900 -12.58302 -12.16229 -12.08629 -11.98893 -11.89329 -11.65640 -11.52854 -11.41514 -11.18908 -11.04670 -10.79238 -10.73187 -10.67506 -10.46987 -10.39760 -10.38993 -9.84697 -9.63801 -9.43673 -9.11697 -8.49796 -8.33780 -6.00493 -3.97924 3.33848 3.40688 3.45374 3.99859 4.30342 4.47073 4.48635 4.49060 4.66739 4.69937 4.97706 5.13660 5.21402 5.24131 5.27303 5.33092 5.34842 5.40300 5.41677 5.48565 5.52438 5.53273 5.57262 5.63100 5.66400 5.71815 5.74387 5.82016 5.85739 5.94162 5.97708 6.00171 6.05868 6.08472 6.14934 6.20452 6.26288 6.40517 6.69524 6.79650 6.93045 6.97990 7.17848 7.37691 7.50655 7.84817 8.58970 9.04835 9.62568 11.13114 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.044624 B = 0.002746 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.321010 B =10192.873660 C =10469.335869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.068 4.068 3 C -0.141 4.141 4 C -0.145 4.145 5 C -0.100 4.100 6 C -0.093 4.093 7 H 0.088 0.912 8 C -0.127 4.127 9 C 0.032 3.968 10 N -0.519 5.519 11 C 0.048 3.952 12 C -0.120 4.120 13 C -0.101 4.101 14 C -0.014 4.014 15 C -0.519 4.519 16 H 0.070 0.930 17 C 0.064 3.936 18 N -0.906 5.906 19 Si 0.881 3.119 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.266 1.266 23 C 0.037 3.963 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.046 0.954 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.032 0.968 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.013 0.987 46 H 0.011 0.989 47 H 0.262 0.738 48 H 0.077 0.923 49 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.291 21.457 -19.881 29.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.068 4.068 3 C -0.199 4.199 4 C -0.202 4.202 5 C -0.138 4.138 6 C -0.112 4.112 7 H 0.106 0.894 8 C -0.164 4.164 9 C -0.096 4.096 10 N -0.242 5.242 11 C -0.080 4.080 12 C -0.158 4.158 13 C -0.139 4.139 14 C -0.051 4.051 15 C -0.557 4.557 16 H 0.089 0.911 17 C -0.137 4.137 18 N -0.545 5.545 19 Si 0.709 3.291 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.190 1.190 23 C -0.091 4.091 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.050 0.950 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.032 0.968 46 H 0.029 0.971 47 H 0.072 0.928 48 H 0.096 0.904 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.330 20.908 -20.121 29.503 hybrid contribution -0.943 0.190 0.290 1.005 sum 4.387 21.098 -19.831 29.286 Atomic orbital electron populations 1.22221 0.94688 1.02616 1.01379 1.20517 0.95786 0.95119 0.95405 1.21882 1.00843 0.95585 1.01569 1.21970 1.00896 1.00596 0.96731 1.21669 1.00721 0.94192 0.97220 1.22202 0.94955 0.94632 0.99368 0.89430 1.22754 0.96479 0.97364 0.99835 1.22928 0.91529 0.96089 0.99021 1.64814 1.04043 1.25574 1.29819 1.22379 1.00575 0.97070 0.87955 1.21762 0.97154 0.97649 0.99227 1.21421 1.00342 0.98480 0.93677 1.19565 0.94225 0.94143 0.97169 1.21191 1.13871 1.20575 1.00063 0.91137 1.25054 0.97663 0.95993 0.94980 1.69926 1.37932 1.27883 1.18775 0.86755 0.82218 0.79309 0.80863 1.20303 1.21465 1.19025 1.23282 0.97477 0.91021 0.97281 0.92769 0.93254 0.91284 0.92784 0.92818 0.92802 0.91955 0.93001 0.92770 0.91959 0.91868 0.91371 0.90946 0.93598 0.90481 0.90742 0.94964 0.92568 0.91728 0.92820 0.93110 0.96836 0.97097 0.92822 0.90423 0.93950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 7.11 37.16 0.26 -0.78 16 2 C -0.07 -0.46 0.80 -154.51 -0.12 -0.59 16 3 C -0.14 -0.89 8.46 37.16 0.31 -0.57 16 4 C -0.14 -0.96 7.99 37.15 0.30 -0.67 16 5 C -0.10 -0.75 3.88 -26.73 -0.10 -0.86 16 6 C -0.09 -0.82 2.73 -88.76 -0.24 -1.06 16 7 H 0.09 0.79 5.86 -51.93 -0.30 0.49 16 8 C -0.13 -1.17 4.60 -25.38 -0.12 -1.29 16 9 C 0.03 0.38 5.35 -2.67 -0.01 0.37 16 10 N -0.52 -6.74 5.40 -230.31 -1.24 -7.99 16 11 C 0.05 0.69 5.00 -3.82 -0.02 0.67 16 12 C -0.12 -2.01 4.96 -26.73 -0.13 -2.15 16 13 C -0.10 -2.06 5.15 -26.73 -0.14 -2.19 16 14 C -0.01 -0.34 4.04 -27.89 -0.11 -0.45 16 15 C -0.52 -15.26 9.66 -34.44 -0.33 -15.59 16 16 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 17 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 18 N -0.91 -28.55 13.96 55.43 0.77 -27.78 16 19 Si 0.88 22.30 27.47 -169.99 -4.67 17.63 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 23 C 0.04 0.40 6.00 -1.89 -0.01 0.39 16 24 H 0.05 0.38 7.58 -51.93 -0.39 -0.01 16 25 H 0.05 0.32 8.12 -51.93 -0.42 -0.10 16 26 H 0.07 0.49 4.97 -51.93 -0.26 0.23 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.44 6.12 -51.93 -0.32 0.12 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.49 7.84 -51.93 -0.41 0.09 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.60 6.61 -51.93 -0.34 0.26 16 36 H 0.07 0.62 6.48 -51.93 -0.34 0.28 16 37 H 0.05 0.58 7.14 -51.92 -0.37 0.21 16 38 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.03 0.46 7.89 -51.93 -0.41 0.05 16 41 H 0.06 0.93 6.63 -51.93 -0.34 0.58 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.01 0.33 7.20 -51.92 -0.37 -0.04 16 46 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 47 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 48 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.04 0.46 7.75 -51.92 -0.40 0.06 16 LS Contribution 360.55 15.07 5.43 5.43 Total: -1.00 -30.68 360.55 -10.01 -40.69 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -9.74 Total: -5.04 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: -0.57 Total: -22.94 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: -0.47 Total: -35.77 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.67 Total: 17.63 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.68 -10.01 -40.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307768567.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.414 kcal (2) G-P(sol) polarization free energy of solvation -30.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds