Wall clock time and date at job start Mon Mar 30 2020 06:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46774 * 2 1 4 4 C 1.52990 * 109.47344 * 240.00042 * 2 1 3 5 5 C 1.53001 * 109.47018 * 119.99855 * 2 1 3 6 6 C 1.52995 * 109.46849 * 65.82758 * 5 2 1 7 7 H 1.08995 * 110.78583 * 49.38121 * 6 5 2 8 8 C 1.54600 * 110.72824 * 286.12697 * 6 5 2 9 9 C 1.53988 * 105.13884 * 219.68745 * 8 6 5 10 10 N 1.48059 * 107.14705 * 358.91622 * 9 8 6 11 11 C 1.46904 * 111.16471 * 145.63303 * 10 9 8 12 12 C 1.53001 * 109.46947 * 52.60690 * 11 10 9 13 13 C 1.53000 * 109.47052 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47390 * 179.97438 * 13 12 11 15 15 C 1.50694 * 109.47316 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00218 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99864 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99983 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00480 * 359.97438 * 17 15 14 20 20 H 1.48509 * 109.47001 * 90.00115 * 19 17 15 21 21 H 1.48498 * 109.47572 * 210.00388 * 19 17 15 22 22 H 1.48506 * 109.46831 * 330.01080 * 19 17 15 23 23 C 1.48537 * 105.73696 * 25.07881 * 10 9 8 24 24 H 1.09001 * 109.47157 * 290.19899 * 1 2 3 25 25 H 1.09000 * 109.46905 * 50.20821 * 1 2 3 26 26 H 1.08999 * 109.46753 * 170.20266 * 1 2 3 27 27 H 1.08998 * 109.46918 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47227 * 300.00065 * 3 2 1 29 29 H 1.09006 * 109.47021 * 59.99639 * 3 2 1 30 30 H 1.08998 * 109.47400 * 299.99900 * 4 2 1 31 31 H 1.09004 * 109.47598 * 59.99830 * 4 2 1 32 32 H 1.09007 * 109.47323 * 179.97438 * 4 2 1 33 33 H 1.08998 * 109.47337 * 305.82864 * 5 2 1 34 34 H 1.09000 * 109.47135 * 185.82742 * 5 2 1 35 35 H 1.09001 * 110.30046 * 338.60413 * 8 6 5 36 36 H 1.08999 * 110.30547 * 100.67116 * 8 6 5 37 37 H 1.09010 * 109.91597 * 118.12900 * 9 8 6 38 38 H 1.09001 * 109.91632 * 239.22283 * 9 8 6 39 39 H 1.08994 * 109.47181 * 172.60477 * 11 10 9 40 40 H 1.09003 * 109.46791 * 292.60354 * 11 10 9 41 41 H 1.09006 * 109.46662 * 299.99752 * 12 11 10 42 42 H 1.08991 * 109.47260 * 60.00208 * 12 11 10 43 43 H 1.09006 * 109.46985 * 300.00066 * 13 12 11 44 44 H 1.09003 * 109.46988 * 59.99479 * 13 12 11 45 45 H 1.09009 * 109.46709 * 300.00113 * 14 13 12 46 46 H 1.08999 * 109.47053 * 59.99490 * 14 13 12 47 47 H 0.97007 * 120.00325 * 179.97438 * 18 17 15 48 48 H 1.08994 * 110.67046 * 202.50190 * 23 10 9 49 49 H 1.09007 * 110.66585 * 79.54241 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 2.0400 -0.7212 1.2493 6 6 1.6531 -2.1997 1.1782 7 1 1.9268 -2.6252 0.2127 8 6 0.1421 -2.3835 1.4485 9 6 0.0399 -3.6528 2.3144 10 7 1.4156 -4.1687 2.4967 11 6 1.5822 -4.7779 3.8231 12 6 0.4817 -5.8166 4.0490 13 6 0.6548 -6.4506 5.4307 14 6 -0.4460 -7.4888 5.6570 15 6 -0.2759 -8.1128 7.0180 16 1 0.5364 -7.8005 7.6576 17 6 -1.1566 -9.0832 7.4464 18 7 -1.0079 -9.6282 8.6341 19 14 -2.5613 -9.6239 6.3401 20 1 -2.1141 -10.7568 5.4903 21 1 -3.7112 -10.0552 7.1749 22 1 -2.9750 -8.4897 5.4753 23 6 2.3110 -2.9948 2.3339 24 1 -0.3633 0.3548 0.9645 25 1 -0.3633 0.6577 -0.7896 26 1 -0.3633 -1.0127 -0.1749 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6765 1.9564 0.8900 30 1 1.6768 -1.7488 -1.2492 31 1 1.6768 -0.2074 -2.1392 32 1 3.1301 -0.7208 -1.2494 33 1 1.5940 -0.2712 2.1362 34 1 3.1250 -0.6318 1.3030 35 1 -0.2527 -1.5235 1.9896 36 1 -0.3963 -2.5193 0.5105 37 1 -0.3930 -3.4068 3.2842 38 1 -0.5768 -4.3972 1.8108 39 1 2.5567 -5.2628 3.8804 40 1 1.5153 -4.0051 4.5888 41 1 -0.4928 -5.3316 3.9917 42 1 0.5487 -6.5893 3.2833 43 1 1.6294 -6.9354 5.4884 44 1 0.5877 -5.6775 6.1962 45 1 -1.4204 -7.0035 5.5993 46 1 -0.3793 -8.2618 4.8914 47 1 -1.6278 -10.3107 8.9357 48 1 3.3164 -3.3131 2.0584 49 1 2.3341 -2.3990 3.2464 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307768567.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:47 Heat of formation + Delta-G solvation = -52.256073 kcal Electronic energy + Delta-G solvation = -20730.704383 eV Core-core repulsion = 17883.400899 eV Total energy + Delta-G solvation = -2847.303484 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.65149 -38.39664 -36.49053 -34.65427 -32.94432 -30.58421 -30.17039 -28.13384 -28.05635 -27.00427 -25.47208 -23.50898 -21.92567 -21.64356 -20.67324 -19.47032 -18.83857 -17.35458 -16.68326 -16.35231 -16.20993 -15.50367 -15.31439 -15.00184 -14.86349 -14.75687 -14.38227 -14.02100 -13.82921 -13.73075 -13.29924 -13.08836 -13.01173 -12.69218 -12.67251 -12.55159 -12.44687 -12.29303 -12.27056 -12.02148 -11.76681 -11.68658 -11.42695 -11.39354 -11.36084 -11.28026 -11.20693 -11.11699 -10.93797 -10.77409 -9.34461 -8.30655 -6.34887 1.35001 1.36760 1.49409 2.35602 3.03620 3.04438 3.59657 3.78198 3.83362 4.01638 4.02111 4.11424 4.19098 4.26502 4.41245 4.46778 4.53756 4.56298 4.65627 4.72013 4.74470 4.77846 4.80454 4.86773 4.89917 4.92690 4.95795 4.98532 5.03358 5.08530 5.11412 5.12866 5.17470 5.20925 5.23061 5.24671 5.34821 5.44136 5.48671 5.54513 5.60145 5.62264 5.63225 5.66783 6.00230 6.11561 6.28041 6.73060 7.29845 8.86276 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.044624 B = 0.002746 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.321010 B =10192.873660 C =10469.335869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.067 4.067 3 C -0.141 4.141 4 C -0.144 4.144 5 C -0.095 4.095 6 C -0.084 4.084 7 H 0.089 0.911 8 C -0.120 4.120 9 C 0.028 3.972 10 N -0.528 5.528 11 C 0.055 3.945 12 C -0.107 4.107 13 C -0.094 4.094 14 C -0.011 4.011 15 C -0.535 4.535 16 H 0.030 0.970 17 C 0.000 4.000 18 N -0.952 5.952 19 Si 0.954 3.046 20 H -0.266 1.266 21 H -0.282 1.282 22 H -0.247 1.247 23 C 0.035 3.965 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.036 0.964 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.031 0.969 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.048 0.952 44 H 0.045 0.955 45 H 0.018 0.982 46 H 0.017 0.983 47 H 0.266 0.734 48 H 0.081 0.919 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.574 22.527 -22.309 32.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.067 4.067 3 C -0.198 4.198 4 C -0.201 4.201 5 C -0.133 4.133 6 C -0.102 4.102 7 H 0.107 0.893 8 C -0.157 4.157 9 C -0.100 4.100 10 N -0.252 5.252 11 C -0.073 4.073 12 C -0.145 4.145 13 C -0.132 4.132 14 C -0.049 4.049 15 C -0.573 4.573 16 H 0.048 0.952 17 C -0.196 4.196 18 N -0.593 5.593 19 Si 0.777 3.223 20 H -0.191 1.191 21 H -0.208 1.208 22 H -0.170 1.170 23 C -0.093 4.093 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.054 0.946 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.049 0.951 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.036 0.964 46 H 0.036 0.964 47 H 0.075 0.925 48 H 0.100 0.900 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.628 21.999 -22.561 31.849 hybrid contribution -0.643 -0.128 1.120 1.298 sum 3.985 21.871 -21.441 30.886 Atomic orbital electron populations 1.22213 0.94674 1.02572 1.01409 1.20504 0.95766 0.95360 0.95044 1.21870 1.00986 0.95199 1.01738 1.21956 1.00983 1.00360 0.96786 1.21623 1.00935 0.93226 0.97523 1.22147 0.94355 0.95191 0.98549 0.89290 1.22735 0.96957 0.96192 0.99859 1.22985 0.90831 0.97176 0.99021 1.64796 1.05083 1.26891 1.28471 1.22208 0.99546 0.96522 0.89010 1.21576 0.98331 0.98041 0.96524 1.21292 0.98578 0.97407 0.95961 1.19530 0.95857 0.95097 0.94395 1.21551 1.12824 1.21082 1.01838 0.95202 1.26086 1.00905 0.96002 0.96621 1.70079 1.39478 1.28797 1.20975 0.85597 0.78221 0.79563 0.78896 1.19073 1.20804 1.17043 1.23363 0.97444 0.90456 0.98010 0.92984 0.92885 0.91448 0.92577 0.92425 0.92886 0.92319 0.92609 0.92644 0.92267 0.91539 0.90811 0.89882 0.94562 0.90918 0.90740 0.95061 0.92166 0.91787 0.93342 0.93666 0.96410 0.96446 0.92480 0.90021 0.94084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 7.11 71.98 0.51 -1.26 16 2 C -0.07 -0.77 0.80 -52.18 -0.04 -0.81 16 3 C -0.14 -1.49 8.46 71.98 0.61 -0.89 16 4 C -0.14 -1.62 7.99 71.98 0.58 -1.04 16 5 C -0.10 -1.24 3.88 30.59 0.12 -1.13 16 6 C -0.08 -1.31 2.73 -9.59 -0.03 -1.33 16 7 H 0.09 1.41 5.86 -2.39 -0.01 1.39 16 8 C -0.12 -1.98 4.60 31.47 0.14 -1.83 16 9 C 0.03 0.62 5.35 86.41 0.46 1.08 16 10 N -0.53 -12.94 5.40 -882.55 -4.76 -17.71 16 11 C 0.06 1.53 5.00 86.30 0.43 1.96 16 12 C -0.11 -3.45 4.96 30.59 0.15 -3.30 16 13 C -0.09 -3.80 5.15 30.59 0.16 -3.65 16 14 C -0.01 -0.55 4.04 29.85 0.12 -0.43 16 15 C -0.53 -32.07 9.66 25.60 0.25 -31.82 16 16 H 0.03 1.96 7.99 -2.91 -0.02 1.94 16 17 C 0.00 0.02 5.47 84.65 0.46 0.48 16 18 N -0.95 -61.26 13.96 21.45 0.30 -60.97 16 19 Si 0.95 45.47 27.47 68.60 1.88 47.35 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 22 H -0.25 -10.94 6.54 99.48 0.65 -10.29 16 23 C 0.03 0.69 6.00 86.65 0.52 1.21 16 24 H 0.05 0.63 7.58 -2.39 -0.02 0.61 16 25 H 0.05 0.58 8.12 -2.39 -0.02 0.56 16 26 H 0.07 0.80 4.97 -2.39 -0.01 0.79 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.06 0.70 6.12 -2.39 -0.01 0.69 16 31 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.06 0.83 7.84 -2.39 -0.02 0.81 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 1.15 6.61 -2.39 -0.02 1.14 16 36 H 0.08 1.22 6.48 -2.39 -0.02 1.20 16 37 H 0.04 0.87 7.14 -2.38 -0.02 0.85 16 38 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.03 0.87 7.89 -2.39 -0.02 0.85 16 41 H 0.06 1.90 6.63 -2.38 -0.02 1.88 16 42 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 44 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.02 0.84 7.20 -2.38 -0.02 0.83 16 46 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 47 H 0.27 15.90 8.31 -92.70 -0.77 15.13 16 48 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.04 0.83 7.75 -2.38 -0.02 0.81 16 Total: -1.00 -65.87 360.55 2.67 -63.21 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 0.80 Total: 10.87 kcal Atomic # 6 Polarization: -47.20 SS G_CDS: 4.44 Total: -42.75 kcal Atomic # 7 Polarization: -74.21 SS G_CDS: -4.47 Total: -78.67 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.88 Total: 47.35 kcal Total: -65.87 2.67 -63.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307768567.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.950 kcal (2) G-P(sol) polarization free energy of solvation -65.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds