Wall clock time and date at job start Mon Mar 30 2020 06:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47079 * 2 1 4 4 C 1.52995 * 109.47060 * 239.99868 * 2 1 3 5 5 C 1.53003 * 109.46708 * 119.99479 * 2 1 3 6 6 C 1.53005 * 109.46836 * 54.03384 * 5 2 1 7 7 H 1.09002 * 110.27481 * 309.62142 * 6 5 2 8 8 C 1.54596 * 110.39342 * 71.76621 * 6 5 2 9 9 C 1.54943 * 102.92118 * 140.91367 * 8 6 5 10 10 N 1.48809 * 103.34575 * 322.69097 * 9 8 6 11 11 C 1.46908 * 111.18136 * 159.50440 * 10 9 8 12 12 C 1.53006 * 109.46985 * 52.66137 * 11 10 9 13 13 C 1.53001 * 109.46880 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.46721 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.46810 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00069 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99875 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99965 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99728 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47327 * 60.00428 * 19 17 15 21 21 H 1.48504 * 109.46670 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47255 * 299.99787 * 19 17 15 23 23 C 1.47899 * 105.68309 * 38.97774 * 10 9 8 24 24 H 1.09001 * 109.47693 * 300.00419 * 1 2 3 25 25 H 1.09005 * 109.46925 * 60.00309 * 1 2 3 26 26 H 1.08999 * 109.47361 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47286 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46843 * 300.00127 * 3 2 1 29 29 H 1.08998 * 109.46942 * 59.99733 * 3 2 1 30 30 H 1.08997 * 109.47674 * 310.05864 * 4 2 1 31 31 H 1.08993 * 109.47365 * 70.06699 * 4 2 1 32 32 H 1.09007 * 109.46646 * 190.06245 * 4 2 1 33 33 H 1.08994 * 109.47397 * 294.03183 * 5 2 1 34 34 H 1.08999 * 109.46743 * 174.02640 * 5 2 1 35 35 H 1.08997 * 110.72555 * 259.27500 * 8 6 5 36 36 H 1.09005 * 110.72609 * 22.37801 * 8 6 5 37 37 H 1.08998 * 110.66189 * 81.02111 * 9 8 6 38 38 H 1.09000 * 110.66226 * 204.15252 * 9 8 6 39 39 H 1.08991 * 109.46850 * 172.66051 * 11 10 9 40 40 H 1.08995 * 109.46813 * 292.66389 * 11 10 9 41 41 H 1.08997 * 109.46888 * 300.00261 * 12 11 10 42 42 H 1.08999 * 109.46820 * 59.99765 * 12 11 10 43 43 H 1.08994 * 109.47360 * 300.00321 * 13 12 11 44 44 H 1.08995 * 109.46759 * 60.00349 * 13 12 11 45 45 H 1.08994 * 109.47604 * 300.00341 * 14 13 12 46 46 H 1.09003 * 109.47128 * 60.00354 * 14 13 12 47 47 H 0.97002 * 119.99860 * 180.02562 * 18 17 15 48 48 H 1.08994 * 109.91594 * 215.45154 * 23 10 9 49 49 H 1.09000 * 109.92138 * 94.35055 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7212 1.2494 6 6 1.4111 -2.1139 1.3266 7 1 0.3296 -2.0471 1.2078 8 6 2.0138 -3.0379 0.2436 9 6 2.1433 -4.3953 0.9793 10 7 2.5417 -4.0021 2.3581 11 6 2.2506 -5.0731 3.3206 12 6 2.8750 -6.3816 2.8318 13 6 2.5724 -7.4969 3.8345 14 6 3.1963 -8.8055 3.3454 15 6 2.8987 -9.9039 4.3333 16 1 2.3219 -9.6901 5.2211 17 6 3.3628 -11.1818 4.1039 18 7 4.0656 -11.4420 3.0232 19 14 2.9934 -12.5435 5.3282 20 1 1.5233 -12.7126 5.4518 21 1 3.5990 -13.8136 4.8535 22 1 3.5637 -12.1870 6.6521 23 6 1.7611 -2.7846 2.6679 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.5376 -1.6839 -1.3435 31 1 1.8308 -0.1144 -2.1300 32 1 3.1151 -0.8794 -1.1639 33 1 1.7665 -0.1493 2.1360 34 1 3.1246 -0.8147 1.1975 35 1 1.3398 -3.1239 -0.6087 36 1 2.9907 -2.6736 -0.0743 37 1 1.1872 -4.9186 0.9924 38 1 2.9142 -5.0116 0.5166 39 1 2.6689 -4.8117 4.2925 40 1 1.1715 -5.1970 3.4109 41 1 2.4567 -6.6429 1.8598 42 1 3.9542 -6.2577 2.7414 43 1 2.9910 -7.2353 4.8063 44 1 1.4933 -7.6209 3.9252 45 1 2.7773 -9.0669 2.3737 46 1 4.2754 -8.6818 3.2543 47 1 4.3918 -12.3411 2.8616 48 1 2.3576 -2.1063 3.2778 49 1 0.8475 -3.0541 3.1978 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307768569.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:50 Heat of formation + Delta-G solvation = -37.317683 kcal Electronic energy + Delta-G solvation = -20689.834260 eV Core-core repulsion = 17843.178553 eV Total energy + Delta-G solvation = -2846.655707 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.84286 -37.50580 -34.80787 -32.87003 -31.29898 -29.76584 -28.25424 -27.60530 -27.37792 -25.65195 -24.20235 -22.27743 -20.52454 -20.31304 -19.67952 -18.96120 -16.36802 -16.11891 -15.57285 -14.93758 -14.79729 -14.54040 -14.41422 -14.28428 -13.66723 -13.52507 -13.09775 -12.66335 -12.41575 -12.37525 -12.22672 -11.98327 -11.96550 -11.80802 -11.55052 -11.33927 -11.22017 -11.09949 -10.90710 -10.80452 -10.62503 -10.54908 -10.48554 -10.43964 -10.27685 -10.20578 -9.58452 -9.22203 -8.98105 -8.30475 -8.26523 -5.95316 -3.97481 3.35760 3.39769 3.42480 4.11868 4.34437 4.46728 4.49665 4.54330 4.73072 4.76232 4.99878 5.25105 5.26041 5.29778 5.32497 5.38387 5.39978 5.47355 5.49821 5.52463 5.55868 5.57722 5.63602 5.71518 5.72489 5.76608 5.84527 5.87895 5.94968 6.00917 6.05781 6.06364 6.15506 6.18234 6.19672 6.26243 6.33384 6.54026 6.85509 7.00317 7.03018 7.14411 7.29988 7.73494 7.89956 8.05870 8.48796 9.09788 9.66084 11.16033 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.056163 B = 0.002555 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.427831 B =10955.914673 C =11156.703806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.070 4.070 3 C -0.141 4.141 4 C -0.153 4.153 5 C -0.097 4.097 6 C -0.101 4.101 7 H 0.077 0.923 8 C -0.119 4.119 9 C 0.031 3.969 10 N -0.517 5.517 11 C 0.048 3.952 12 C -0.116 4.116 13 C -0.109 4.109 14 C 0.022 3.978 15 C -0.520 4.520 16 H 0.053 0.947 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.038 3.962 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.043 0.957 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.030 0.970 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.047 0.953 44 H 0.044 0.956 45 H 0.014 0.986 46 H 0.015 0.985 47 H 0.260 0.740 48 H 0.075 0.925 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.160 25.017 -7.254 26.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.070 4.070 3 C -0.198 4.198 4 C -0.210 4.210 5 C -0.134 4.134 6 C -0.120 4.120 7 H 0.095 0.905 8 C -0.156 4.156 9 C -0.097 4.097 10 N -0.241 5.241 11 C -0.080 4.080 12 C -0.154 4.154 13 C -0.147 4.147 14 C -0.015 4.015 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.146 4.146 18 N -0.536 5.536 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.090 4.090 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.061 0.939 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.049 0.951 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.032 0.968 46 H 0.034 0.966 47 H 0.070 0.930 48 H 0.093 0.907 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.505 24.968 -7.295 26.588 hybrid contribution -1.066 -1.036 0.701 1.643 sum -6.571 23.931 -6.594 25.678 Atomic orbital electron populations 1.21966 0.94896 1.01893 1.01387 1.20538 0.95504 0.95197 0.95730 1.21874 1.01003 0.95509 1.01441 1.22259 1.01284 1.01015 0.96447 1.21712 1.00425 0.94477 0.96835 1.22134 1.00161 0.94909 0.94756 0.90470 1.22863 1.01296 0.94496 0.96982 1.23332 0.99638 0.96933 0.89755 1.64877 1.52721 1.04294 1.02239 1.22414 0.98112 0.91570 0.95902 1.21713 1.00980 0.93063 0.99674 1.21594 0.99909 0.95906 0.97298 1.19081 0.95922 0.90213 0.96316 1.21257 1.33595 0.93916 1.07083 0.92841 1.25037 0.95273 0.98769 0.95476 1.69959 1.36609 1.20845 1.26176 0.86668 0.78518 0.81278 0.81583 1.20303 1.21304 1.20251 1.22951 0.96206 0.93065 0.96803 0.92852 0.93014 0.92181 0.92706 0.92893 0.92863 0.91216 0.93377 0.92563 0.92137 0.91440 0.91084 0.90407 0.93862 0.89828 0.90968 0.95144 0.92576 0.91736 0.93445 0.93761 0.96790 0.96627 0.93005 0.90669 0.94174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 7.97 37.16 0.30 -0.70 16 2 C -0.07 -0.50 0.80 -154.51 -0.12 -0.63 16 3 C -0.14 -0.94 8.46 37.16 0.31 -0.63 16 4 C -0.15 -1.12 7.08 37.15 0.26 -0.85 16 5 C -0.10 -0.79 3.64 -26.73 -0.10 -0.89 16 6 C -0.10 -0.93 2.69 -89.26 -0.24 -1.17 16 7 H 0.08 0.68 5.86 -51.93 -0.30 0.38 16 8 C -0.12 -1.16 4.62 -24.87 -0.11 -1.27 16 9 C 0.03 0.39 5.12 -1.74 -0.01 0.38 16 10 N -0.52 -7.06 5.40 -230.21 -1.24 -8.30 16 11 C 0.05 0.72 5.03 -3.82 -0.02 0.71 16 12 C -0.12 -2.08 4.88 -26.73 -0.13 -2.21 16 13 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 14 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 15 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 16 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.57 13.29 55.43 0.74 -26.83 16 19 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 23 C 0.04 0.43 6.35 -2.75 -0.02 0.41 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.43 6.13 -51.93 -0.32 0.11 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.52 4.84 -51.93 -0.25 0.26 16 31 H 0.05 0.33 8.11 -51.93 -0.42 -0.09 16 32 H 0.06 0.43 7.52 -51.93 -0.39 0.04 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.60 7.89 -51.93 -0.41 0.20 16 35 H 0.07 0.61 6.48 -51.93 -0.34 0.28 16 36 H 0.08 0.77 6.52 -51.93 -0.34 0.43 16 37 H 0.04 0.56 8.00 -51.93 -0.42 0.14 16 38 H 0.08 1.11 7.69 -51.93 -0.40 0.71 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.03 0.46 7.81 -51.93 -0.41 0.05 16 41 H 0.06 1.00 6.81 -51.93 -0.35 0.65 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 48 H 0.07 0.82 7.68 -51.93 -0.40 0.43 16 49 H 0.04 0.46 7.57 -51.93 -0.39 0.06 16 LS Contribution 363.55 15.07 5.48 5.48 Total: -1.00 -30.20 363.55 -10.37 -40.57 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -9.75 Total: -5.16 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: -0.57 Total: -22.83 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: -0.51 Total: -35.13 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.20 -10.37 -40.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307768569.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.254 kcal (2) G-P(sol) polarization free energy of solvation -30.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds