Wall clock time and date at job start Mon Mar 30 2020 06:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47079 * 2 1 4 4 C 1.52995 * 109.47060 * 239.99868 * 2 1 3 5 5 C 1.53003 * 109.46708 * 119.99479 * 2 1 3 6 6 C 1.53005 * 109.46836 * 54.03384 * 5 2 1 7 7 H 1.09002 * 110.27481 * 309.62142 * 6 5 2 8 8 C 1.54596 * 110.39342 * 71.76621 * 6 5 2 9 9 C 1.54943 * 102.92118 * 140.91367 * 8 6 5 10 10 N 1.48809 * 103.34575 * 322.69097 * 9 8 6 11 11 C 1.46908 * 111.18136 * 159.50440 * 10 9 8 12 12 C 1.53006 * 109.46985 * 52.66137 * 11 10 9 13 13 C 1.53001 * 109.46880 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.46721 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.46810 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00069 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99875 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99965 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99728 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47327 * 60.00428 * 19 17 15 21 21 H 1.48504 * 109.46670 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47255 * 299.99787 * 19 17 15 23 23 C 1.47899 * 105.68309 * 38.97774 * 10 9 8 24 24 H 1.09001 * 109.47693 * 300.00419 * 1 2 3 25 25 H 1.09005 * 109.46925 * 60.00309 * 1 2 3 26 26 H 1.08999 * 109.47361 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47286 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46843 * 300.00127 * 3 2 1 29 29 H 1.08998 * 109.46942 * 59.99733 * 3 2 1 30 30 H 1.08997 * 109.47674 * 310.05864 * 4 2 1 31 31 H 1.08993 * 109.47365 * 70.06699 * 4 2 1 32 32 H 1.09007 * 109.46646 * 190.06245 * 4 2 1 33 33 H 1.08994 * 109.47397 * 294.03183 * 5 2 1 34 34 H 1.08999 * 109.46743 * 174.02640 * 5 2 1 35 35 H 1.08997 * 110.72555 * 259.27500 * 8 6 5 36 36 H 1.09005 * 110.72609 * 22.37801 * 8 6 5 37 37 H 1.08998 * 110.66189 * 81.02111 * 9 8 6 38 38 H 1.09000 * 110.66226 * 204.15252 * 9 8 6 39 39 H 1.08991 * 109.46850 * 172.66051 * 11 10 9 40 40 H 1.08995 * 109.46813 * 292.66389 * 11 10 9 41 41 H 1.08997 * 109.46888 * 300.00261 * 12 11 10 42 42 H 1.08999 * 109.46820 * 59.99765 * 12 11 10 43 43 H 1.08994 * 109.47360 * 300.00321 * 13 12 11 44 44 H 1.08995 * 109.46759 * 60.00349 * 13 12 11 45 45 H 1.08994 * 109.47604 * 300.00341 * 14 13 12 46 46 H 1.09003 * 109.47128 * 60.00354 * 14 13 12 47 47 H 0.97002 * 119.99860 * 180.02562 * 18 17 15 48 48 H 1.08994 * 109.91594 * 215.45154 * 23 10 9 49 49 H 1.09000 * 109.92138 * 94.35055 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7212 1.2494 6 6 1.4111 -2.1139 1.3266 7 1 0.3296 -2.0471 1.2078 8 6 2.0138 -3.0379 0.2436 9 6 2.1433 -4.3953 0.9793 10 7 2.5417 -4.0021 2.3581 11 6 2.2506 -5.0731 3.3206 12 6 2.8750 -6.3816 2.8318 13 6 2.5724 -7.4969 3.8345 14 6 3.1963 -8.8055 3.3454 15 6 2.8987 -9.9039 4.3333 16 1 2.3219 -9.6901 5.2211 17 6 3.3628 -11.1818 4.1039 18 7 4.0656 -11.4420 3.0232 19 14 2.9934 -12.5435 5.3282 20 1 1.5233 -12.7126 5.4518 21 1 3.5990 -13.8136 4.8535 22 1 3.5637 -12.1870 6.6521 23 6 1.7611 -2.7846 2.6679 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.5376 -1.6839 -1.3435 31 1 1.8308 -0.1144 -2.1300 32 1 3.1151 -0.8794 -1.1639 33 1 1.7665 -0.1493 2.1360 34 1 3.1246 -0.8147 1.1975 35 1 1.3398 -3.1239 -0.6087 36 1 2.9907 -2.6736 -0.0743 37 1 1.1872 -4.9186 0.9924 38 1 2.9142 -5.0116 0.5166 39 1 2.6689 -4.8117 4.2925 40 1 1.1715 -5.1970 3.4109 41 1 2.4567 -6.6429 1.8598 42 1 3.9542 -6.2577 2.7414 43 1 2.9910 -7.2353 4.8063 44 1 1.4933 -7.6209 3.9252 45 1 2.7773 -9.0669 2.3737 46 1 4.2754 -8.6818 3.2543 47 1 4.3918 -12.3411 2.8616 48 1 2.3576 -2.1063 3.2778 49 1 0.8475 -3.0541 3.1978 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307768569.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:49 Heat of formation + Delta-G solvation = -53.245959 kcal Electronic energy + Delta-G solvation = -20690.524962 eV Core-core repulsion = 17843.178553 eV Total energy + Delta-G solvation = -2847.346409 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.67840 -38.36574 -36.45217 -34.65654 -32.74882 -30.61611 -29.83166 -28.13647 -28.03967 -26.90455 -25.60345 -23.69116 -22.11199 -21.35225 -20.87561 -19.55635 -18.43068 -17.19126 -16.70707 -16.50030 -16.09893 -15.44966 -15.28512 -15.16995 -14.81313 -14.55120 -14.27694 -13.91940 -13.77831 -13.65731 -13.20136 -12.98355 -12.89896 -12.77584 -12.64916 -12.58508 -12.50107 -12.27949 -12.24140 -12.12251 -11.99235 -11.68555 -11.43038 -11.39462 -11.34350 -11.25322 -11.19586 -11.03495 -10.84925 -10.55988 -9.33235 -8.20545 -6.32367 1.38748 1.42484 1.50441 2.40314 3.07376 3.11867 3.60353 3.74539 3.83400 4.02718 4.05537 4.11393 4.17798 4.36136 4.38123 4.51423 4.54145 4.60708 4.62797 4.71425 4.78028 4.78974 4.85008 4.86390 4.89344 4.95802 4.97905 5.01038 5.05455 5.11545 5.13738 5.20441 5.22937 5.24725 5.25749 5.31978 5.35109 5.43004 5.51381 5.52822 5.60755 5.61464 5.75463 5.85033 6.01382 6.13433 6.24736 6.84684 7.36840 8.91229 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.056163 B = 0.002555 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.427831 B =10955.914673 C =11156.703806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.068 4.068 3 C -0.140 4.140 4 C -0.153 4.153 5 C -0.092 4.092 6 C -0.093 4.093 7 H 0.086 0.914 8 C -0.110 4.110 9 C 0.026 3.974 10 N -0.530 5.530 11 C 0.058 3.942 12 C -0.105 4.105 13 C -0.096 4.096 14 C 0.024 3.976 15 C -0.546 4.546 16 H 0.060 0.940 17 C -0.004 4.004 18 N -0.934 5.934 19 Si 0.967 3.033 20 H -0.266 1.266 21 H -0.282 1.282 22 H -0.266 1.266 23 C 0.036 3.964 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.035 0.965 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.051 0.949 44 H 0.049 0.951 45 H -0.011 1.011 46 H -0.012 1.012 47 H 0.264 0.736 48 H 0.079 0.921 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.303 26.035 -6.617 27.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.068 4.068 3 C -0.197 4.197 4 C -0.210 4.210 5 C -0.129 4.129 6 C -0.112 4.112 7 H 0.104 0.896 8 C -0.148 4.148 9 C -0.102 4.102 10 N -0.254 5.254 11 C -0.070 4.070 12 C -0.143 4.143 13 C -0.134 4.134 14 C -0.013 4.013 15 C -0.584 4.584 16 H 0.078 0.922 17 C -0.201 4.201 18 N -0.575 5.575 19 Si 0.791 3.209 20 H -0.191 1.191 21 H -0.207 1.207 22 H -0.191 1.191 23 C -0.092 4.092 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.057 0.943 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.007 0.993 46 H 0.007 0.993 47 H 0.073 0.927 48 H 0.097 0.903 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.655 26.009 -6.655 27.659 hybrid contribution -0.679 -1.341 0.459 1.572 sum -7.334 24.667 -6.196 26.470 Atomic orbital electron populations 1.21953 0.94458 1.01863 1.01757 1.20524 0.95801 0.95377 0.95105 1.21861 1.00868 0.95163 1.01840 1.22249 1.00937 1.01055 0.96735 1.21657 0.99768 0.93900 0.97607 1.22101 1.00708 0.95128 0.93252 0.89581 1.22841 1.01771 0.92838 0.97325 1.23371 0.98842 0.98349 0.89618 1.64849 1.53667 1.04533 1.02340 1.22215 0.97958 0.90547 0.96296 1.21526 1.00514 0.93618 0.98607 1.21399 0.99607 0.94299 0.98122 1.19004 0.94403 0.92830 0.95055 1.21709 1.33932 0.95008 1.07750 0.92178 1.26043 0.94814 1.01701 0.97547 1.70100 1.37503 1.21692 1.28170 0.85469 0.78859 0.77567 0.78967 1.19084 1.20729 1.19086 1.23028 0.95996 0.92100 0.98048 0.92608 0.92576 0.92376 0.92941 0.92423 0.92564 0.91334 0.92917 0.93062 0.91659 0.92317 0.89606 0.90466 0.94327 0.91175 0.90657 0.94706 0.92894 0.92813 0.93012 0.93221 0.99301 0.99318 0.92738 0.90293 0.94022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 7.97 71.98 0.57 -1.10 16 2 C -0.07 -0.85 0.80 -52.18 -0.04 -0.89 16 3 C -0.14 -1.62 8.46 71.98 0.61 -1.01 16 4 C -0.15 -1.98 7.08 71.98 0.51 -1.47 16 5 C -0.09 -1.33 3.64 30.60 0.11 -1.22 16 6 C -0.09 -1.55 2.69 -9.91 -0.03 -1.58 16 7 H 0.09 1.33 5.86 -2.39 -0.01 1.31 16 8 C -0.11 -2.01 4.62 31.80 0.15 -1.86 16 9 C 0.03 0.64 5.12 86.60 0.44 1.08 16 10 N -0.53 -14.02 5.40 -882.24 -4.77 -18.79 16 11 C 0.06 1.71 5.03 86.30 0.43 2.14 16 12 C -0.10 -3.78 4.88 30.60 0.15 -3.63 16 13 C -0.10 -4.13 5.15 30.59 0.16 -3.97 16 14 C 0.02 1.34 4.97 29.85 0.15 1.48 16 15 C -0.55 -32.18 9.11 25.60 0.23 -31.95 16 16 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 17 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 18 N -0.93 -58.45 13.29 21.45 0.28 -58.16 16 19 Si 0.97 45.16 29.54 68.60 2.03 47.18 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 C 0.04 0.76 6.35 86.45 0.55 1.31 16 24 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 26 H 0.06 0.70 6.13 -2.39 -0.01 0.69 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.89 4.84 -2.39 -0.01 0.88 16 31 H 0.05 0.63 8.11 -2.39 -0.02 0.61 16 32 H 0.05 0.71 7.52 -2.38 -0.02 0.69 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.06 0.97 7.89 -2.39 -0.02 0.95 16 35 H 0.09 1.33 6.48 -2.39 -0.02 1.31 16 36 H 0.08 1.43 6.52 -2.38 -0.02 1.42 16 37 H 0.04 0.98 8.00 -2.39 -0.02 0.96 16 38 H 0.07 1.89 7.69 -2.39 -0.02 1.87 16 39 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.03 1.00 7.81 -2.39 -0.02 0.98 16 41 H 0.05 1.92 6.81 -2.39 -0.02 1.91 16 42 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 45 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 46 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 47 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 48 H 0.08 1.60 7.68 -2.39 -0.02 1.58 16 49 H 0.04 0.87 7.57 -2.39 -0.02 0.85 16 Total: -1.00 -64.62 363.55 2.86 -61.76 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 0.86 Total: 10.43 kcal Atomic # 6 Polarization: -46.88 SS G_CDS: 4.46 Total: -42.42 kcal Atomic # 7 Polarization: -72.47 SS G_CDS: -4.48 Total: -76.95 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -64.62 2.86 -61.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307768569.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.511 kcal (2) G-P(sol) polarization free energy of solvation -64.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds