Wall clock time and date at job start Mon Mar 30 2020 07:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47400 * 2 1 4 4 C 1.53003 * 109.47005 * 240.00235 * 2 1 3 5 5 C 1.53009 * 109.46938 * 179.97438 * 4 2 1 6 6 C 1.52995 * 109.46923 * 60.00357 * 5 4 2 7 7 C 1.53003 * 109.47023 * 299.99591 * 6 5 4 8 8 C 1.52997 * 109.47204 * 120.00149 * 2 1 3 9 9 C 1.52995 * 109.47316 * 299.99758 * 8 2 1 10 10 N 1.46903 * 109.47135 * 60.00359 * 8 2 1 11 11 C 1.46893 * 111.00119 * 180.02562 * 10 8 2 12 12 C 1.53000 * 109.47186 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.46927 * 60.00040 * 12 11 10 14 14 C 1.52995 * 109.47137 * 300.00055 * 12 11 10 15 15 C 1.53001 * 109.47355 * 179.97438 * 12 11 10 16 16 C 1.50694 * 109.47168 * 180.02562 * 15 12 11 17 17 H 1.08000 * 120.00563 * 0.02562 * 16 15 12 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 12 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 H 1.09001 * 109.46925 * 300.00119 * 1 2 3 25 25 H 1.09006 * 109.47115 * 59.99627 * 1 2 3 26 26 H 1.08996 * 109.47173 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47071 * 60.00112 * 4 2 1 28 28 H 1.08993 * 109.47166 * 299.99579 * 4 2 1 29 29 H 1.09001 * 109.47113 * 300.00105 * 5 4 2 30 30 H 1.09003 * 109.46682 * 180.02562 * 5 4 2 31 31 H 1.08999 * 109.47039 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.47431 * 59.99386 * 6 5 4 33 33 H 1.09001 * 109.47305 * 300.00429 * 7 6 5 34 34 H 1.09006 * 109.47071 * 180.02562 * 7 6 5 35 35 H 1.08996 * 109.47684 * 179.97438 * 9 8 2 36 36 H 1.09001 * 109.47417 * 300.00228 * 9 8 2 37 37 H 1.09007 * 109.46828 * 60.00131 * 9 8 2 38 38 H 1.00899 * 111.00178 * 56.04251 * 10 8 2 39 39 H 1.09002 * 109.47091 * 59.99841 * 11 10 8 40 40 H 1.08992 * 109.47497 * 299.99732 * 11 10 8 41 41 H 1.08998 * 109.46768 * 180.02562 * 13 12 11 42 42 H 1.08995 * 109.47095 * 300.00011 * 13 12 11 43 43 H 1.09000 * 109.47156 * 60.00290 * 13 12 11 44 44 H 1.09002 * 109.47384 * 299.99783 * 14 12 11 45 45 H 1.08997 * 109.47386 * 60.00317 * 14 12 11 46 46 H 1.09007 * 109.47390 * 179.97438 * 14 12 11 47 47 H 1.09007 * 109.46922 * 59.99890 * 15 12 11 48 48 H 1.09003 * 109.46836 * 300.00646 * 15 12 11 49 49 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5700 -0.7206 -1.2496 6 6 4.0805 -1.4416 -0.0005 7 6 3.5705 -0.7204 1.2488 8 6 2.0400 -0.7213 1.2492 9 6 1.5301 -0.0001 2.4984 10 7 1.5504 -2.1063 1.2491 11 6 2.0209 -2.8311 2.4370 12 6 1.4914 -4.2661 2.4019 13 6 2.0017 -4.9672 1.1414 14 6 -0.0384 -4.2451 2.3900 15 6 1.9820 -5.0212 3.6389 16 6 1.4609 -6.4348 3.6039 17 1 0.8422 -6.7621 2.7815 18 6 1.7742 -7.3103 4.6220 19 7 2.5282 -6.9119 5.6232 20 14 1.1278 -9.0624 4.5790 21 1 -0.1866 -9.1221 5.2674 22 1 0.9677 -9.4965 3.1679 23 1 2.0885 -9.9614 5.2675 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6766 -0.2073 -2.1393 28 1 1.6767 -1.7488 -1.2493 29 1 3.9330 0.3072 -1.2498 30 1 3.9333 -1.2341 -2.1399 31 1 5.1705 -1.4408 -0.0004 32 1 3.7174 -2.4694 -0.0003 33 1 3.9335 0.3074 1.2487 34 1 3.9346 -1.2338 2.1388 35 1 1.8930 -0.5141 3.3884 36 1 1.8934 1.0276 2.4985 37 1 0.4400 -0.0001 2.4985 38 1 1.8198 -2.5850 0.4028 39 1 1.6570 -2.3318 3.3351 40 1 3.1107 -2.8457 2.4458 41 1 1.6241 -5.9894 1.1162 42 1 1.6525 -4.4294 0.2599 43 1 3.0915 -4.9822 1.1499 44 1 -0.4019 -3.7456 3.2880 45 1 -0.3875 -3.7074 1.5085 46 1 -0.4157 -5.2675 2.3645 47 1 1.6188 -4.5218 4.5372 48 1 3.0719 -5.0360 3.6469 49 1 2.7482 -7.5278 6.3396 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308751390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:54 Heat of formation + Delta-G solvation = -40.658945 kcal Electronic energy + Delta-G solvation = -22535.111975 eV Core-core repulsion = 19688.311380 eV Total energy + Delta-G solvation = -2846.800595 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.13737 -36.85015 -33.76284 -32.77367 -32.13189 -29.93480 -27.28576 -26.82795 -26.28606 -25.75713 -24.86679 -22.65373 -21.41503 -20.90388 -18.36912 -17.88206 -16.24177 -15.79494 -15.02033 -14.81548 -14.68289 -14.28705 -14.00189 -13.71684 -13.34388 -13.05278 -12.71202 -12.39345 -12.17395 -12.00075 -11.94431 -11.79721 -11.69943 -11.62973 -11.37513 -11.27109 -10.93418 -10.87109 -10.74362 -10.71303 -10.49216 -10.44933 -10.16998 -10.04927 -9.97731 -9.81944 -9.60233 -8.95030 -8.77238 -8.28573 -7.86772 -5.93270 -3.93017 3.35122 3.41603 3.44368 4.46152 4.54971 4.67611 4.72031 4.82487 5.10527 5.14604 5.37072 5.42027 5.42804 5.47624 5.54779 5.64062 5.74425 5.79349 5.83062 5.87523 5.89140 5.94875 6.00848 6.02856 6.07002 6.10605 6.15522 6.18750 6.28215 6.36777 6.43491 6.47629 6.50696 6.58228 6.62382 6.72538 6.86504 6.88591 7.26752 7.31830 7.33306 7.56621 7.74173 7.84661 7.92037 8.07590 8.52508 9.12533 9.69574 11.18416 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.029653 B = 0.004562 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.024986 B = 6136.447040 C = 6215.830048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.075 4.075 3 H 0.064 0.936 4 C -0.118 4.118 5 C -0.118 4.118 6 C -0.122 4.122 7 C -0.149 4.149 8 C 0.118 3.882 9 C -0.141 4.141 10 N -0.671 5.671 11 C 0.065 3.935 12 C -0.057 4.057 13 C -0.128 4.128 14 C -0.115 4.115 15 C 0.034 3.966 16 C -0.505 4.505 17 H 0.058 0.942 18 C 0.054 3.946 19 N -0.898 5.898 20 Si 0.887 3.113 21 H -0.282 1.282 22 H -0.275 1.275 23 H -0.288 1.288 24 H 0.053 0.947 25 H 0.041 0.959 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.049 0.951 37 H 0.065 0.935 38 H 0.338 0.662 39 H 0.067 0.933 40 H 0.025 0.975 41 H 0.062 0.938 42 H 0.031 0.969 43 H 0.039 0.961 44 H 0.038 0.962 45 H 0.042 0.958 46 H 0.052 0.948 47 H 0.014 0.986 48 H 0.011 0.989 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.050 14.722 -12.123 19.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.093 4.093 3 H 0.083 0.917 4 C -0.155 4.155 5 C -0.156 4.156 6 C -0.160 4.160 7 C -0.189 4.189 8 C 0.027 3.973 9 C -0.199 4.199 10 N -0.305 5.305 11 C -0.063 4.063 12 C -0.057 4.057 13 C -0.185 4.185 14 C -0.172 4.172 15 C -0.003 4.003 16 C -0.543 4.543 17 H 0.076 0.924 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.715 3.285 21 H -0.208 1.208 22 H -0.200 1.200 23 H -0.214 1.214 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.159 0.841 39 H 0.086 0.914 40 H 0.043 0.957 41 H 0.081 0.919 42 H 0.050 0.950 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.071 0.929 47 H 0.032 0.968 48 H 0.030 0.970 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.585 14.814 -11.689 18.880 hybrid contribution 0.814 -1.168 -0.017 1.424 sum 0.230 13.646 -11.706 17.981 Atomic orbital electron populations 1.21772 0.94682 1.02923 1.00367 1.21090 0.96237 0.98292 0.93721 0.91748 1.21633 0.95106 1.01254 0.97553 1.21539 0.95970 1.00396 0.97685 1.21536 1.00127 0.99733 0.94596 1.22270 0.97663 1.00655 0.98264 1.20850 0.91165 0.90393 0.94900 1.21921 1.02012 0.98867 0.97066 1.60791 1.62832 1.01120 1.05738 1.22166 0.96613 0.94804 0.92724 1.20606 0.95653 0.91938 0.97531 1.21764 0.99619 1.01084 0.96044 1.21584 0.95164 1.00737 0.99710 1.19115 0.95886 0.94354 0.90992 1.21246 1.30607 0.96068 1.06412 0.92352 1.25014 0.95435 0.98398 0.95752 1.69971 1.37675 1.35434 1.10725 0.86680 0.78640 0.85153 0.78033 1.20805 1.19971 1.21433 0.92779 0.94038 0.91154 0.92276 0.91463 0.92351 0.92319 0.92267 0.91819 0.92194 0.91427 0.92366 0.93171 0.91567 0.84061 0.91447 0.95707 0.91858 0.94994 0.94234 0.94275 0.93910 0.92922 0.96782 0.97034 0.93226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.68 37.16 0.32 -1.17 16 2 C -0.07 -0.79 2.07 -90.62 -0.19 -0.98 16 3 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.12 -1.19 4.94 -26.72 -0.13 -1.32 16 5 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 6 C -0.12 -1.39 5.66 -26.73 -0.15 -1.54 16 7 C -0.15 -1.78 4.36 -26.70 -0.12 -1.90 16 8 C 0.12 1.43 0.37 -131.58 -0.05 1.38 16 9 C -0.14 -1.72 7.88 37.15 0.29 -1.43 16 10 N -0.67 -9.41 4.40 -99.95 -0.44 -9.85 16 11 C 0.07 1.12 3.86 -3.83 -0.01 1.10 16 12 C -0.06 -1.13 0.60 -154.51 -0.09 -1.22 16 13 C -0.13 -2.39 7.89 37.16 0.29 -2.10 16 14 C -0.11 -2.23 8.06 37.15 0.30 -1.93 16 15 C 0.03 0.86 4.04 -27.89 -0.11 0.75 16 16 C -0.50 -13.88 7.65 -34.44 -0.26 -14.15 16 17 H 0.06 1.57 5.68 -52.49 -0.30 1.27 16 18 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 20 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H 0.05 0.57 6.43 -51.93 -0.33 0.24 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.85 7.60 -51.93 -0.39 0.45 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.74 6.57 -51.93 -0.34 0.40 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.81 6.77 -51.93 -0.35 0.46 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.92 6.41 -51.93 -0.33 0.58 16 35 H 0.06 0.78 6.40 -51.93 -0.33 0.45 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.82 6.43 -51.93 -0.33 0.49 16 38 H 0.34 4.72 3.23 -39.29 -0.13 4.59 16 39 H 0.07 1.21 6.30 -51.93 -0.33 0.88 16 40 H 0.02 0.44 6.31 -51.93 -0.33 0.11 16 41 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 42 H 0.03 0.51 6.57 -51.93 -0.34 0.17 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.04 0.74 7.60 -51.93 -0.39 0.35 16 46 H 0.05 1.10 6.62 -51.93 -0.34 0.75 16 47 H 0.01 0.38 8.14 -51.92 -0.42 -0.04 16 48 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 347.56 15.07 5.24 5.24 Total: -1.00 -28.24 347.56 -8.79 -37.02 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -9.13 Total: 1.51 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: -0.17 Total: -24.36 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 0.30 Total: -36.14 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.24 -8.79 -37.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308751390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.637 kcal (2) G-P(sol) polarization free energy of solvation -28.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds